mRNA_H-elongata_contig49551.12147.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49551.12147.1
Unique NamemRNA_H-elongata_contig49551.12147.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49551.12147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49551contigH-elongata_contig49551:2667..3485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size396
Cds size396
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49551.12147.1prot_H-elongata_contig49551.12147.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49551 2667..3485 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930815.1897132-CDS-H-elongata_contig49551:2666..26921622930815.1897132-CDS-H-elongata_contig49551:2666..2692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49551 2667..2692 +
1691679581.961804-CDS-H-elongata_contig49551:2666..26921691679581.961804-CDS-H-elongata_contig49551:2666..2692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49551 2667..2692 +
1622930815.2059815-CDS-H-elongata_contig49551:2844..31531622930815.2059815-CDS-H-elongata_contig49551:2844..3153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49551 2845..3153 +
1691679581.972472-CDS-H-elongata_contig49551:2844..31531691679581.972472-CDS-H-elongata_contig49551:2844..3153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49551 2845..3153 +
1622930815.2240055-CDS-H-elongata_contig49551:3424..34851622930815.2240055-CDS-H-elongata_contig49551:3424..3485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49551 3425..3485 +
1691679581.9830198-CDS-H-elongata_contig49551:3424..34851691679581.9830198-CDS-H-elongata_contig49551:3424..3485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49551 3425..3485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49551.12147.1

>prot_H-elongata_contig49551.12147.1 ID=prot_H-elongata_contig49551.12147.1|Name=mRNA_H-elongata_contig49551.12147.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
SSFGNYLKRYKFELQFDPPFHSIISNNSCGHFLSIPEISSWLGFKCAELQ
NILLCKLFDEFFWTAFGVERREYGKEHTQRFSLQGIGYILLSGLSERQRV
EIAKPATDPLYLTHCNGDAIAQSYKCPPSITP
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mRNA from alignment at H-elongata_contig49551:2667..3485+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49551.12147.1 ID=mRNA_H-elongata_contig49551.12147.1|Name=mRNA_H-elongata_contig49551.12147.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=819bp|location=Sequence derived from alignment at H-elongata_contig49551:2667..3485+ (Himanthalia elongata Himel1 dioecious)
TCATCGTTCGGCAACTACCTCAAACGGTTAGTGCACAAGTTTATGTTTGG
AAAGTATCCTTTTGGTGGGCCACGTACGATCAATCTTTATCTGTCGGTAG
GACATATAGGCAGTGCTATCTTGCAGTCGACTCACAGTTCCTCTGTTACC
GTGTTTTATTTTATTGCTGTATTGACAGTTACAAGTTCGAATTACAGTTC
GATCCACCATTCCATAGCATAATCTCCAACAACAGCTGCGGACACTTCCT
TAGTATTCCCGAGATAAGTTCATGGCTGGGTTTCAAGTGCGCTGAGTTAC
AAAACATTCTGTTGTGCAAATTATTTGACGAGTTCTTTTGGACCGCGTTC
GGCGTTGAGAGGAGGGAGTACGGCAAGGAGCATACACAGCGGTTCAGTCT
CCAAGGAATCGGTTACATCCTCCTGTCCGGTCTGAGTGAACGACAGCGGG
TGGAGATCGCCAAGCCAGCGACGGACCCCCTCTACCTGTAAGTTTGTTTT
TTTTGTCAGAGTTTATTACTAATAAGATGTGTGCAAATTGTGCAATGGGG
TAATCAAACAATAACTAAACTTAAGACACGTATGGGATACTCTTCGATCC
TTTTATTGTCCCATGCCGAGCCTCCGATCCCCATGTGTGCATACAAGTAC
AAGTATAAGTAATGTATGCCACCGATGCCTTAAATCGGGGAAGGTCCGAG
AAAATAGACATTTTAAAACAAAGCTTCTGACTTCGATCCCTTAGTCCGGA
CTCAACAGGACGCACTGTAACGGAGACGCTATCGCACAAAGCTACAAGTG
CCCTCCATCTATAACGCCC
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Coding sequence (CDS) from alignment at H-elongata_contig49551:2667..3485+

>mRNA_H-elongata_contig49551.12147.1 ID=mRNA_H-elongata_contig49551.12147.1|Name=mRNA_H-elongata_contig49551.12147.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig49551:2667..3485+ (Himanthalia elongata Himel1 dioecious)
TCATCGTTCGGCAACTACCTCAAACGTCATCGTTCGGCAACTACCTCAAA
CGTTACAAGTTCGAATTACAGTTCGATCCACCATTCCATAGCATAATCTC
CAACAACAGCTGCGGACACTTCCTTAGTATTCCCGAGATAAGTTCATGGC
TGGGTTTCAAGTGCGCTGAGTTACAAAACATTCTGTTGTGCAAATTATTT
GACGAGTTCTTTTGGACCGCGTTCGGCGTTGAGAGGAGGGAGTACGGCAA
GGAGCATACACAGCGGTTCAGTCTCCAAGGAATCGGTTACATCCTCCTGT
CCGGTCTGAGTGAACGACAGCGGGTGGAGATCGCCAAGCCAGCGACGGAC
CCCCTCTACCTTTACAAGTTCGAATTACAGTTCGATCCACCATTCCATAG
CATAATCTCCAACAACAGCTGCGGACACTTCCTTAGTATTCCCGAGATAA
GTTCATGGCTGGGTTTCAAGTGCGCTGAGTTACAAAACATTCTGTTGTGC
AAATTATTTGACGAGTTCTTTTGGACCGCGTTCGGCGTTGAGAGGAGGGA
GTACGGCAAGGAGCATACACAGCGGTTCAGTCTCCAAGGAATCGGTTACA
TCCTCCTGTCCGGTCTGAGTGAACGACAGCGGGTGGAGATCGCCAAGCCA
GCGACGGACCCCCTCTACCTGACGCACTGTAACGGAGACGCTATCGCACA
AAGCTACAAGTGCCCTCCATCTATAACGCCCGACGCACTGTAACGGAGAC
GCTATCGCACAAAGCTACAAGTGCCCTCCATCTATAACGCCC
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