mRNA_H-elongata_contig49540.12144.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49540.12144.1
Unique NamemRNA_H-elongata_contig49540.12144.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig49540.12144.1 vs. uniprot
Match: D8LDR2_ECTSI (Cas1_AcylT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDR2_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 8.590e-26
Identity = 52/79 (65.82%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:   13 LSPSRCRRA--GRHITVVGDSTERFVYYALLRSLGEATPNAHNTSIEKHSDFSWKASDDSGTRFDFLWAPFAQNLTDRV 243
            + PS    A  GR++ VVGDS  RFVY+AL+RSLGEATP AH+T+IEKHSDFSW+ASDD GTRF FLWAP  ++L +RV
Sbjct:  667 MPPSEVEEALKGRNVVVVGDSVNRFVYWALVRSLGEATPMAHDTTIEKHSDFSWQASDDWGTRFSFLWAPEVEDLNERV 745
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BLAST of mRNA_H-elongata_contig49540.12144.1 vs. uniprot
Match: A0A835YWF0_9STRA (10 TM acyl transferase domain found in Cas1p-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWF0_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.980e-15
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:    4 YQTLSPSRCRRAG--RHITVVGDSTERFVYYALLRSLGEATPNAHNTSIEKHSDFSWKASDDSG-TRFDFLWAPFAQNLT 234
            ++ L P    RA   RH+  VGDS  R +YYA LR +G+ TP AH++S E+H+D SW +   +G TR  F WAP+A+N+T
Sbjct:  639 FRYLPPDEIARASAARHVAFVGDSELRMMYYAALRGIGQTTPQAHDSSAERHADLSWASGTGAGATRVSFRWAPYARNVT 718
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BLAST of mRNA_H-elongata_contig49540.12144.1 vs. uniprot
Match: W9RMH3_9ROSA (Uncharacterized protein n=1 Tax=Morus notabilis TaxID=981085 RepID=W9RMH3_9ROSA)

HSP 1 Score: 54.7 bits (130), Expect = 1.260e-6
Identity = 37/90 (41.11%), Postives = 47/90 (52.22%), Query Frame = 1 
Query:    4 YQTLSPSRCRRA--GRHITVVGDSTERFVYYALLRSL---GEATPNAHNTSIEKHSDFSWKASDDSGTRFDFLWAPFAQNLTDRVRGGRR 258
            +QTLS S       G  I V GDS  RFV  +LLR L     +  +A     ++HSD+     +  G R DF+WAP+A NLTD V   RR
Sbjct:  118 FQTLSRSDASDLLNGSWIVVAGDSQARFVALSLLRLLLADSNSFDSAKVDLFKRHSDYQTLIPE-IGARLDFVWAPYADNLTDLVAAFRR 206
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BLAST of mRNA_H-elongata_contig49540.12144.1 vs. uniprot
Match: A0A7S0IB15_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0IB15_MICPS)

HSP 1 Score: 53.9 bits (128), Expect = 2.400e-6
Identity = 30/70 (42.86%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:   37 AGRHITVVGDSTERFVYYALLRSLGEATPNAHNTSIEKHSDFSWKASDDSGTRFDFLWAPFAQNLTDRVR 246
            AG  + VVGDS  R VY A+LR + +        + +KH D++   + D G    F WAPFAQN+T RVR
Sbjct:  144 AGETVAVVGDSAARMVYAAILRLVAKDPDAWRLDASQKHRDWTHPLAAD-GAVAKFAWAPFAQNVTSRVR 212
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BLAST of mRNA_H-elongata_contig49540.12144.1 vs. uniprot
Match: C1EA12_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EA12_MICCC)

HSP 1 Score: 53.9 bits (128), Expect = 2.410e-6
Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:   37 AGRHITVVGDSTERFVYYALLRSLGEATPNAHNTSIEKHSDFSWKASDDSGTRFDFLWAPFAQNLTDRVR 246
            AG  + VVGDS  R VY A+LR   +        + +KH D++ + + D G    F WAPFAQN+T R+R
Sbjct:  147 AGETVAVVGDSAARMVYAAILRLAAKDADAWRLDTSQKHRDWTHQLASD-GAVATFAWAPFAQNVTSRLR 215
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49540.12144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LDR2_ECTSI8.590e-2665.82Cas1_AcylT domain-containing protein n=2 Tax=Ectoc... [more]
A0A835YWF0_9STRA2.980e-1546.2510 TM acyl transferase domain found in Cas1p-domai... [more]
W9RMH3_9ROSA1.260e-641.11Uncharacterized protein n=1 Tax=Morus notabilis Ta... [more]
A0A7S0IB15_MICPS2.400e-642.86Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
C1EA12_MICCC2.410e-641.43Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49540contigH-elongata_contig49540:76..354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue2.4e-22
Seed eggNOG ortholog2880.D8LDR2
KEGG koko:K03377
GOsGO:0000271,GO:0001101,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005975,GO:0005976,GO:0006073,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009737,GO:0009832,GO:0009834,GO:0009987,GO:0010033,GO:0010383,GO:0010410,GO:0010411,GO:0012505,GO:0016051,GO:0033692,GO:0033993,GO:0034637,GO:0034645,GO:0042221,GO:0042546,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0045491,GO:0045492,GO:0050832,GO:0050896,GO:0051704,GO:0051707,GO:0070589,GO:0070592,GO:0071554,GO:0071669,GO:0071704,GO:0071840,GO:0097305,GO:0098542,GO:1901576,GO:1901700,GO:1990937
EggNOG free text desc.N-acetylneuraminate 7-O(or 9-O)-acetyltransferase activity
EggNOG OGsKOG1699@1,KOG1699@2759
EC2.3.1.45
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size279
Cds size279
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930814.757682-CDS-H-elongata_contig49540:75..3541622930814.757682-CDS-H-elongata_contig49540:75..354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49540 76..354 +
1691679581.7537787-CDS-H-elongata_contig49540:75..3541691679581.7537787-CDS-H-elongata_contig49540:75..354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49540 76..354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49540.12144.1prot_H-elongata_contig49540.12144.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49540 76..354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49540.12144.1

>prot_H-elongata_contig49540.12144.1 ID=prot_H-elongata_contig49540.12144.1|Name=mRNA_H-elongata_contig49540.12144.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MYQTLSPSRCRRAGRHITVVGDSTERFVYYALLRSLGEATPNAHNTSIEK
HSDFSWKASDDSGTRFDFLWAPFAQNLTDRVRGGRRWGKNNF*
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mRNA from alignment at H-elongata_contig49540:76..354+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49540.12144.1 ID=mRNA_H-elongata_contig49540.12144.1|Name=mRNA_H-elongata_contig49540.12144.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=279bp|location=Sequence derived from alignment at H-elongata_contig49540:76..354+ (Himanthalia elongata Himel1 dioecious)
ATGTACCAAACCCTTTCTCCTTCCCGCTGTCGACGAGCAGGACGGCATAT
CACCGTGGTGGGCGACTCGACCGAGAGATTCGTGTACTATGCTCTCCTCC
GGAGCTTGGGAGAGGCCACGCCAAACGCGCACAACACTTCGATTGAGAAG
CATTCGGATTTCTCGTGGAAGGCATCGGACGATTCCGGGACGCGCTTCGA
TTTCCTCTGGGCGCCGTTCGCACAAAATCTGACGGACCGGGTGAGGGGTG
GGCGGCGGTGGGGCAAAAACAATTTCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig49540:76..354+

>mRNA_H-elongata_contig49540.12144.1 ID=mRNA_H-elongata_contig49540.12144.1|Name=mRNA_H-elongata_contig49540.12144.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig49540:76..354+ (Himanthalia elongata Himel1 dioecious)
ATGTACCAAACCCTTTCTCCTTCCCGCTGTCGACGAGCAGGACGGCATAT
CACCGTGGTGGGCGACTCGACCGAGAGATTCGTGTACTATGCTCTCCTCC
GGAGCTTGGGAGAGGCCACGCCAAACGCGCACAACACTTCGATTGAGAAG
CATTCGGATTTCTCGTGGAAGGCATCGGACGATTCCGGGACGCGCTTCGA
TTTCCTCTGGGCGCCGTTCGCACAAAATCTGACGGACCGGGTGAGGGGTG
GGCGGCGGTGGGGCAAAAACAATTTCTAAATGTACCAAACCCTTTCTCCT
TCCCGCTGTCGACGAGCAGGACGGCATATCACCGTGGTGGGCGACTCGAC
CGAGAGATTCGTGTACTATGCTCTCCTCCGGAGCTTGGGAGAGGCCACGC
CAAACGCGCACAACACTTCGATTGAGAAGCATTCGGATTTCTCGTGGAAG
GCATCGGACGATTCCGGGACGCGCTTCGATTTCCTCTGGGCGCCGTTCGC
ACAAAATCTGACGGACCGGGTGAGGGGTGGGCGGCGGTGGGGCAAAAACA
ATTTCTAA
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