mRNA_H-elongata_contig49641.12166.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49641.12166.1
Unique NamemRNA_H-elongata_contig49641.12166.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49641.12166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49641contigH-elongata_contig49641:711..1044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size334
Cds size330
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930817.2493203-UTR-H-elongata_contig49641:710..7141622930817.2493203-UTR-H-elongata_contig49641:710..714Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49641 711..714 +
1691679582.874492-UTR-H-elongata_contig49641:710..7141691679582.874492-UTR-H-elongata_contig49641:710..714Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig49641 711..714 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930817.2760901-CDS-H-elongata_contig49641:714..10441622930817.2760901-CDS-H-elongata_contig49641:714..1044Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49641 715..1044 +
1691679582.883443-CDS-H-elongata_contig49641:714..10441691679582.883443-CDS-H-elongata_contig49641:714..1044Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49641 715..1044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49641.12166.1prot_H-elongata_contig49641.12166.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49641 715..1044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49641.12166.1

>prot_H-elongata_contig49641.12166.1 ID=prot_H-elongata_contig49641.12166.1|Name=mRNA_H-elongata_contig49641.12166.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
MEEFDRMLEWSLPTAIAGPRVGVAVLASPDQVRDDPSACQRQHLLGKRRH
CLDTPPNPEEGYGLTSSADIRTLPLSAARRLSYYSVSSGEGCEAGRACLS
GASAEHPLCR
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mRNA from alignment at H-elongata_contig49641:711..1044+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49641.12166.1 ID=mRNA_H-elongata_contig49641.12166.1|Name=mRNA_H-elongata_contig49641.12166.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=334bp|location=Sequence derived from alignment at H-elongata_contig49641:711..1044+ (Himanthalia elongata Himel1 dioecious)
CCCGATGGAGGAGTTCGACCGCATGCTCGAGTGGAGTTTACCGACCGCCA
TCGCCGGCCCCAGAGTGGGCGTGGCAGTACTTGCATCCCCCGATCAAGTC
CGCGACGACCCATCGGCCTGTCAACGGCAGCACCTGCTAGGAAAAAGACG
TCATTGCCTAGACACGCCTCCCAATCCGGAAGAGGGATATGGTTTAACCA
GTAGCGCCGACATCCGCACGCTCCCTTTATCGGCAGCCAGGCGCTTGTCC
TATTATAGCGTGAGCAGTGGCGAAGGTTGCGAGGCCGGACGTGCCTGTCT
TTCTGGAGCGTCTGCCGAACACCCCCTGTGCCGC
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Coding sequence (CDS) from alignment at H-elongata_contig49641:711..1044+

>mRNA_H-elongata_contig49641.12166.1 ID=mRNA_H-elongata_contig49641.12166.1|Name=mRNA_H-elongata_contig49641.12166.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig49641:711..1044+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGAGTTCGACCGCATGCTCGAGTGGAGTTTACCGACCGCCATCGC
CGGCCCCAGAGTGGGCGTGGCAGTACTTGCATCCCCCGATCAAGTCCGCG
ACGACCCATCGGCCTGTCAACGGCAGCACCTGCTAGGAAAAAGACGTCAT
TGCCTAGACACGCCTCCCAATCCGGAAGAGGGATATGGTTTAACCAGTAG
CGCCGACATCCGCACGCTCCCTTTATCGGCAGCCAGGCGCTTGTCCTATT
ATAGCGTGAGCAGTGGCGAAGGTTGCGAGGCCGGACGTGCCTGTCTTTCT
GGAGCGTCTGCCGAACACCCCCTGTGCCGCATGGAGGAGTTCGACCGCAT
GCTCGAGTGGAGTTTACCGACCGCCATCGCCGGCCCCAGAGTGGGCGTGG
CAGTACTTGCATCCCCCGATCAAGTCCGCGACGACCCATCGGCCTGTCAA
CGGCAGCACCTGCTAGGAAAAAGACGTCATTGCCTAGACACGCCTCCCAA
TCCGGAAGAGGGATATGGTTTAACCAGTAGCGCCGACATCCGCACGCTCC
CTTTATCGGCAGCCAGGCGCTTGTCCTATTATAGCGTGAGCAGTGGCGAA
GGTTGCGAGGCCGGACGTGCCTGTCTTTCTGGAGCGTCTGCCGAACACCC
CCTGTGCCGC
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