mRNA_H-elongata_contig4950.12139.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4950.12139.1
Unique NamemRNA_H-elongata_contig4950.12139.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig4950.12139.1 vs. uniprot
Match: A0A6H5L9W6_9PHAE (Fe2OG dioxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L9W6_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 7.740e-25
Identity = 47/75 (62.67%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    1 TNGHLRSTIHRVVNKLGRERYSIPFFYSPSFDTKVECLPQFCSEDDPAKYPPTTSGKYLMEKLSGLYS*AIRNQK 225
            TN  LRST+HRVVNKLGRERYSIPFF+  +FDT+V CLPQ CSE++PAKYPP T+G Y++ K S  +     NQ+
Sbjct:  243 TNDELRSTVHRVVNKLGRERYSIPFFFELNFDTEVVCLPQCCSEENPAKYPPVTAGSYILNKYSQTHQDFDGNQQ 317          
BLAST of mRNA_H-elongata_contig4950.12139.1 vs. uniprot
Match: D7FYW9_ECTSI (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW9_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 7.860e-25
Identity = 49/83 (59.04%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    1 TNGHLRSTIHRVVNKLGRERYSIPFFYSPSFDTKVECLPQFCSEDDPAKYPPTTSGKYLMEKLSGLYS*AIRNQKFSSEGKTS 249
            TN  LRST+HRVVNKLG ERYSIPFF+ P+FDT+V C PQFCSE++PA+YPP  +G YLM K S  +      Q  S+   TS
Sbjct:  242 TNDDLRSTVHRVVNKLGLERYSIPFFFEPNFDTEVACFPQFCSEENPARYPPVKAGAYLMGKYSQTHQDFDGYQPDSTASSTS 324          
BLAST of mRNA_H-elongata_contig4950.12139.1 vs. uniprot
Match: A0A7S4VMP6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VMP6_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 6.080e-22
Identity = 39/62 (62.90%), Postives = 50/62 (80.65%), Query Frame = 1
Query:    1 TNGHLRSTIHRVVNKLGRERYSIPFFYSPSFDTKVECLPQFCSEDDPAKYPPTTSGKYLMEK 186
            TNG  RST+HRV+    R+RYS+PFFY P+FDT+VECL   CS D+P KYPPTTSG++L++K
Sbjct:   78 TNGLFRSTVHRVLTSGDRDRYSVPFFYEPNFDTRVECLDVCCSPDNPPKYPPTTSGQHLLDK 139          
BLAST of mRNA_H-elongata_contig4950.12139.1 vs. uniprot
Match: A0A6A0A6S1_HAELA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A6A0A6S1_HAELA)

HSP 1 Score: 90.1 bits (222), Expect = 4.560e-21
Identity = 36/67 (53.73%), Postives = 51/67 (76.12%), Query Frame = 1
Query:    1 TNGHLRSTIHRVVNKLGRERYSIPFFYSPSFDTKVECLPQFCSEDDPAKYPPTTSGKYLMEKLSGLY 201
            TNG  RST+HRV+N   +ERYS+  F  P+FD +VECLPQ CS D PA+YPPTT+G+++++K +  +
Sbjct:   44 TNGRYRSTLHRVINTTDKERYSLAAFLDPNFDAQVECLPQCCSADRPARYPPTTAGQHILDKYAATH 110          
BLAST of mRNA_H-elongata_contig4950.12139.1 vs. uniprot
Match: A0A5J4Y7A5_9CHLO (Hyoscyamine 6-isoform 1 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y7A5_9CHLO)

HSP 1 Score: 94.0 bits (232), Expect = 1.080e-20
Identity = 40/67 (59.70%), Postives = 53/67 (79.10%), Query Frame = 1
Query:    1 TNGHLRSTIHRVVNKLGRERYSIPFFYSPSFDTKVECLPQFCSEDDPAKYPPTTSGKYLMEKLSGLY 201
            TNG+ +S++HRVVN LG+ERYS  FFY P+F  KVECLPQ C +D PAK+PPTT G+YL++K +  +
Sbjct:  259 TNGYFKSSLHRVVNHLGKERYSTAFFYEPNFFAKVECLPQ-CCKDKPAKFPPTTCGQYLLDKFAATH 324          
BLAST of mRNA_H-elongata_contig4950.12139.1 vs. uniprot
Match: A0A5J4Y974_9CHLO (Gibberellin 2-beta-dioxygenase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y974_9CHLO)

HSP 1 Score: 92.8 bits (229), Expect = 1.930e-20
Identity = 38/67 (56.72%), Postives = 54/67 (80.60%), Query Frame = 1
Query:    1 TNGHLRSTIHRVVNKLGRERYSIPFFYSPSFDTKVECLPQFCSEDDPAKYPPTTSGKYLMEKLSGLY 201
            TNG+ RST+HRVVN +G+ERYS  FFY P+F  +V CLPQ C +D+PAK+PPTTSG+++++K +  +
Sbjct:  227 TNGYFRSTLHRVVNNVGKERYSTAFFYDPNFTARVACLPQ-CCKDEPAKFPPTTSGQHVLDKYAATH 292          
BLAST of mRNA_H-elongata_contig4950.12139.1 vs. uniprot
Match: A0A8J9RD93_9CHLO (2-oxoglutarate-Fe(II) type oxidoreductase hxnY n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RD93_9CHLO)

HSP 1 Score: 93.2 bits (230), Expect = 2.050e-20
Identity = 39/68 (57.35%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    1 TNGHLRSTIHRVVNKLGRERYSIPFFYSPSFDTKVECLPQFCSEDDPAKYPPTTSGKYLMEKLSGLYS 204
            TNG  +ST+HRV+    R RYSIPFF+ P FDT+VECLP  CS D+P +YPPTTSG++L++K +  +S
Sbjct:  240 TNGLFKSTLHRVITDGSRHRYSIPFFFEPDFDTRVECLPCCCSPDNPPRYPPTTSGQHLLDKYAQTHS 307          
BLAST of mRNA_H-elongata_contig4950.12139.1 vs. uniprot
Match: I0Z511_COCSC (Oxygenase-like protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z511_COCSC)

HSP 1 Score: 92.0 bits (227), Expect = 4.670e-20
Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 TNGHLRSTIHRVVNKLGRERYSIPFFYSPSFDTKVECLPQFCSEDDPAKYPPTTSGKYLMEKLSGLYS*AIRNQKFSS 234
            TNG  +ST+HRVV    R RYSIPFF+ P+FDT+VECLP  C  D+P +YPPTTSG++L++K +  ++      K SS
Sbjct:  233 TNGLFKSTLHRVVTDGSRHRYSIPFFFEPNFDTRVECLPCCCGPDNPPRYPPTTSGQHLLDKYAQTHAGFDATSKTSS 310          
BLAST of mRNA_H-elongata_contig4950.12139.1 vs. uniprot
Match: A0A225W8H1_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W8H1_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 6.270e-20
Identity = 38/61 (62.30%), Postives = 50/61 (81.97%), Query Frame = 1
Query:    1 TNGHLRSTIHRVVNKLGRERYSIPFFYSPSFDTKVECLPQFCSEDDPAKYPPTTSGKYLME 183
            TNG  +ST+HRVVN  G+ERYS+PFFY P+F  +VEC P   SE++PAKYPPTTSG++L++
Sbjct:  238 TNGMFKSTLHRVVNVSGKERYSVPFFYEPNFTCQVECFPSCVSEENPAKYPPTTSGQHLVD 298          
BLAST of mRNA_H-elongata_contig4950.12139.1 vs. uniprot
Match: A0A7R9YQ36_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9YQ36_9CHLO)

HSP 1 Score: 91.3 bits (225), Expect = 8.530e-20
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 1
Query:    1 TNGHLRSTIHRVVNKLGRERYSIPFFYSPSFDTKVECLPQFCSEDDPAKYPPTTSGKYLMEKLSGLY 201
            TNG   ST+HRVVN  G+ERYSI FF+ P+F+  VECLPQ C  D P KYPPTT+G++L++K +  +
Sbjct:  241 TNGMFHSTLHRVVNTTGQERYSIAFFFEPNFEAIVECLPQCCGPDRPPKYPPTTAGQHLLDKYAATH 307          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4950.12139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9W6_9PHAE7.740e-2562.67Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
D7FYW9_ECTSI7.860e-2559.04Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S4VMP6_9STRA6.080e-2262.90Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6A0A6S1_HAELA4.560e-2153.73Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A5J4Y7A5_9CHLO1.080e-2059.70Hyoscyamine 6-isoform 1 n=1 Tax=Trebouxia sp. A1-2... [more]
A0A5J4Y974_9CHLO1.930e-2056.72Gibberellin 2-beta-dioxygenase n=1 Tax=Trebouxia s... [more]
A0A8J9RD93_9CHLO2.050e-2057.352-oxoglutarate-Fe(II) type oxidoreductase hxnY n=1... [more]
I0Z511_COCSC4.670e-2052.56Oxygenase-like protein n=1 Tax=Coccomyxa subellips... [more]
A0A225W8H1_9STRA6.270e-2062.30Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7R9YQ36_9CHLO8.530e-2056.72Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4950contigH-elongata_contig4950:1318..2058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue2.9e-20
Seed eggNOG ortholog2880.D7FYW8
KEGG koko:K06901
KEGG TC2.A.1.40
GOsGO:0007275,GO:0008150,GO:0009653,GO:0009791,GO:0010015,GO:0010101,GO:0010102,GO:0010468,GO:0019222,GO:0022622,GO:0032501,GO:0032502,GO:0048364,GO:0048527,GO:0048528,GO:0048731,GO:0048856,GO:0050789,GO:0060255,GO:0065007,GO:0090696,GO:0090697,GO:0090698,GO:0099402,GO:1905392
EggNOG free text desc.Belongs to the iron ascorbate-dependent oxidoreductase family
EggNOG OGsCOG3491@1,KOG0143@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons2
Model size331
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930814.1948047-CDS-H-elongata_contig4950:1317..14191622930814.1948047-CDS-H-elongata_contig4950:1317..1419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4950 1318..1419 +
1691679581.5701573-CDS-H-elongata_contig4950:1317..14191691679581.5701573-CDS-H-elongata_contig4950:1317..1419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4950 1318..1419 +
1622930814.2214277-CDS-H-elongata_contig4950:1831..19361622930814.2214277-CDS-H-elongata_contig4950:1831..1936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4950 1832..1936 +
1691679581.5818348-CDS-H-elongata_contig4950:1831..19361691679581.5818348-CDS-H-elongata_contig4950:1831..1936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4950 1832..1936 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930814.2368078-UTR-H-elongata_contig4950:1936..20581622930814.2368078-UTR-H-elongata_contig4950:1936..2058Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4950 1937..2058 +
1691679581.5923104-UTR-H-elongata_contig4950:1936..20581691679581.5923104-UTR-H-elongata_contig4950:1936..2058Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4950 1937..2058 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4950.12139.1prot_H-elongata_contig4950.12139.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4950 1318..1936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4950.12139.1

>prot_H-elongata_contig4950.12139.1 ID=prot_H-elongata_contig4950.12139.1|Name=mRNA_H-elongata_contig4950.12139.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
TNGHLRSTIHRVVNKLGRERYSIPFFYSPSFDTKVECLPQFCSEDDPAKY
PPTTSGKYLMEKLSGLYS*
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mRNA from alignment at H-elongata_contig4950:1318..2058+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4950.12139.1 ID=mRNA_H-elongata_contig4950.12139.1|Name=mRNA_H-elongata_contig4950.12139.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=741bp|location=Sequence derived from alignment at H-elongata_contig4950:1318..2058+ (Himanthalia elongata Himel1 dioecious)
ACAAATGGCCACCTGCGGTCGACGATCCACCGAGTCGTGAACAAGCTGGG GCGCGAGCGTTACAGTATTCCCTTCTTCTATTCGCCTAGCTTCGATACAA AGGTTCAGTTCAACTGAAATAAACCCATTACAAAAGTTGTATTTGTTATT GTTCATTGTCACAATGGTAGGCGTTCACAACGACGGGATTTCAATACAAC CGACACTTGTAGCGAAATGTGAACACGTGTCGTAATCAGGTAAAACATTA ACGCTTTGACCAGCTTTACTGTGAACACCACCCATGTATGAGATACTAGT GGGCTACCGGAGCTGAGTTACTTTTTGACAAAGTGCTCTCGGTGGCGATA TACGAGGGAACAATACCGCACCCAAGAATATTAACTATCGTGAAACGACT CATCATTTTGATTGTTGGGGATATTACCGTGCTTCTTCAAGTCGTGCTTG GCATTCAACAACATTCCTATACATGCTGCATCTCTACGTTTTGCTCTATT TTCATGACCATCAGGTTGAGTGCCTGCCGCAGTTTTGCTCAGAAGACGAT CCGGCCAAGTACCCGCCCACGACAAGCGGAAAATACCTCATGGAGAAGTT GTCGGGGCTGTACTCGTAGGCGATAAGGAACCAGAAGTTCTCTAGCGAGG GGAAGACTAGCGTAACTAGCGAAAGAGGTTTCGTGTGGCCTGAATTATTT GTATTTATGTACGTTCTGGTCAAATTCAATCGAAAAGCAGC
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Coding sequence (CDS) from alignment at H-elongata_contig4950:1318..2058+

>mRNA_H-elongata_contig4950.12139.1 ID=mRNA_H-elongata_contig4950.12139.1|Name=mRNA_H-elongata_contig4950.12139.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig4950:1318..2058+ (Himanthalia elongata Himel1 dioecious)
ACAAATGGCCACCTGCGGTCGACGATCCACCGAGTCGTGAACAAGCTGGG
GCGCGAGCGTTACAGTATTCCCTTCTTCTATTCGCCTAGCTTCGATACAA
AGACAAATGGCCACCTGCGGTCGACGATCCACCGAGTCGTGAACAAGCTG
GGGCGCGAGCGTTACAGTATTCCCTTCTTCTATTCGCCTAGCTTCGATAC
AAAGGTTGAGTGCCTGCCGCAGTTTTGCTCAGAAGACGATCCGGCCAAGT
ACCCGCCCACGACAAGCGGAAAATACCTCATGGAGAAGTTGTCGGGGCTG
TACTCGTAGGTTGAGTGCCTGCCGCAGTTTTGCTCAGAAGACGATCCGGC
CAAGTACCCGCCCACGACAAGCGGAAAATACCTCATGGAGAAGTTGTCGG
GGCTGTACTCGTAG
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