mRNA_H-elongata_contig49641.12167.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49641.12167.1
Unique NamemRNA_H-elongata_contig49641.12167.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig49641.12167.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 62.0 bits (149), Expect = 6.550e-9
Identity = 40/90 (44.44%), Postives = 48/90 (53.33%), Query Frame = 1 
Query:   58 PVGGSLRMDITTKREALLCH--DDNTKGLLLDVTVTNPMGIFHLVSSTRRGGNALRLAKKRRIDTYEGFFYPATYTFQTLAFFTCGDVGQ 321
            P  GSLRMD+ T   AL     D  +  L+LDVTVTNP+G   L  +  R G AL  A K +   Y G + P TY    LAF TCGD  +
Sbjct: 1880 PGQGSLRMDVVTDHGALFNESADYKSSALMLDVTVTNPLGPMALARAGTRAGFALEEAVKAKQAKYGGSYRP-TYKMIPLAFSTCGDYSK 1968
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49641.12167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6P0N5L4_9CYAN6.550e-944.44Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49641contigH-elongata_contig49641:1774..2097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size325
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930817.3268979-CDS-H-elongata_contig49641:1773..20971622930817.3268979-CDS-H-elongata_contig49641:1773..2097Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49641 1774..2097 +
1691679582.895461-CDS-H-elongata_contig49641:1773..20971691679582.895461-CDS-H-elongata_contig49641:1773..2097Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49641 1774..2097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49641.12167.1prot_H-elongata_contig49641.12167.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49641 1774..2097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49641.12167.1

>prot_H-elongata_contig49641.12167.1 ID=prot_H-elongata_contig49641.12167.1|Name=mRNA_H-elongata_contig49641.12167.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
NKWPARSSATAVSRTTSIAPVGGSLRMDITTKREALLCHDDNTKGLLLDV
TVTNPMGIFHLVSSTRRGGNALRLAKKRRIDTYEGFFYPATYTFQTLAFF
TCGDVGQA
back to top

mRNA from alignment at H-elongata_contig49641:1774..2097+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49641.12167.1 ID=mRNA_H-elongata_contig49641.12167.1|Name=mRNA_H-elongata_contig49641.12167.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at H-elongata_contig49641:1774..2097+ (Himanthalia elongata Himel1 dioecious)
AACAAGTGGCCAGCAAGGTCCTCCGCGACTGCAGTGTCTCGCACCACATC
GATCGCGCCGGTAGGAGGATCGCTCCGTATGGACATCACGACGAAACGGG
AAGCCTTACTCTGCCACGATGACAACACGAAGGGCCTCCTCCTCGACGTC
ACGGTCACCAACCCCATGGGCATCTTCCATCTGGTCAGCTCCACCCGACG
GGGTGGCAACGCCCTCCGCTTGGCGAAGAAGCGTAGGATTGACACGTATG
AAGGATTTTTTTATCCCGCTACCTACACCTTTCAGACTCTTGCGTTCTTC
ACCTGCGGTGATGTCGGCCAGGCC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig49641:1774..2097+

>mRNA_H-elongata_contig49641.12167.1 ID=mRNA_H-elongata_contig49641.12167.1|Name=mRNA_H-elongata_contig49641.12167.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig49641:1774..2097+ (Himanthalia elongata Himel1 dioecious)
AACAAGTGGCCAGCAAGGTCCTCCGCGACTGCAGTGTCTCGCACCACATC
GATCGCGCCGGTAGGAGGATCGCTCCGTATGGACATCACGACGAAACGGG
AAGCCTTACTCTGCCACGATGACAACACGAAGGGCCTCCTCCTCGACGTC
ACGGTCACCAACCCCATGGGCATCTTCCATCTGGTCAGCTCCACCCGACG
GGGTGGCAACGCCCTCCGCTTGGCGAAGAAGCGTAGGATTGACACGTATG
AAGGATTTTTTTATCCCGCTACCTACACCTTTCAGACTCTTGCGTTCTTC
ACCTGCGGTGATGTCGGCCAGGCCAACAAGTGGCCAGCAAGGTCCTCCGC
GACTGCAGTGTCTCGCACCACATCGATCGCGCCGGTAGGAGGATCGCTCC
GTATGGACATCACGACGAAACGGGAAGCCTTACTCTGCCACGATGACAAC
ACGAAGGGCCTCCTCCTCGACGTCACGGTCACCAACCCCATGGGCATCTT
CCATCTGGTCAGCTCCACCCGACGGGGTGGCAACGCCCTCCGCTTGGCGA
AGAAGCGTAGGATTGACACGTATGAAGGATTTTTTTATCCCGCTACCTAC
ACCTTTCAGACTCTTGCGTTCTTCACCTGCGGTGATGTCGGCCAGGCC
back to top