mRNA_H-elongata_contig49263.12110.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig49263.12110.1 vs. uniprot
Match: A0A6H5K541_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K541_9PHAE) HSP 1 Score: 182 bits (463), Expect = 9.190e-54 Identity = 101/235 (42.98%), Postives = 141/235 (60.00%), Query Frame = 1
Query: 1 LREFRANLPVPGARAVSFIDYITVILPPELSLDMAAIGKVTEWLQERLRVEDISLNRRKLQALLAYGFGPEQLTEEQRVTMDTTGLTVARQGMRVVGVPVGTEQFQRDLLQKAVNGEPAELVRALVPMEDVQSSFQILRLSATSRLSYLLRTVPPSITCQAAANYDALVEWTLASIVAGDGATAIGLPTPQE----------------ALRQTHLPIREGGLGLPSSSSIRGAAY 657
++EF PVPGA+ + ++D + V LPP L+ ++ AI VT W+Q+ L + I L+ K + L GF LT +++ + TGL+VA GM +VGVPVGTE FQR + G PAEL+R L ++D Q+S+Q+LRLS RL +LLRT+ PSIT AA +D L+ W ++ IV G A +G+PT +E A Q HLPIREGGLG+ SS IR +A+
Sbjct: 34 MKEFNDKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSKVLFPEGFFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNTAAREHDNLMIWAVSKIVLGKMANTVGIPTVEEVRANPEKSEVDFFKDSARAQVHLPIREGGLGITSSVLIRESAF 268
BLAST of mRNA_H-elongata_contig49263.12110.1 vs. uniprot
Match: A0A6H5JLD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD7_9PHAE) HSP 1 Score: 175 bits (444), Expect = 1.210e-50 Identity = 95/236 (40.25%), Postives = 140/236 (59.32%), Query Frame = 1
Query: 1 LREFRANLPVPGARAVSFIDYITVILPPELSLDMAAIGKVTEWLQERLRVEDISLNRRKLQALLAYGFGPEQLTEEQRVTMDTTGLTVARQGMRVVGVPVGTEQFQRDLLQKAVNGEPAELVRALVPMEDVQSSFQILRLSATSRLSYLLRTVPPSITCQAAANYDALVEWTLASIVAGDGATAIGLPTPQE-----------------ALRQTHLPIREGGLGLPSSSSIRGAAY 657
++EF PVPG + + ++D + LPP L+ +M AI VT W+QERL + I L+ K + L G LT +++ + GL+VA GM VVG+P GTE+FQR+ + K G+PAEL+ L ++D Q+S+Q+LRLS RL +LLRT+ PSIT AA +D ++ W ++ IV G A ++ +PT +E A Q HLP+REGGLG+ S+ IR +A+
Sbjct: 1 MKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPAGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAF 236
BLAST of mRNA_H-elongata_contig49263.12110.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE) HSP 1 Score: 180 bits (457), Expect = 9.620e-50 Identity = 100/235 (42.55%), Postives = 140/235 (59.57%), Query Frame = 1
Query: 1 LREFRANLPVPGARAVSFIDYITVILPPELSLDMAAIGKVTEWLQERLRVEDISLNRRKLQALLAYGFGPEQLTEEQRVTMDTTGLTVARQGMRVVGVPVGTEQFQRDLLQKAVNGEPAELVRALVPMEDVQSSFQILRLSATSRLSYLLRTVPPSITCQAAANYDALVEWTLASIVAGDGATAIGLPTPQE----------------ALRQTHLPIREGGLGLPSSSSIRGAAY 657
++EF PVPGA+ + ++D + V LPP L+ ++ AI VT W+Q+ L + I L+ K + L G LT +++ + TGL+VA GM +VGVPVGTE FQR + G PAEL+R L ++D Q+S+Q+LRLS RL +LLRT+ PSIT AA +D L+ W ++ IV G A +G+PT +E A Q HLPIREGGLG+ SS IR +A+
Sbjct: 335 MKEFNNKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSKVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNTAAREHDNLMIWAVSKIVLGKMANTVGIPTVEEVRANPEKSEVDFFKDSARAQVHLPIREGGLGITSSVLIRESAF 569
BLAST of mRNA_H-elongata_contig49263.12110.1 vs. uniprot
Match: A0A6H5JL76_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL76_9PHAE) HSP 1 Score: 173 bits (438), Expect = 1.250e-49 Identity = 98/235 (41.70%), Postives = 137/235 (58.30%), Query Frame = 1
Query: 1 LREFRANLPVPGARAVSFIDYITVILPPELSLDMAAIGKVTEWLQERLRVEDISLNRRKLQALLAYGFGPEQLTEEQRVTMDTTGLTVARQGMRVVGVPVGTEQFQRDLLQKAVNGEPAELVRALVPMEDVQSSFQILRLSATSRLSYLLRTVPPSITCQAAANYDALVEWTLASIVAGDGATAIGLPTPQE----------------ALRQTHLPIREGGLGLPSSSSIRGAAY 657
++EF PVPGA+ + ++D + V LPP L+ ++ AI VT W+Q+ L + I L+ K + L G LT +++ + TGL+VA GM +VGVPVGTE FQR + G PAEL+R L ++D Q+S+Q+LRLS RL +LLRT PSIT AA +D L+ W ++ IV G A +G+PT +E A Q HLPIREGGL + S IR +A+
Sbjct: 1 MKEFNDKPPVPGAKLIRYVDDLHVHLPPGLARNIQAIATVTNWIQDHLLRKVIELSLPKSKVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTTAPSITSTAAREHDNLMIWAVSKIVLGKMANTVGIPTVEEVRANPEKSEVDFFKDSARAQVHLPIREGGLRITCSVLIRESAF 235
BLAST of mRNA_H-elongata_contig49263.12110.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE) HSP 1 Score: 176 bits (447), Expect = 3.890e-49 Identity = 98/235 (41.70%), Postives = 139/235 (59.15%), Query Frame = 1
Query: 1 LREFRANLPVPGARAVSFIDYITVILPPELSLDMAAIGKVTEWLQERLRVEDISLNRRKLQALLAYGFGPEQLTEEQRVTMDTTGLTVARQGMRVVGVPVGTEQFQRDLLQKAVNGEPAELVRALVPMEDVQSSFQILRLSATSRLSYLLRTVPPSITCQAAANYDALVEWTLASIVAGDGATAIGLPTPQE----------------ALRQTHLPIREGGLGLPSSSSIRGAAY 657
++EF PVPGA+ + ++D + V LPP L+ ++ AI VT W+Q+ L + I L+ K L G LT +++ + TGL+VA GM +VGVPVGTE FQR + G PAEL+ L ++D Q+S+Q+LR+S RL +LLRT+ PSIT AA +D+L+ W ++ IV G A +G+PT +E A Q HLPIREGGLG+ SS IR +A+
Sbjct: 183 MKEFNNKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSNVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGIPAELIPRLSTLDDPQTSYQLLRMSGVPRLFHLLRTIAPSITNTAAREHDSLMIWAVSKIVLGKMANTVGIPTVEEVPANPEKSEVDFFKDSARAQVHLPIREGGLGITSSVLIRESAF 417
BLAST of mRNA_H-elongata_contig49263.12110.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE) HSP 1 Score: 177 bits (448), Expect = 1.970e-47 Identity = 96/236 (40.68%), Postives = 141/236 (59.75%), Query Frame = 1
Query: 1 LREFRANLPVPGARAVSFIDYITVILPPELSLDMAAIGKVTEWLQERLRVEDISLNRRKLQALLAYGFGPEQLTEEQRVTMDTTGLTVARQGMRVVGVPVGTEQFQRDLLQKAVNGEPAELVRALVPMEDVQSSFQILRLSATSRLSYLLRTVPPSITCQAAANYDALVEWTLASIVAGDGATAIGLPTPQE-----------------ALRQTHLPIREGGLGLPSSSSIRGAAY 657
++EF PVPG + + ++D + LPP L+ +M AI VT W+QERL + I L+ K + L G LT +++ + GL+VA GM VVG+PVGTE+FQR+ + K G+PAEL+ L ++D Q+S+Q+LRLS RL +LLRT+ PSIT AA +D ++ W ++ IV G A ++ +PT +E A Q HLP+REGGLG+ S+ IR +A+
Sbjct: 335 MKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAF 570
BLAST of mRNA_H-elongata_contig49263.12110.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE) HSP 1 Score: 177 bits (448), Expect = 2.020e-47 Identity = 96/236 (40.68%), Postives = 141/236 (59.75%), Query Frame = 1
Query: 1 LREFRANLPVPGARAVSFIDYITVILPPELSLDMAAIGKVTEWLQERLRVEDISLNRRKLQALLAYGFGPEQLTEEQRVTMDTTGLTVARQGMRVVGVPVGTEQFQRDLLQKAVNGEPAELVRALVPMEDVQSSFQILRLSATSRLSYLLRTVPPSITCQAAANYDALVEWTLASIVAGDGATAIGLPTPQE-----------------ALRQTHLPIREGGLGLPSSSSIRGAAY 657
++EF PVPG + + ++D + LPP L+ +M AI VT W+QERL + I L+ K + L G LT +++ + GL+VA GM VVG+PVGTE+FQR+ + K G+PAEL+ L ++D Q+S+Q+LRLS RL +LLRT+ PSIT AA +D ++ W ++ IV G A ++ +PT +E A Q HLP+REGGLG+ S+ IR +A+
Sbjct: 183 MKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAF 418
BLAST of mRNA_H-elongata_contig49263.12110.1 vs. uniprot
Match: A0A6H5KKJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ7_9PHAE) HSP 1 Score: 176 bits (445), Expect = 3.360e-47 Identity = 96/236 (40.68%), Postives = 140/236 (59.32%), Query Frame = 1
Query: 1 LREFRANLPVPGARAVSFIDYITVILPPELSLDMAAIGKVTEWLQERLRVEDISLNRRKLQALLAYGFGPEQLTEEQRVTMDTTGLTVARQGMRVVGVPVGTEQFQRDLLQKAVNGEPAELVRALVPMEDVQSSFQILRLSATSRLSYLLRTVPPSITCQAAANYDALVEWTLASIVAGDGATAIGLPTPQE-----------------ALRQTHLPIREGGLGLPSSSSIRGAAY 657
++EF PVPG + + ++D + LPP L+ +M AI VT W+QERL + I L+ K + L G LT +++ + GL+VA GM VVG+PVGTE+FQR+ + K G+PAEL+ L ++D Q+S+Q+LRLS RL LLRT+ PSIT AA +D ++ W ++ IV G A ++ +PT +E A Q HLP+REGGLG+ S+ IR +A+
Sbjct: 1 MKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFQLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAF 236
BLAST of mRNA_H-elongata_contig49263.12110.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE) HSP 1 Score: 175 bits (444), Expect = 4.520e-47 Identity = 95/236 (40.25%), Postives = 140/236 (59.32%), Query Frame = 1
Query: 1 LREFRANLPVPGARAVSFIDYITVILPPELSLDMAAIGKVTEWLQERLRVEDISLNRRKLQALLAYGFGPEQLTEEQRVTMDTTGLTVARQGMRVVGVPVGTEQFQRDLLQKAVNGEPAELVRALVPMEDVQSSFQILRLSATSRLSYLLRTVPPSITCQAAANYDALVEWTLASIVAGDGATAIGLPTPQE-----------------ALRQTHLPIREGGLGLPSSSSIRGAAY 657
++EF PVPG + + ++D + LPP L+ +M AI VT W+QERL + I L+ K + L G LT +++ + GL+V GM VVG+PVGTE+FQR+ + K G+PAEL+ L ++D Q+S+Q+LRLS RL +LLRT+ PSIT AA +D ++ W ++ IV G A ++ +PT +E A Q HLP+REGGLG+ S+ IR +A+
Sbjct: 335 MKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVTEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAF 570
BLAST of mRNA_H-elongata_contig49263.12110.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN) HSP 1 Score: 163 bits (412), Expect = 1.450e-42 Identity = 93/234 (39.74%), Postives = 139/234 (59.40%), Query Frame = 1
Query: 1 LREFRANLPVPGARAVSFIDYITVILPPELSLDMAAIGKVTEWLQERLRVEDISLNRRKLQALLAYGFGPEQLTEEQRVTMDTTGLTVARQGMRVVGVPVGTEQFQRDLLQKAVNGEPAELVRALVPMEDVQSSFQILRLSATSRLSYLLRTVPPSITCQAAANYDALVEWTLASIVAGD---GATAIGLPTPQEA------------LRQTHLPIREGGLGLPSSSSIRGAAY 657
LR+FRAN PV GA+ ++FID + V+LP + + AA VT W+Q ++ ++LNR K + L G + E+ R T++ T L VA GMR+VGVPVG + + GEP +L++ + ++D Q+S QILR SA +RL++LLR++PP +T +AA+ +D VE TL +I+ G G A PT + + +RQ LP+REGGLG+PS+ I G A+
Sbjct: 1370 LRDFRANPPVVGAQLMAFIDDLVVLLPKNHACNPAAAEAVTTWIQANMQPLGVALNRSKSKILFPPGTDVKSWPEKDRETLERTQLAVAEGGMRIVGVPVGEPDYIKRSALDIARGEPTDLLKEIASLDDAQASLQILRFSAATRLNFLLRSLPPDLTKEAASEFDKSVEQTLETILNGPSQPGEHAPHEPTEENSPSLPRLNLSPVGIRQARLPVREGGLGIPSTVDISGPAF 1603 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49263.12110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig49263.12110.1 >prot_H-elongata_contig49263.12110.1 ID=prot_H-elongata_contig49263.12110.1|Name=mRNA_H-elongata_contig49263.12110.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=219bp LREFRANLPVPGARAVSFIDYITVILPPELSLDMAAIGKVTEWLQERLRVback to top mRNA from alignment at H-elongata_contig49263:1579..2286- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig49263.12110.1 ID=mRNA_H-elongata_contig49263.12110.1|Name=mRNA_H-elongata_contig49263.12110.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=708bp|location=Sequence derived from alignment at H-elongata_contig49263:1579..2286- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig49263:1579..2286- >mRNA_H-elongata_contig49263.12110.1 ID=mRNA_H-elongata_contig49263.12110.1|Name=mRNA_H-elongata_contig49263.12110.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1314bp|location=Sequence derived from alignment at H-elongata_contig49263:1579..2286- (Himanthalia elongata Himel1 dioecious)back to top |