mRNA_H-elongata_contig49676.12172.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49676.12172.1
Unique NamemRNA_H-elongata_contig49676.12172.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49676.12172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49676contigH-elongata_contig49676:926..4154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2904
Cds size2241
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49676.12172.1prot_H-elongata_contig49676.12172.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49676 1285..3525 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930817.8907814-UTR-H-elongata_contig49676:925..12841622930817.8907814-UTR-H-elongata_contig49676:925..1284Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49676 926..1284 +
1691679583.1169724-UTR-H-elongata_contig49676:925..12841691679583.1169724-UTR-H-elongata_contig49676:925..1284Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49676 926..1284 +
1622930817.9218936-UTR-H-elongata_contig49676:3525..35291622930817.9218936-UTR-H-elongata_contig49676:3525..3529Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49676 3526..3529 +
1691679583.1516795-UTR-H-elongata_contig49676:3525..35291691679583.1516795-UTR-H-elongata_contig49676:3525..3529Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49676 3526..3529 +
1622930817.9522388-UTR-H-elongata_contig49676:3854..41541622930817.9522388-UTR-H-elongata_contig49676:3854..4154Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49676 3855..4154 +
1691679583.1620395-UTR-H-elongata_contig49676:3854..41541691679583.1620395-UTR-H-elongata_contig49676:3854..4154Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49676 3855..4154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930817.9044552-CDS-H-elongata_contig49676:1284..35251622930817.9044552-CDS-H-elongata_contig49676:1284..3525Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49676 1285..3525 +
1691679583.1375163-CDS-H-elongata_contig49676:1284..35251691679583.1375163-CDS-H-elongata_contig49676:1284..3525Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49676 1285..3525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49676.12172.1

>prot_H-elongata_contig49676.12172.1 ID=prot_H-elongata_contig49676.12172.1|Name=mRNA_H-elongata_contig49676.12172.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=747bp
MPYMAGKYCMYQSCTKLSSFGLASTKTAEYCRQHAMDGMVNVRVKTCTHE
GCIKYPLFGVAGTKTAKFCRQHALDGMVHVKLKRCLHSKCIKVPVFGMAG
TKTGKYCKQHAMDGMVNLKLKRCLHSKCIKIPLFGVAGTKTAKYCRQHAM
DGMVDVRNRICIHEGCIKLPSFGMAGTKMAEFCRQHAMDGMVNVKLKRCL
HSKCAKVSSFGVVGSKTAEYCRQHAMDGMVRVKLKICLHSKCIKAPAFGV
VGTKTAKYCRQHAMDGMVNVTLKRCLHSKCIKVPVFGLASTKTGKYCRQH
AMDGMVNVKLKRCLHSKCIKIPVFGVAGTKTAEYCRQHAMDEMVDVRNKI
CTHVGCIKSSSFGMAGTKMAEFCRQHAMDGMVNVRLKRCLHSKCTKVPAF
GVASTKTAKYCRQHAMDGMVRVKLKTCLHSNCMKVPAFGVAGTKTAKYCR
QHAMDGMVNVKLKRCLHSKCIKLSVFGVAGTKTAEYCRQHAMDEMVDVRK
KICTHVGCIKSSSFGIAGTKMAEFCRQHAMDGMVNVRLKRCVHRECTKVP
SFGVAGTKTAIYCREHKMDGMVDILNKICIHEGCITIASFGTPGTRTVEY
CKQHAGDGMVNVRKNKKMCTHQFCTNRTYFGLAGARKAEYCKQHTPDGTI
DIHHRRCANGKYIVNASPTGVKRKSFDPFPAQKIVHPGDSGDSRTRARHL
DISSAASTLVVARESTAAAITMPATDEQISSVAQDPSVKTELRLFL*
back to top

mRNA from alignment at H-elongata_contig49676:926..4154+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49676.12172.1 ID=mRNA_H-elongata_contig49676.12172.1|Name=mRNA_H-elongata_contig49676.12172.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3229bp|location=Sequence derived from alignment at H-elongata_contig49676:926..4154+ (Himanthalia elongata Himel1 dioecious)
GCCAGCGATTGGTCAATCCTTAGAAGGCCTTACAGACCCGCCTGTCAGAT
GTCAGATGTGAGACAAAACCAAGAGGACAGCACGCGACAACATTTCGCGT
TGAAACACTTACAATAGCCAGGTCACACTCTGGGTGCACGGCGTGGTCCA
CGGGAGGAAAACACAGATTCCTGGGATGTTAAAGCCATAGGCCAGACTTG
AGCTTTTCAACTTCCCCCCCCCTCCTTCAGAGTTGTAGCCTTTCACTTCG
AGGCTTTTTCAAACGGAAGGCACTTGGAGCTTTGAGCGGAGCTGAGCAGA
TACAGAACACGGATTCCGGGCGTTGTTGGTAATACAACGACGGCTTTGAA
CACAGCGCGATGCCTTACATGGCTGGAAAGTACTGCATGTATCAATCCTG
CACCAAGCTGTCGTCATTCGGCCTGGCCAGCACAAAAACGGCGGAGTACT
GCAGACAGCACGCCATGGACGGGATGGTCAACGTCCGGGTTAAGACCTGT
ACTCACGAAGGCTGTATCAAGTACCCCTTGTTCGGCGTGGCCGGCACAAA
AACGGCGAAGTTTTGCAGACAGCACGCCCTGGACGGGATGGTTCACGTCA
AATTAAAGAGATGTCTCCATAGCAAATGTATCAAGGTCCCGGTGTTCGGC
ATGGCTGGCACAAAAACGGGAAAATACTGCAAACAGCACGCCATGGACGG
GATGGTTAACCTTAAATTGAAGAGATGTCTCCATAGCAAATGTATCAAGA
TCCCGTTGTTCGGCGTGGCCGGCACAAAAACGGCTAAGTACTGCAGACAG
CACGCCATGGACGGGATGGTTGATGTCCGCAACAGGATATGTATCCACGA
AGGCTGTATCAAGTTACCCTCGTTCGGCATGGCTGGTACCAAAATGGCGG
AGTTTTGCAGACAGCACGCCATGGACGGGATGGTTAACGTCAAATTGAAG
AGATGTCTCCATAGCAAATGTGCCAAGGTCTCGTCGTTCGGCGTGGTCGG
CTCAAAAACGGCTGAATACTGCAGGCAGCACGCCATGGACGGGATGGTTC
GCGTCAAATTAAAGATATGTCTCCACAGCAAATGTATCAAGGCCCCGGCG
TTCGGCGTGGTCGGCACAAAAACGGCGAAGTACTGCAGACAGCACGCCAT
GGACGGGATGGTTAACGTCACATTGAAGAGATGTCTCCATAGCAAATGTA
TCAAGGTCCCGGTGTTCGGCCTGGCCAGCACAAAAACGGGAAAATACTGC
AGACAGCACGCCATGGACGGGATGGTTAACGTCAAATTGAAGAGATGTCT
CCATAGCAAATGTATCAAGATCCCGGTTTTCGGCGTGGCCGGCACAAAAA
CGGCTGAGTACTGCAGACAGCACGCCATGGACGAGATGGTTGATGTCCGC
AACAAGATATGTACCCACGTAGGCTGTATCAAGTCATCCTCGTTCGGCAT
GGCTGGCACCAAAATGGCAGAGTTTTGCAGACAGCACGCCATGGACGGGA
TGGTCAACGTCAGATTGAAGAGATGTCTCCATAGCAAATGTACCAAGGTC
CCGGCGTTCGGCGTGGCCAGCACCAAAACGGCTAAGTACTGCAGGCAGCA
CGCCATGGACGGGATGGTTCGCGTCAAATTAAAGACATGTCTCCATAGCA
ATTGTATGAAGGTCCCGGCGTTCGGCGTGGCGGGCACAAAAACGGCGAAG
TACTGTAGACAGCACGCGATGGACGGGATGGTTAACGTCAAATTGAAGAG
ATGTCTCCATAGCAAATGTATCAAGCTCTCGGTGTTCGGCGTGGCCGGCA
CAAAAACGGCTGAGTACTGCAGACAGCACGCCATGGATGAGATGGTTGAT
GTCCGCAAGAAGATATGTACCCACGTAGGCTGTATCAAGTCATCCTCGTT
CGGCATAGCTGGCACCAAAATGGCGGAGTTTTGCAGACAGCACGCCATGG
ACGGGATGGTCAACGTCAGATTGAAGAGGTGTGTCCATCGCGAATGCACC
AAGGTCCCGTCGTTCGGCGTGGCCGGTACAAAAACGGCAATATACTGTAG
AGAGCATAAAATGGATGGGATGGTCGACATCCTCAACAAGATCTGTATCC
ACGAAGGGTGCATTACGATAGCGTCTTTCGGTACACCAGGAACCAGAACG
GTGGAATACTGCAAACAGCACGCCGGCGATGGGATGGTGAACGTTCGTAA
AAATAAAAAAATGTGCACCCACCAATTCTGCACTAATCGGACATATTTCG
GCTTGGCCGGTGCCAGAAAAGCCGAGTACTGCAAGCAGCATACCCCTGAT
GGGACGATCGATATCCATCACAGGAGGTGTGCCAACGGAAAATACATTGT
GAACGCGAGTCCGACAGGCGTAAAACGGAAAAGCTTTGATCCTTTTCCCG
CCCAAAAAATCGTTCATCCGGGCGATAGCGGGGATTCTCGAACGCGAGCA
CGTCATCTAGACATATCTAGTGCGGCTTCGACGCTAGTCGTTGCACGAGA
ATCAACTGCAGCAGCGATAACTATGCCGGCGACCGACGAACAAATATCTT
CCGTTGCACAAGATCCATCTGTGAAGACGGAGTTGCGGCTCTTCTTGTAG
CCAGGTACACCGCGCCCGACTATAACCCCAGCTAGTTTAATATAGGTTTG
CCACTACGATCTCGCGAAAATCTCCGTTCTTTTTCCCTAACTGACGCCCC
TCCGACAGGGTATACTTAATAGCCTGTCGCGGTCGGCCAGAAGATATATC
CCATATATTTTCGGATACTTGAATTGTATTTGTTCGAGTTTAGTTTAGCT
CCACCCTCCCTATTGCCTATATACCCGTGTAAACGATTACCTTGGAGTGT
AGTCAATCTCTAACAAAGCTCGCAACTCGCACTTCTTTCCACGAACCTGT
GCTGTCGTTCTCCTGTATTTTGAACTCAGGCACGTTGAACATGGTGATCG
GTCAAGAGCACGGGGCCGTTAGCGGTTGAGACGCCGCTCGATCTGCGGTA
AGGGCGCCATTATAGGCAAGACTCCTCTGTTGCCAGAGTGTGTCGATCGG
TATTCCAGAGTTGGATAGCCTTCAGAGAGAAGTCTCTGTAGAATTTGCTG
AGTTGCCAGACGTGGAACATGGATTCGAGTTACGACAGGCGCAGCCCTCC
AGCTCTTGTTTGACGTCATACGAGTACCTGGTACCAGTGCAGGGAGACAT
CTAGACTTTTCATTTTCCGCTTGTATATT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig49676:926..4154+

>mRNA_H-elongata_contig49676.12172.1 ID=mRNA_H-elongata_contig49676.12172.1|Name=mRNA_H-elongata_contig49676.12172.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4482bp|location=Sequence derived from alignment at H-elongata_contig49676:926..4154+ (Himanthalia elongata Himel1 dioecious)
ATGCCTTACATGGCTGGAAAGTACTGCATGTATCAATCCTGCACCAAGCT
GTCGTCATTCGGCCTGGCCAGCACAAAAACGGCGGAGTACTGCAGACAGC
ACGCCATGGACGGGATGGTCAACGTCCGGGTTAAGACCTGTACTCACGAA
GGCTGTATCAAGTACCCCTTGTTCGGCGTGGCCGGCACAAAAACGGCGAA
GTTTTGCAGACAGCACGCCCTGGACGGGATGGTTCACGTCAAATTAAAGA
GATGTCTCCATAGCAAATGTATCAAGGTCCCGGTGTTCGGCATGGCTGGC
ACAAAAACGGGAAAATACTGCAAACAGCACGCCATGGACGGGATGGTTAA
CCTTAAATTGAAGAGATGTCTCCATAGCAAATGTATCAAGATCCCGTTGT
TCGGCGTGGCCGGCACAAAAACGGCTAAGTACTGCAGACAGCACGCCATG
GACGGGATGGTTGATGTCCGCAACAGGATATGTATCCACGAAGGCTGTAT
CAAGTTACCCTCGTTCGGCATGGCTGGTACCAAAATGGCGGAGTTTTGCA
GACAGCACGCCATGGACGGGATGGTTAACGTCAAATTGAAGAGATGTCTC
CATAGCAAATGTGCCAAGGTCTCGTCGTTCGGCGTGGTCGGCTCAAAAAC
GGCTGAATACTGCAGGCAGCACGCCATGGACGGGATGGTTCGCGTCAAAT
TAAAGATATGTCTCCACAGCAAATGTATCAAGGCCCCGGCGTTCGGCGTG
GTCGGCACAAAAACGGCGAAGTACTGCAGACAGCACGCCATGGACGGGAT
GGTTAACGTCACATTGAAGAGATGTCTCCATAGCAAATGTATCAAGGTCC
CGGTGTTCGGCCTGGCCAGCACAAAAACGGGAAAATACTGCAGACAGCAC
GCCATGGACGGGATGGTTAACGTCAAATTGAAGAGATGTCTCCATAGCAA
ATGTATCAAGATCCCGGTTTTCGGCGTGGCCGGCACAAAAACGGCTGAGT
ACTGCAGACAGCACGCCATGGACGAGATGGTTGATGTCCGCAACAAGATA
TGTACCCACGTAGGCTGTATCAAGTCATCCTCGTTCGGCATGGCTGGCAC
CAAAATGGCAGAGTTTTGCAGACAGCACGCCATGGACGGGATGGTCAACG
TCAGATTGAAGAGATGTCTCCATAGCAAATGTACCAAGGTCCCGGCGTTC
GGCGTGGCCAGCACCAAAACGGCTAAGTACTGCAGGCAGCACGCCATGGA
CGGGATGGTTCGCGTCAAATTAAAGACATGTCTCCATAGCAATTGTATGA
AGGTCCCGGCGTTCGGCGTGGCGGGCACAAAAACGGCGAAGTACTGTAGA
CAGCACGCGATGGACGGGATGGTTAACGTCAAATTGAAGAGATGTCTCCA
TAGCAAATGTATCAAGCTCTCGGTGTTCGGCGTGGCCGGCACAAAAACGG
CTGAGTACTGCAGACAGCACGCCATGGATGAGATGGTTGATGTCCGCAAG
AAGATATGTACCCACGTAGGCTGTATCAAGTCATCCTCGTTCGGCATAGC
TGGCACCAAAATGGCGGAGTTTTGCAGACAGCACGCCATGGACGGGATGG
TCAACGTCAGATTGAAGAGGTGTGTCCATCGCGAATGCACCAAGGTCCCG
TCGTTCGGCGTGGCCGGTACAAAAACGGCAATATACTGTAGAGAGCATAA
AATGGATGGGATGGTCGACATCCTCAACAAGATCTGTATCCACGAAGGGT
GCATTACGATAGCGTCTTTCGGTACACCAGGAACCAGAACGGTGGAATAC
TGCAAACAGCACGCCGGCGATGGGATGGTGAACGTTCGTAAAAATAAAAA
AATGTGCACCCACCAATTCTGCACTAATCGGACATATTTCGGCTTGGCCG
GTGCCAGAAAAGCCGAGTACTGCAAGCAGCATACCCCTGATGGGACGATC
GATATCCATCACAGGAGGTGTGCCAACGGAAAATACATTGTGAACGCGAG
TCCGACAGGCGTAAAACGGAAAAGCTTTGATCCTTTTCCCGCCCAAAAAA
TCGTTCATCCGGGCGATAGCGGGGATTCTCGAACGCGAGCACGTCATCTA
GACATATCTAGTGCGGCTTCGACGCTAGTCGTTGCACGAGAATCAACTGC
AGCAGCGATAACTATGCCGGCGACCGACGAACAAATATCTTCCGTTGCAC
AAGATCCATCTGTGAAGACGGAGTTGCGGCTCTTCTTGTAGATGCCTTAC
ATGGCTGGAAAGTACTGCATGTATCAATCCTGCACCAAGCTGTCGTCATT
CGGCCTGGCCAGCACAAAAACGGCGGAGTACTGCAGACAGCACGCCATGG
ACGGGATGGTCAACGTCCGGGTTAAGACCTGTACTCACGAAGGCTGTATC
AAGTACCCCTTGTTCGGCGTGGCCGGCACAAAAACGGCGAAGTTTTGCAG
ACAGCACGCCCTGGACGGGATGGTTCACGTCAAATTAAAGAGATGTCTCC
ATAGCAAATGTATCAAGGTCCCGGTGTTCGGCATGGCTGGCACAAAAACG
GGAAAATACTGCAAACAGCACGCCATGGACGGGATGGTTAACCTTAAATT
GAAGAGATGTCTCCATAGCAAATGTATCAAGATCCCGTTGTTCGGCGTGG
CCGGCACAAAAACGGCTAAGTACTGCAGACAGCACGCCATGGACGGGATG
GTTGATGTCCGCAACAGGATATGTATCCACGAAGGCTGTATCAAGTTACC
CTCGTTCGGCATGGCTGGTACCAAAATGGCGGAGTTTTGCAGACAGCACG
CCATGGACGGGATGGTTAACGTCAAATTGAAGAGATGTCTCCATAGCAAA
TGTGCCAAGGTCTCGTCGTTCGGCGTGGTCGGCTCAAAAACGGCTGAATA
CTGCAGGCAGCACGCCATGGACGGGATGGTTCGCGTCAAATTAAAGATAT
GTCTCCACAGCAAATGTATCAAGGCCCCGGCGTTCGGCGTGGTCGGCACA
AAAACGGCGAAGTACTGCAGACAGCACGCCATGGACGGGATGGTTAACGT
CACATTGAAGAGATGTCTCCATAGCAAATGTATCAAGGTCCCGGTGTTCG
GCCTGGCCAGCACAAAAACGGGAAAATACTGCAGACAGCACGCCATGGAC
GGGATGGTTAACGTCAAATTGAAGAGATGTCTCCATAGCAAATGTATCAA
GATCCCGGTTTTCGGCGTGGCCGGCACAAAAACGGCTGAGTACTGCAGAC
AGCACGCCATGGACGAGATGGTTGATGTCCGCAACAAGATATGTACCCAC
GTAGGCTGTATCAAGTCATCCTCGTTCGGCATGGCTGGCACCAAAATGGC
AGAGTTTTGCAGACAGCACGCCATGGACGGGATGGTCAACGTCAGATTGA
AGAGATGTCTCCATAGCAAATGTACCAAGGTCCCGGCGTTCGGCGTGGCC
AGCACCAAAACGGCTAAGTACTGCAGGCAGCACGCCATGGACGGGATGGT
TCGCGTCAAATTAAAGACATGTCTCCATAGCAATTGTATGAAGGTCCCGG
CGTTCGGCGTGGCGGGCACAAAAACGGCGAAGTACTGTAGACAGCACGCG
ATGGACGGGATGGTTAACGTCAAATTGAAGAGATGTCTCCATAGCAAATG
TATCAAGCTCTCGGTGTTCGGCGTGGCCGGCACAAAAACGGCTGAGTACT
GCAGACAGCACGCCATGGATGAGATGGTTGATGTCCGCAAGAAGATATGT
ACCCACGTAGGCTGTATCAAGTCATCCTCGTTCGGCATAGCTGGCACCAA
AATGGCGGAGTTTTGCAGACAGCACGCCATGGACGGGATGGTCAACGTCA
GATTGAAGAGGTGTGTCCATCGCGAATGCACCAAGGTCCCGTCGTTCGGC
GTGGCCGGTACAAAAACGGCAATATACTGTAGAGAGCATAAAATGGATGG
GATGGTCGACATCCTCAACAAGATCTGTATCCACGAAGGGTGCATTACGA
TAGCGTCTTTCGGTACACCAGGAACCAGAACGGTGGAATACTGCAAACAG
CACGCCGGCGATGGGATGGTGAACGTTCGTAAAAATAAAAAAATGTGCAC
CCACCAATTCTGCACTAATCGGACATATTTCGGCTTGGCCGGTGCCAGAA
AAGCCGAGTACTGCAAGCAGCATACCCCTGATGGGACGATCGATATCCAT
CACAGGAGGTGTGCCAACGGAAAATACATTGTGAACGCGAGTCCGACAGG
CGTAAAACGGAAAAGCTTTGATCCTTTTCCCGCCCAAAAAATCGTTCATC
CGGGCGATAGCGGGGATTCTCGAACGCGAGCACGTCATCTAGACATATCT
AGTGCGGCTTCGACGCTAGTCGTTGCACGAGAATCAACTGCAGCAGCGAT
AACTATGCCGGCGACCGACGAACAAATATCTTCCGTTGCACAAGATCCAT
CTGTGAAGACGGAGTTGCGGCTCTTCTTGTAG
back to top