mRNA_H-elongata_contig49399.12129.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49399.12129.1
Unique NamemRNA_H-elongata_contig49399.12129.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig49399.12129.1 vs. uniprot
Match: D7FMA3_ECTSI (PHD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMA3_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 3.070e-33
Identity = 85/157 (54.14%), Postives = 96/157 (61.15%), Query Frame = 1 
Query:    1 EWTACLGHASIAAAVAVAEKSFIAWKALASDALVKQRRAAQFVRGARAKGGGREGGHGARNRCEEAARELAECCEEEGFMKYMLARDAWTGFEGASTSSAGTPERAAXXXXXXXXXTGDVP----IPAGLEASGRRELMESSLVLLWRARHLRDTGG 459
            EW ACLGHASIAAAV  AEK+F AWKALA +AL K RR A    G               + CE AAR+LAECCEEE FMK+MLARD W G E AST++A     AA         T        +PAGLEA GRR L+ESSL LL RA+ LR+TGG
Sbjct: 2462 EWAACLGHASIAAAVGAAEKAFSAWKALAEEALAKARREALRGGGKXXXXXXXXXXXXGLDACETAARDLAECCEEEAFMKFMLARDVWPGAEPASTATASAAGGAASVTAAGPAPTAATAPAARVPAGLEAGGRRRLLESSLSLLQRAQRLRETGG 2618
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BLAST of mRNA_H-elongata_contig49399.12129.1 vs. uniprot
Match: A0A6H5KF24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF24_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 2.990e-29
Identity = 94/179 (52.51%), Postives = 105/179 (58.66%), Query Frame = 1 
Query:    1 EWTACLGHASIAAAVAVAEKSFIAWKALASDALVKQRRAAQFVRGARAKGGGREGGHGAR-----------NRCEEAARELAECCEEEGFMKYMLARDAWTGFEGASTSSAGTPERAAXXXXXXXXXTGDVP---------------IPAGLEASGRRELMESSLVLLWRARHLRDTGG 459
            EW ACLGHASIAAAV  AEK F AWKALA +AL K RR  +  RG         GG G             + CE AAR+LAECCEEE FMK+MLARD W G E AST++A       XXXXXXXXX                    +PAGLEA GRR L+ESSL LL RA+ LR+TGG
Sbjct:  886 EWAACLGHASIAAAVGAAEKGFSAWKALAEEALAKARR--EVFRG---------GGKGXXXXXXXXXXXXVDACETAARDLAECCEEEAFMKFMLARDVWPGAELASTTTASAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAARVPAGLEAGGRRRLLESSLTLLQRAQRLRETGG 1053
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49399.12129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMA3_ECTSI3.070e-3354.14PHD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KF24_9PHAE2.990e-2952.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49399contigH-elongata_contig49399:267..1494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size731
Cds size729
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930812.2149005-CDS-H-elongata_contig49399:266..4911622930812.2149005-CDS-H-elongata_contig49399:266..491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49399 267..491 +
1691679580.968787-CDS-H-elongata_contig49399:266..4911691679580.968787-CDS-H-elongata_contig49399:266..491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49399 267..491 +
1622930812.2332277-CDS-H-elongata_contig49399:990..14941622930812.2332277-CDS-H-elongata_contig49399:990..1494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49399 991..1494 +
1691679580.977149-CDS-H-elongata_contig49399:990..14941691679580.977149-CDS-H-elongata_contig49399:990..1494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49399 991..1494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49399.12129.1prot_H-elongata_contig49399.12129.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49399 267..1494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49399.12129.1

>prot_H-elongata_contig49399.12129.1 ID=prot_H-elongata_contig49399.12129.1|Name=mRNA_H-elongata_contig49399.12129.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=243bp
EWTACLGHASIAAAVAVAEKSFIAWKALASDALVKQRRAAQFVRGARAKG
GGREGGHGARNRCEEAARELAECCEEEGFMKYMLARDAWTGFEGASTSSA
GTPERAAAETTTTTTTTGDVPIPAGLEASGRRELMESSLVLLWRARHLRD
TGGTMGLAYSTRACRRERLHRRRRRRSGCSPSSPKELSRGVGRVPRKTGS
DAAAGSAGGGGGDDEEKDRWESSSSSGRSPKRHKLWITGSGGG
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mRNA from alignment at H-elongata_contig49399:267..1494+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49399.12129.1 ID=mRNA_H-elongata_contig49399.12129.1|Name=mRNA_H-elongata_contig49399.12129.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1228bp|location=Sequence derived from alignment at H-elongata_contig49399:267..1494+ (Himanthalia elongata Himel1 dioecious)
GAGTGGACTGCTTGTCTCGGCCACGCTTCCATCGCCGCAGCCGTCGCCGT
GGCGGAAAAGAGTTTCATCGCTTGGAAGGCGTTAGCCTCGGACGCCCTGG
TAAAACAACGACGAGCGGCACAGTTCGTCCGAGGCGCCAGGGCGAAGGGG
GGAGGACGAGAGGGTGGTCACGGGGCTCGCAACCGATGCGAAGAGGCAGC
CAGGGAACTGGCAGAGTGCTGCGAGGCGAGTAGCTTATCGCCTGCAGCGG
AACGAACGCGCGGGTGTAAACTCTATTATATGTTTAAAAAAAAATCGGGG
TGTTGCTTGCGACGAGGAGGAGGATGGAAAGGACATTCCTACTGCTACCG
GGTTTCCGTTCAATCCCACCTTTTTCCCTCCTTCTCTTGCCCTCGTAAGC
ACCTAACGCGTTCGGCTCTATTACATCAAATTATTCGAAGCCTCCTTCAC
AGTAGCTTCCCGAGTCCTGCCGCGTATGTAACCACCTTTTGTCATCAAGG
GTGAGCGCGACCTCGAGCGGACCGGAGCACGCGCTTGCGGGGGGGCGTCT
AATTGTTTAGGTCCCTCCACGTGCTCTTATCCATTTTCTCGGGCGCGCAC
GTGGCGACTACGCTGCAGCGGCTCCAATCCTCGTTTCGCGTAGACCTCGC
TCACTCTACCCCCTCACCCCCGCATAAATCATGCACACATTCGCACTACA
ACTCCCACTCCCACACCCACACAGGAAGAGGGCTTCATGAAGTATATGCT
CGCCCGCGACGCATGGACGGGCTTCGAAGGTGCTTCGACCTCCTCGGCGG
GCACCCCCGAGCGTGCCGCTGCCGAGACGACAACGACCACAACAACAACC
GGCGACGTCCCGATCCCCGCGGGGCTCGAAGCTTCCGGGCGGCGAGAGCT
GATGGAATCTTCTCTGGTTCTTCTGTGGAGAGCGCGACACCTCAGGGACA
CGGGTGGCACGATGGGTCTCGCCTACTCTACCCGCGCTTGTCGCCGCGAA
CGCCTCCATCGCCGCCGCCGCCGCCGATCTGGCTGCTCTCCATCGTCTCC
AAAGGAACTATCGCGCGGGGTGGGGCGGGTACCGCGGAAGACAGGAAGTG
ATGCTGCCGCGGGGTCTGCCGGAGGTGGAGGCGGTGATGACGAGGAGAAG
GATCGGTGGGAATCATCGTCGTCGTCGGGAAGGTCCCCCAAGAGGCACAA
GCTTTGGATTACGGGCTCGGGTGGGGGC
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Coding sequence (CDS) from alignment at H-elongata_contig49399:267..1494+

>mRNA_H-elongata_contig49399.12129.1 ID=mRNA_H-elongata_contig49399.12129.1|Name=mRNA_H-elongata_contig49399.12129.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1458bp|location=Sequence derived from alignment at H-elongata_contig49399:267..1494+ (Himanthalia elongata Himel1 dioecious)
GAGTGGACTGCTTGTCTCGGCCACGCTTCCATCGCCGCAGCCGTCGCCGT
GGCGGAAAAGAGTTTCATCGCTTGGAAGGCGTTAGCCTCGGACGCCCTGG
TAAAACAACGACGAGCGGCACAGTTCGTCCGAGGCGCCAGGGCGAAGGGG
GGAGGACGAGAGGGTGGTCACGGGGCTCGCAACCGATGCGAAGAGGCAGC
CAGGGAACTGGCAGAGTGCTGCGAGGAGTGGACTGCTTGTCTCGGCCACG
CTTCCATCGCCGCAGCCGTCGCCGTGGCGGAAAAGAGTTTCATCGCTTGG
AAGGCGTTAGCCTCGGACGCCCTGGTAAAACAACGACGAGCGGCACAGTT
CGTCCGAGGCGCCAGGGCGAAGGGGGGAGGACGAGAGGGTGGTCACGGGG
CTCGCAACCGATGCGAAGAGGCAGCCAGGGAACTGGCAGAGTGCTGCGAG
GAAGAGGGCTTCATGAAGTATATGCTCGCCCGCGACGCATGGACGGGCTT
CGAAGGTGCTTCGACCTCCTCGGCGGGCACCCCCGAGCGTGCCGCTGCCG
AGACGACAACGACCACAACAACAACCGGCGACGTCCCGATCCCCGCGGGG
CTCGAAGCTTCCGGGCGGCGAGAGCTGATGGAATCTTCTCTGGTTCTTCT
GTGGAGAGCGCGACACCTCAGGGACACGGGTGGCACGATGGGTCTCGCCT
ACTCTACCCGCGCTTGTCGCCGCGAACGCCTCCATCGCCGCCGCCGCCGC
CGATCTGGCTGCTCTCCATCGTCTCCAAAGGAACTATCGCGCGGGGTGGG
GCGGGTACCGCGGAAGACAGGAAGTGATGCTGCCGCGGGGTCTGCCGGAG
GTGGAGGCGGTGATGACGAGGAGAAGGATCGGTGGGAATCATCGTCGTCG
TCGGGAAGGTCCCCCAAGAGGCACAAGCTTTGGATTACGGGCTCGGGTGG
GGGCGAAGAGGGCTTCATGAAGTATATGCTCGCCCGCGACGCATGGACGG
GCTTCGAAGGTGCTTCGACCTCCTCGGCGGGCACCCCCGAGCGTGCCGCT
GCCGAGACGACAACGACCACAACAACAACCGGCGACGTCCCGATCCCCGC
GGGGCTCGAAGCTTCCGGGCGGCGAGAGCTGATGGAATCTTCTCTGGTTC
TTCTGTGGAGAGCGCGACACCTCAGGGACACGGGTGGCACGATGGGTCTC
GCCTACTCTACCCGCGCTTGTCGCCGCGAACGCCTCCATCGCCGCCGCCG
CCGCCGATCTGGCTGCTCTCCATCGTCTCCAAAGGAACTATCGCGCGGGG
TGGGGCGGGTACCGCGGAAGACAGGAAGTGATGCTGCCGCGGGGTCTGCC
GGAGGTGGAGGCGGTGATGACGAGGAGAAGGATCGGTGGGAATCATCGTC
GTCGTCGGGAAGGTCCCCCAAGAGGCACAAGCTTTGGATTACGGGCTCGG
GTGGGGGC
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