mRNA_H-elongata_contig49628.12163.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49628.12163.1
Unique NamemRNA_H-elongata_contig49628.12163.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49628.12163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49628contigH-elongata_contig49628:1730..2499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size771
Cds size768
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930817.0476177-CDS-H-elongata_contig49628:1729..24971622930817.0476177-CDS-H-elongata_contig49628:1729..2497Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49628 1730..2497 +
1691679582.7879734-CDS-H-elongata_contig49628:1729..24971691679582.7879734-CDS-H-elongata_contig49628:1729..2497Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49628 1730..2497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49628.12163.1prot_H-elongata_contig49628.12163.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49628 1730..2497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49628.12163.1

>prot_H-elongata_contig49628.12163.1 ID=prot_H-elongata_contig49628.12163.1|Name=mRNA_H-elongata_contig49628.12163.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=256bp
VCYASSPGIITPGRKSTASVAVARAAAGRATCAEVGTAAAVATGEEETST
DRDIGGGGVGGKESRKRRYDRNGGSGSGSLGFCTKDGGVASESNGSVRDA
EGTGGGGVGVDFSTMMVMTSPTDGDCAAKKGYPSSSSFLTGLDSWIRDSR
PLESVTALTSLKHDDDNAVAAAALTAITEITKVARKAPSCARRSSALAAA
VSAAREVLDTGARAAAEAEAKASQTKAQAASVAKVSGDGSFPTASAATSA
AGKSAM
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mRNA from alignment at H-elongata_contig49628:1730..2499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49628.12163.1 ID=mRNA_H-elongata_contig49628.12163.1|Name=mRNA_H-elongata_contig49628.12163.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=770bp|location=Sequence derived from alignment at H-elongata_contig49628:1730..2499+ (Himanthalia elongata Himel1 dioecious)
GTCTGCTACGCATCCAGTCCCGGCATCATTACCCCTGGACGTAAGAGTAC
CGCGTCAGTGGCCGTCGCTCGTGCTGCCGCTGGTCGTGCAACTTGTGCTG
AGGTTGGCACAGCAGCAGCGGTTGCAACTGGAGAAGAAGAGACGTCTACC
GACAGAGATATCGGCGGGGGTGGTGTTGGGGGGAAGGAATCACGAAAGAG
GAGGTATGACCGCAACGGTGGTAGCGGCAGCGGCAGCCTTGGGTTTTGCA
CGAAAGACGGAGGCGTCGCCTCGGAGAGCAACGGGTCCGTTCGCGACGCC
GAGGGGACTGGAGGCGGAGGCGTTGGCGTGGACTTCTCGACGATGATGGT
GATGACGTCACCGACCGACGGCGACTGCGCTGCAAAAAAAGGGTACCCAT
CGTCCTCCTCGTTTCTCACGGGCCTCGACAGCTGGATCCGCGATAGCCGT
CCTTTGGAGTCGGTGACGGCGTTAACCTCCTTAAAGCACGACGATGATAA
TGCGGTGGCAGCGGCGGCGTTGACGGCGATTACTGAGATTACCAAGGTGG
CGAGGAAGGCCCCGAGCTGCGCGCGAAGATCCTCGGCCCTTGCGGCGGCA
GTCAGCGCCGCGCGGGAGGTGCTAGATACCGGCGCGCGGGCCGCAGCGGA
GGCAGAAGCCAAGGCGTCTCAGACTAAGGCTCAGGCTGCAAGTGTGGCGA
AGGTCTCCGGTGATGGTTCTTTTCCTACCGCTTCTGCGGCTACCTCCGCC
GCGGGAAAATCAGCGATGGC
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Coding sequence (CDS) from alignment at H-elongata_contig49628:1730..2499+

>mRNA_H-elongata_contig49628.12163.1 ID=mRNA_H-elongata_contig49628.12163.1|Name=mRNA_H-elongata_contig49628.12163.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1536bp|location=Sequence derived from alignment at H-elongata_contig49628:1730..2499+ (Himanthalia elongata Himel1 dioecious)
GTCTGCTACGCATCCAGTCCCGGCATCATTACCCCTGGACGTAAGAGTAC
CGCGTCAGTGGCCGTCGCTCGTGCTGCCGCTGGTCGTGCAACTTGTGCTG
AGGTTGGCACAGCAGCAGCGGTTGCAACTGGAGAAGAAGAGACGTCTACC
GACAGAGATATCGGCGGGGGTGGTGTTGGGGGGAAGGAATCACGAAAGAG
GAGGTATGACCGCAACGGTGGTAGCGGCAGCGGCAGCCTTGGGTTTTGCA
CGAAAGACGGAGGCGTCGCCTCGGAGAGCAACGGGTCCGTTCGCGACGCC
GAGGGGACTGGAGGCGGAGGCGTTGGCGTGGACTTCTCGACGATGATGGT
GATGACGTCACCGACCGACGGCGACTGCGCTGCAAAAAAAGGGTACCCAT
CGTCCTCCTCGTTTCTCACGGGCCTCGACAGCTGGATCCGCGATAGCCGT
CCTTTGGAGTCGGTGACGGCGTTAACCTCCTTAAAGCACGACGATGATAA
TGCGGTGGCAGCGGCGGCGTTGACGGCGATTACTGAGATTACCAAGGTGG
CGAGGAAGGCCCCGAGCTGCGCGCGAAGATCCTCGGCCCTTGCGGCGGCA
GTCAGCGCCGCGCGGGAGGTGCTAGATACCGGCGCGCGGGCCGCAGCGGA
GGCAGAAGCCAAGGCGTCTCAGACTAAGGCTCAGGCTGCAAGTGTGGCGA
AGGTCTCCGGTGATGGTTCTTTTCCTACCGCTTCTGCGGCTACCTCCGCC
GCGGGAAAATCAGCGATGGTCTGCTACGCATCCAGTCCCGGCATCATTAC
CCCTGGACGTAAGAGTACCGCGTCAGTGGCCGTCGCTCGTGCTGCCGCTG
GTCGTGCAACTTGTGCTGAGGTTGGCACAGCAGCAGCGGTTGCAACTGGA
GAAGAAGAGACGTCTACCGACAGAGATATCGGCGGGGGTGGTGTTGGGGG
GAAGGAATCACGAAAGAGGAGGTATGACCGCAACGGTGGTAGCGGCAGCG
GCAGCCTTGGGTTTTGCACGAAAGACGGAGGCGTCGCCTCGGAGAGCAAC
GGGTCCGTTCGCGACGCCGAGGGGACTGGAGGCGGAGGCGTTGGCGTGGA
CTTCTCGACGATGATGGTGATGACGTCACCGACCGACGGCGACTGCGCTG
CAAAAAAAGGGTACCCATCGTCCTCCTCGTTTCTCACGGGCCTCGACAGC
TGGATCCGCGATAGCCGTCCTTTGGAGTCGGTGACGGCGTTAACCTCCTT
AAAGCACGACGATGATAATGCGGTGGCAGCGGCGGCGTTGACGGCGATTA
CTGAGATTACCAAGGTGGCGAGGAAGGCCCCGAGCTGCGCGCGAAGATCC
TCGGCCCTTGCGGCGGCAGTCAGCGCCGCGCGGGAGGTGCTAGATACCGG
CGCGCGGGCCGCAGCGGAGGCAGAAGCCAAGGCGTCTCAGACTAAGGCTC
AGGCTGCAAGTGTGGCGAAGGTCTCCGGTGATGGTTCTTTTCCTACCGCT
TCTGCGGCTACCTCCGCCGCGGGAAAATCAGCGATG
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