mRNA_H-elongata_contig4962.12162.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4962.12162.1
Unique NamemRNA_H-elongata_contig4962.12162.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig4962.12162.1 vs. uniprot
Match: A0A6G0VSC6_APHCR (Zinc finger BED domain-containing protein 1-like (Fragment) n=1 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0VSC6_APHCR)

HSP 1 Score: 70.5 bits (171), Expect = 2.030e-14
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1
Query:    1 HRHEFPLLYRVACVYLAVPATSASSERVFSTAGNVVTKKRNRLSPESVQRLVFL 162
            H  ++PL+  +A  YL++PATS SSER FSTAGNVVT KRN L+PE+V  LVFL
Sbjct:   48 HEKKYPLIAELAKKYLSIPATSVSSERCFSTAGNVVTSKRNCLAPENVNMLVFL 101          
BLAST of mRNA_H-elongata_contig4962.12162.1 vs. uniprot
Match: R7TXQ1_CAPTE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TXQ1_CAPTE)

HSP 1 Score: 68.9 bits (167), Expect = 2.370e-14
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 HRHEFPLLYRVACVYLAVPATSASSERVFSTAGNVVTKKRNRLSPESVQRLVFL 162
            +   FP +  +A  YLA+PATSA SERVFSTAGN+VT KR+RL+PE V  LVFL
Sbjct:    2 YERNFPRIALLAKKYLAIPATSAPSERVFSTAGNIVTPKRSRLNPEKVNMLVFL 55          
BLAST of mRNA_H-elongata_contig4962.12162.1 vs. uniprot
Match: A0A2S2P4C5_SCHGA (Zinc finger BED domain-containing protein 1 (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2P4C5_SCHGA)

HSP 1 Score: 70.1 bits (170), Expect = 2.600e-14
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 1
Query:    1 HRHEFPLLYRVACVYLAVPATSASSERVFSTAGNVVTKKRNRLSPESVQRLVFL 162
            H  ++PL+ +VA  +L++PATS SSER FSTAGNVVT KRN L+PE+V  LVFL
Sbjct:   44 HEKKYPLVAKVAKKFLSIPATSVSSERCFSTAGNVVTPKRNCLAPENVNMLVFL 97          
BLAST of mRNA_H-elongata_contig4962.12162.1 vs. uniprot
Match: UPI001113C14C (zinc finger BED domain-containing protein 1-like n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=UPI001113C14C)

HSP 1 Score: 68.9 bits (167), Expect = 1.020e-13
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 HRHEFPLLYRVACVYLAVPATSASSERVFSTAGNVVTKKRNRLSPESVQRLVFL 162
            H  ++PL+  +   YL++PATS SSER FSTAGNVVT KRN L+PE+V  LVFL
Sbjct:   61 HEKKYPLIAELVKKYLSIPATSVSSERCFSTAGNVVTSKRNCLAPENVNMLVFL 114          
BLAST of mRNA_H-elongata_contig4962.12162.1 vs. uniprot
Match: E2BS40_HARSA (Zinc finger BED domain-containing protein 1 (Fragment) n=2 Tax=Harpegnathos saltator TaxID=610380 RepID=E2BS40_HARSA)

HSP 1 Score: 65.1 bits (157), Expect = 1.040e-12
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 1
Query:    1 HRHEFPLLYRVACVYLAVPATSASSERVFSTAGNVVTKKRNRLSPESVQRLVFL 162
            H + +P++  +  VYLA+ A+SASSERVFSTAGN+VT KRN LS E+V  L+FL
Sbjct:    9 HENLYPMIAALTKVYLAILASSASSERVFSTAGNIVTAKRNCLSTENVNLLIFL 62          
BLAST of mRNA_H-elongata_contig4962.12162.1 vs. uniprot
Match: A0A0A1WDS8_ZEUCU (Transposable element Hobo transposase n=1 Tax=Zeugodacus cucurbitae TaxID=28588 RepID=A0A0A1WDS8_ZEUCU)

HSP 1 Score: 67.0 bits (162), Expect = 1.240e-12
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 1
Query:    1 HRHEFPLLYRVACVYLAVPATSASSERVFSTAGNVVTKKRNRLSPESVQRLVFL 162
            + + +PLL +VA  +L +PA+SA +ERVFS AGNV+T+KRNRL P SV  L+FL
Sbjct:   88 NENRYPLLSKVALKFLTIPASSAPAERVFSLAGNVITEKRNRLGPTSVDNLLFL 141          
BLAST of mRNA_H-elongata_contig4962.12162.1 vs. uniprot
Match: UPI0014461CE7 (zinc finger BED domain-containing protein DAYSLEEPER-like n=1 Tax=Epinephelus lanceolatus TaxID=310571 RepID=UPI0014461CE7)

HSP 1 Score: 67.0 bits (162), Expect = 1.610e-12
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 HRHEFPLLYRVACVYLAVPATSASSERVFSTAGNVVTKKRNRLSPESVQRLVFL 162
            H+  +P L ++A  YL++PATSA SERVFST GN+VT  R+ L PESV RLVFL
Sbjct:  108 HQRVYPRLSKLAKKYLSIPATSAPSERVFSTGGNIVTCLRSSLKPESVDRLVFL 161          
BLAST of mRNA_H-elongata_contig4962.12162.1 vs. uniprot
Match: UPI000DC12F9E (zinc finger BED domain-containing protein 1-like n=1 Tax=Melanaphis sacchari TaxID=742174 RepID=UPI000DC12F9E)

HSP 1 Score: 65.9 bits (159), Expect = 1.820e-12
Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 HRHEFPLLYRVACVYLAVPATSASSERVFSTAGNVVTKKRNRLSPESVQRLVFL 162
            H  ++PL+  +A  YL +PATS SSER FSTAGN+V+ KR+ L+PE+V  L+FL
Sbjct:   62 HTSKYPLIVALAMKYLGIPATSVSSERCFSTAGNIVSAKRSCLAPETVNMLIFL 115          
BLAST of mRNA_H-elongata_contig4962.12162.1 vs. uniprot
Match: UPI0018ACE819 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Kryptolebias marmoratus TaxID=37003 RepID=UPI0018ACE819)

HSP 1 Score: 66.2 bits (160), Expect = 2.140e-12
Identity = 30/54 (55.56%), Postives = 42/54 (77.78%), Query Frame = 1
Query:    1 HRHEFPLLYRVACVYLAVPATSASSERVFSTAGNVVTKKRNRLSPESVQRLVFL 162
            H++E+PLL  +A  YL +P TS SSERVFSTAG+++T +R+ L PE V ++VFL
Sbjct:   85 HQYEYPLLSHLAKRYLCIPGTSVSSERVFSTAGDIITAQRSALLPEHVDQIVFL 138          
BLAST of mRNA_H-elongata_contig4962.12162.1 vs. uniprot
Match: UPI001471CDEF (zinc finger BED domain-containing protein 1-like n=1 Tax=Thalassophryne amazonica TaxID=390379 RepID=UPI001471CDEF)

HSP 1 Score: 68.9 bits (167), Expect = 2.540e-12
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 1
Query:    1 HRHEFPLLYRVACVYLAVPATSASSERVFSTAGNVVTKKRNRLSPESVQRLVFL 162
            H+ E+PLL R+A  YL +P TS SSERVFSTAG++VT +R+ L+PE V +L+FL
Sbjct:  346 HQTEYPLLSRLAKTYLCIPGTSVSSERVFSTAGDIVTAQRSALNPEHVDQLLFL 399          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4962.12162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0VSC6_APHCR2.030e-1462.96Zinc finger BED domain-containing protein 1-like (... [more]
R7TXQ1_CAPTE2.370e-1462.96Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ca... [more]
A0A2S2P4C5_SCHGA2.600e-1462.96Zinc finger BED domain-containing protein 1 (Fragm... [more]
UPI001113C14C1.020e-1361.11zinc finger BED domain-containing protein 1-like n... [more]
E2BS40_HARSA1.040e-1259.26Zinc finger BED domain-containing protein 1 (Fragm... [more]
A0A0A1WDS8_ZEUCU1.240e-1257.41Transposable element Hobo transposase n=1 Tax=Zeug... [more]
UPI0014461CE71.610e-1261.11zinc finger BED domain-containing protein DAYSLEEP... [more]
UPI000DC12F9E1.820e-1255.56zinc finger BED domain-containing protein 1-like n... [more]
UPI0018ACE8192.140e-1255.56E3 SUMO-protein ligase ZBED1-like n=1 Tax=Kryptole... [more]
UPI001471CDEF2.540e-1259.26zinc finger BED domain-containing protein 1-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4962contigH-elongata_contig4962:11747..11908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score67.8
Seed ortholog evalue1.8e-09
Seed eggNOG ortholog69319.XP_008556097.1
EggNOG free text desc.Zinc finger BED domain-containing protein
EggNOG OGs39SKR@33154,3BBS9@33208,3CUF3@33213,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930817.0002074-CDS-H-elongata_contig4962:11746..119081622930817.0002074-CDS-H-elongata_contig4962:11746..11908Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4962 11747..11908 -
1691679582.773877-CDS-H-elongata_contig4962:11746..119081691679582.773877-CDS-H-elongata_contig4962:11746..11908Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4962 11747..11908 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4962.12162.1prot_H-elongata_contig4962.12162.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4962 11747..11908 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4962.12162.1

>prot_H-elongata_contig4962.12162.1 ID=prot_H-elongata_contig4962.12162.1|Name=mRNA_H-elongata_contig4962.12162.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
HRHEFPLLYRVACVYLAVPATSASSERVFSTAGNVVTKKRNRLSPESVQR
LVFL
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mRNA from alignment at H-elongata_contig4962:11747..11908-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4962.12162.1 ID=mRNA_H-elongata_contig4962.12162.1|Name=mRNA_H-elongata_contig4962.12162.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig4962:11747..11908- (Himanthalia elongata Himel1 dioecious)
CACAGGCATGAATTCCCGCTGCTGTACAGGGTGGCATGTGTCTACCTCGC AGTGCCCGCCACTTCAGCATCATCAGAGCGCGTCTTCTCTACAGCGGGGA ACGTCGTGACGAAGAAGAGGAACAGACTGTCGCCCGAGTCTGTTCAAAGA TTGGTTTTCCTC
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Coding sequence (CDS) from alignment at H-elongata_contig4962:11747..11908-

>mRNA_H-elongata_contig4962.12162.1 ID=mRNA_H-elongata_contig4962.12162.1|Name=mRNA_H-elongata_contig4962.12162.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig4962:11747..11908- (Himanthalia elongata Himel1 dioecious)
CACAGGCATGAATTCCCGCTGCTGTACAGGGTGGCATGTGTCTACCTCGC
AGTGCCCGCCACTTCAGCATCATCAGAGCGCGTCTTCTCTACAGCGGGGA
ACGTCGTGACGAAGAAGAGGAACAGACTGTCGCCCGAGTCTGTTCAAAGA
TTGGTTTTCCTCCACAGGCATGAATTCCCGCTGCTGTACAGGGTGGCATG
TGTCTACCTCGCAGTGCCCGCCACTTCAGCATCATCAGAGCGCGTCTTCT
CTACAGCGGGGAACGTCGTGACGAAGAAGAGGAACAGACTGTCGCCCGAG
TCTGTTCAAAGATTGGTTTTCCTC
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