mRNA_H-elongata_contig49714.12181.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49714.12181.1
Unique NamemRNA_H-elongata_contig49714.12181.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig49714.12181.1 vs. uniprot
Match: A0A6H5KGV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGV3_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.250e-35
Identity = 70/152 (46.05%), Postives = 101/152 (66.45%), Query Frame = 1 
Query:   10 EITAMTAAAAAAAILQNMVQDFVSAADGDDDP--GVGGLSFMGEKEEEEKPKQTRQSYVRTDYWGSTWRQWLQELQKLHTS*DGLDPKCWEALQFTSTFTVPYELFVHIPESVTPIFTTMAQGITC*DCPPVELNVLGALKVLAGGNSFLDI 459
            E + M  AAAAA+ LQN++  F S  + DD    G+ G   + E+EEE++ K  R+SY R +YW STW +W+ +L++L+ + +GLDP+C EA+QF  TF +P+ LF  I ++VT IF + A+ +   DCPPVEL V+G LKVLA G  F D+
Sbjct:    3 EESIMAGAAAAASSLQNIMHTFDSDGEHDDQEPGGLFGDLRVEEEEEEQREKHIRRSYPRPEYWRSTWGKWVLKLRELNAAEEGLDPECREAVQFAGTFRIPFVLFESIMQTVTSIFQSSARDVAGRDCPPVELKVMGTLKVLASGCCFQDV 154
[Close]
BLAST of mRNA_H-elongata_contig49714.12181.1 vs. uniprot
Match: A0A6H5KHV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHV5_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 6.920e-5
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:  334 ESVTPIFTTMAQGITC*DCPPVELNVLGALKVLAGGNSFLDI 459
            ++VT IF + A+ +   DCPPVEL V+G LKVLA G  F D+
Sbjct:    2 QTVTSIFQSSARDVAGRDCPPVELKVMGTLKVLASGCCFQDV 43
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49714.12181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KGV3_9PHAE1.250e-3546.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHV5_9PHAE6.920e-552.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49714contigH-elongata_contig49714:869..1939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size463
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49714.12181.1prot_H-elongata_contig49714.12181.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49714 1534..1851 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930818.6218822-UTR-H-elongata_contig49714:868..9231622930818.6218822-UTR-H-elongata_contig49714:868..923Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49714 869..923 -
1691679583.5361927-UTR-H-elongata_contig49714:868..9231691679583.5361927-UTR-H-elongata_contig49714:868..923Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49714 869..923 -
1622930818.6349807-UTR-H-elongata_contig49714:1531..15331622930818.6349807-UTR-H-elongata_contig49714:1531..1533Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49714 1532..1533 -
1691679583.545865-UTR-H-elongata_contig49714:1531..15331691679583.545865-UTR-H-elongata_contig49714:1531..1533Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49714 1532..1533 -
1622930818.6674392-UTR-H-elongata_contig49714:1851..19391622930818.6674392-UTR-H-elongata_contig49714:1851..1939Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49714 1852..1939 -
1691679583.5671127-UTR-H-elongata_contig49714:1851..19391691679583.5671127-UTR-H-elongata_contig49714:1851..1939Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49714 1852..1939 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930818.647276-CDS-H-elongata_contig49714:1533..18511622930818.647276-CDS-H-elongata_contig49714:1533..1851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49714 1534..1851 -
1691679583.556751-CDS-H-elongata_contig49714:1533..18511691679583.556751-CDS-H-elongata_contig49714:1533..1851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49714 1534..1851 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49714.12181.1

>prot_H-elongata_contig49714.12181.1 ID=prot_H-elongata_contig49714.12181.1|Name=mRNA_H-elongata_contig49714.12181.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MAMMTLAWVVCRSWGRRRRRKNPSRPGRVMFVRTTGGLPGGSGCRSYKSC
TLLRMGSTPSAGKLYSSPVPSRSRTSSLCTSRSLSHRYSQLWLKASHAEI
VLQWN*
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mRNA from alignment at H-elongata_contig49714:869..1939-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49714.12181.1 ID=mRNA_H-elongata_contig49714.12181.1|Name=mRNA_H-elongata_contig49714.12181.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1071bp|location=Sequence derived from alignment at H-elongata_contig49714:869..1939- (Himanthalia elongata Himel1 dioecious)
GGCGACTCTGAAATAACTGCAATGACTGCAGCTGCGGCCGCCGCGGCGAT
TTTGCAGAACATGGTTCAAGACTTTGTCTCGGCAGCCGATGGCGATGATG
ACCCTGGCGTGGGTGGTTTGTCGTTCATGGGGGAGAAGGAGGAGGAGGAA
AAACCCAAGCAGACCCGGCAGAGTTATGTTCGTACGGACTACTGGGGGTC
TACCTGGAGGCAGTGGCTGCAGGAGCTACAAAAGCTGCACACTTCTTAGG
ATGGGCTCGACCCCAAGTGCTGGGAAGCTTTACAGTTCACCAGTACCTTC
ACGGTCCCGTACGAGCTCTTTGTGCACATCCCGGAGTCTGTCACACCGAT
ATTCACAACTATGGCTCAAGGCATCACATGCTGAGATTGTCCTCCAGTGG
AACTGAACGTGAGGAGGTTTATGAGTTAGTTCTCGTTTCCATGTACCGCT
GTGCGAAATGTACCATCTTTCTACACTCCGGGTCTACGTCGGCGTTATTC
TGTATGATTTCTGCAGCAGTATGCACATCAGTGCACTGGTACACCAGCAG
GCGTTGCTGTGTATTGTTCGTGTCAAATACGCCCGTGCAATTTGAAGCAC
TACTGCGCTGTAGCCAATGTTGTTGCTTTGCGCAGCTTGATAATAACACA
CAGCAGTAGCAGCACCCGTGAATAGGTAATCAGCAGTAGCAGCACATATA
GGGCGCCACCAACTGCAGTGTGTACACTTGCGCATATTTACAACTTCACA
GACACCAGTGTAGATGCCTGTTGAGTTTAATTGTGAAAGCGTTTTGTGTT
TTTGTTGTCGCAACAAAACCTATGTGTACAGAACAAGCCTTTAAAGTAGT
CCACGGAAAACTCACCAACTTATCTGCCCGTACGGATGGGTGTAGCTGCG
GTTTTTGTCGAGGTATTACTATTGCTCGATCTCTGTTTCTGTGCGTGAGG
AAGGCATTCCACGTTATATTTATATTTATATTTCATCCTGTCCCCCGCTT
TACTGCTCTGCCGCAGGTGCTGGGGGCCTTGAAGGTGTTGGCTGGAGGAA
ACTCGTTCCTTGATATTGTTG
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Coding sequence (CDS) from alignment at H-elongata_contig49714:869..1939-

>mRNA_H-elongata_contig49714.12181.1 ID=mRNA_H-elongata_contig49714.12181.1|Name=mRNA_H-elongata_contig49714.12181.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig49714:869..1939- (Himanthalia elongata Himel1 dioecious)
ATGGCGATGATGACCCTGGCGTGGGTGGTTTGTCGTTCATGGGGGAGAAG
GAGGAGGAGGAAAAACCCAAGCAGACCCGGCAGAGTTATGTTCGTACGGA
CTACTGGGGGTCTACCTGGAGGCAGTGGCTGCAGGAGCTACAAAAGCTGC
ACACTTCTTAGGATGGGCTCGACCCCAAGTGCTGGGAAGCTTTACAGTTC
ACCAGTACCTTCACGGTCCCGTACGAGCTCTTTGTGCACATCCCGGAGTC
TGTCACACCGATATTCACAACTATGGCTCAAGGCATCACATGCTGAGATT
GTCCTCCAGTGGAACTGAATGGCGATGATGACCCTGGCGTGGGTGGTTTG
TCGTTCATGGGGGAGAAGGAGGAGGAGGAAAAACCCAAGCAGACCCGGCA
GAGTTATGTTCGTACGGACTACTGGGGGTCTACCTGGAGGCAGTGGCTGC
AGGAGCTACAAAAGCTGCACACTTCTTAGGATGGGCTCGACCCCAAGTGC
TGGGAAGCTTTACAGTTCACCAGTACCTTCACGGTCCCGTACGAGCTCTT
TGTGCACATCCCGGAGTCTGTCACACCGATATTCACAACTATGGCTCAAG
GCATCACATGCTGAGATTGTCCTCCAGTGGAACTGA
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