mRNA_H-elongata_contig4959.12157.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4959.12157.1
Unique NamemRNA_H-elongata_contig4959.12157.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig4959.12157.1 vs. uniprot
Match: D7FKH6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKH6_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 3.950e-21
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 ALEVTFRLVDQVDDHFGRSHGVYASALNDMALMMKSMGQHQEATEVYLKALEV 159
            ALEV  RLVDQVDDHFGR+HGVY SAL+DMALM+KSMG+HQEATE YLKALEV
Sbjct:  153 ALEVAERLVDQVDDHFGRAHGVYGSALSDMALMLKSMGRHQEATETYLKALEV 205
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BLAST of mRNA_H-elongata_contig4959.12157.1 vs. uniprot
Match: A0A1V9Z175_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z175_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 9.490e-7
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 ALEVTFRLVDQVDDHFGRSHGVYASALNDMALMMKSMGQHQEATEVYLKALEV 159
            AL++     D+V +HFG+ H VYAS LN+MALM K+M Q  EA   Y +AL V
Sbjct:  303 ALDMATICRDRVAEHFGKDHPVYASTLNNMALMQKNMSQLTEAIATYEEALRV 355
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BLAST of mRNA_H-elongata_contig4959.12157.1 vs. uniprot
Match: A0A024UG34_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UG34_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.260e-6
Identity = 27/52 (51.92%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:    4 LEVTFRLVDQVDDHFGRSHGVYASALNDMALMMKSMGQHQEATEVYLKALEV 159
            LE+     D V DHFG  H VYAS LN++ALM K++ Q  EA E Y  AL V
Sbjct:   72 LEMAEICRDAVRDHFGDDHPVYASTLNNLALMQKNLSQLDEAIESYEAALRV 123
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BLAST of mRNA_H-elongata_contig4959.12157.1 vs. uniprot
Match: A0A067CX27_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CX27_SAPPC)

HSP 1 Score: 50.4 bits (119), Expect = 8.290e-6
Identity = 25/53 (47.17%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:    1 ALEVTFRLVDQVDDHFGRSHGVYASALNDMALMMKSMGQHQEATEVYLKALEV 159
            AL++     D V DHFG  H VYAS LN++ALM K++ Q  +A   Y +AL V
Sbjct:   75 ALDMALICRDTVKDHFGNDHPVYASTLNNIALMQKNLSQLTDAIATYEEALRV 127
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BLAST of mRNA_H-elongata_contig4959.12157.1 vs. uniprot
Match: A0A3R6YC42_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YC42_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.460e-6
Identity = 27/52 (51.92%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:    4 LEVTFRLVDQVDDHFGRSHGVYASALNDMALMMKSMGQHQEATEVYLKALEV 159
            LE+     D V DHFG  H VYAS LN++ALM K++ Q  EA E Y  AL V
Sbjct:  164 LEMAEICRDAVRDHFGDDHPVYASTLNNLALMQKNLSQLDEAIESYEAALRV 215
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BLAST of mRNA_H-elongata_contig4959.12157.1 vs. uniprot
Match: A0A1V9Z3R8_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z3R8_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.510e-6
Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:    1 ALEVTFRLVDQVDDHFGRSHGVYASALNDMALMMKSMGQHQEATEVYLKALEV 159
            AL++     D V +HFG  H VYAS LN++ALM K++ +  EA E Y +AL V
Sbjct:  297 ALDIAEICRDNVKEHFGTEHPVYASTLNNIALMQKNLSKLTEAIETYEEALRV 349
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4959.12157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FKH6_ECTSI3.950e-2184.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1V9Z175_9STRA9.490e-750.94Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A024UG34_9STRA8.260e-651.92Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A067CX27_SAPPC8.290e-647.17Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A3R6YC42_9STRA8.460e-651.92Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1V9Z3R8_9STRA8.510e-647.17Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4959contigH-elongata_contig4959:11416..11574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue3e-17
Seed eggNOG ortholog2880.D7FKH6
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930816.6253998-CDS-H-elongata_contig4959:11415..115741622930816.6253998-CDS-H-elongata_contig4959:11415..11574Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4959 11416..11574 +
1691679582.6286216-CDS-H-elongata_contig4959:11415..115741691679582.6286216-CDS-H-elongata_contig4959:11415..11574Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4959 11416..11574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4959.12157.1prot_H-elongata_contig4959.12157.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4959 11416..11574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4959.12157.1

>prot_H-elongata_contig4959.12157.1 ID=prot_H-elongata_contig4959.12157.1|Name=mRNA_H-elongata_contig4959.12157.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
ALEVTFRLVDQVDDHFGRSHGVYASALNDMALMMKSMGQHQEATEVYLKA
LEV
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mRNA from alignment at H-elongata_contig4959:11416..11574+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4959.12157.1 ID=mRNA_H-elongata_contig4959.12157.1|Name=mRNA_H-elongata_contig4959.12157.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig4959:11416..11574+ (Himanthalia elongata Himel1 dioecious)
GCTCTGGAAGTGACCTTCCGGCTGGTGGATCAGGTCGACGATCACTTCGG
AAGGTCTCACGGCGTCTACGCAAGTGCTCTAAACGACATGGCCCTAATGA
TGAAGTCCATGGGGCAGCATCAGGAAGCCACGGAAGTGTACCTCAAGGCA
TTGGAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig4959:11416..11574+

>mRNA_H-elongata_contig4959.12157.1 ID=mRNA_H-elongata_contig4959.12157.1|Name=mRNA_H-elongata_contig4959.12157.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig4959:11416..11574+ (Himanthalia elongata Himel1 dioecious)
GCTCTGGAAGTGACCTTCCGGCTGGTGGATCAGGTCGACGATCACTTCGG
AAGGTCTCACGGCGTCTACGCAAGTGCTCTAAACGACATGGCCCTAATGA
TGAAGTCCATGGGGCAGCATCAGGAAGCCACGGAAGTGTACCTCAAGGCA
TTGGAGGTGGCTCTGGAAGTGACCTTCCGGCTGGTGGATCAGGTCGACGA
TCACTTCGGAAGGTCTCACGGCGTCTACGCAAGTGCTCTAAACGACATGG
CCCTAATGATGAAGTCCATGGGGCAGCATCAGGAAGCCACGGAAGTGTAC
CTCAAGGCATTGGAGGTG
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