mRNA_H-elongata_contig49174.12100.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig49174.12100.1 vs. uniprot
Match: D7FLX8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLX8_ECTSI) HSP 1 Score: 113 bits (283), Expect = 1.420e-28 Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 1
Query: 1 QVVENFDSMGLKDELLRGVYAYGFERPSAVQQRAVKPIMSGRDVIAQSQSGTGKTAVFS 177
+VVENFDSMGLKDELLRGVYAYGFERPSAVQQRAVKPI SGRDVIAQSQSGTGKTAVFS
Sbjct: 26 EVVENFDSMGLKDELLRGVYAYGFERPSAVQQRAVKPITSGRDVIAQSQSGTGKTAVFS 84
BLAST of mRNA_H-elongata_contig49174.12100.1 vs. uniprot
Match: R1DVI5_EMIHU (Q_MOTIF domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DVI5_EMIHU) HSP 1 Score: 101 bits (252), Expect = 6.890e-27 Identity = 45/59 (76.27%), Postives = 55/59 (93.22%), Query Frame = 1
Query: 1 QVVENFDSMGLKDELLRGVYAYGFERPSAVQQRAVKPIMSGRDVIAQSQSGTGKTAVFS 177
Q+VE+FD+MGLKDELLRG+YAYGFE+PSA+QQRA+ PI+ GRD IAQ+QSGTGKT +FS
Sbjct: 16 QIVESFDAMGLKDELLRGIYAYGFEKPSAIQQRAIMPILKGRDTIAQAQSGTGKTTIFS 74
BLAST of mRNA_H-elongata_contig49174.12100.1 vs. uniprot
Match: A0A7R9AFM3_9CRUS (RNA helicase (Fragment) n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R9AFM3_9CRUS) HSP 1 Score: 100 bits (248), Expect = 2.060e-25 Identity = 44/59 (74.58%), Postives = 55/59 (93.22%), Query Frame = 1
Query: 1 QVVENFDSMGLKDELLRGVYAYGFERPSAVQQRAVKPIMSGRDVIAQSQSGTGKTAVFS 177
+V+ FDSMGL+++LLRG+YAYGFERPSA+QQR++KP+M GRDVIAQ+QSGTGKTA FS
Sbjct: 26 EVIPTFDSMGLREDLLRGIYAYGFERPSAIQQRSIKPVMKGRDVIAQAQSGTGKTATFS 84
BLAST of mRNA_H-elongata_contig49174.12100.1 vs. uniprot
Match: A0A7S2WT78_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WT78_9STRA) HSP 1 Score: 102 bits (255), Expect = 5.680e-25 Identity = 48/59 (81.36%), Postives = 55/59 (93.22%), Query Frame = 1
Query: 1 QVVENFDSMGLKDELLRGVYAYGFERPSAVQQRAVKPIMSGRDVIAQSQSGTGKTAVFS 177
+VV FD MGL++ELLRG+YAYGFERPSA+QQRA+KPI+ GRDVIAQSQSGTGKTAVFS
Sbjct: 87 EVVHTFDEMGLREELLRGIYAYGFERPSAIQQRAIKPIIMGRDVIAQSQSGTGKTAVFS 145
BLAST of mRNA_H-elongata_contig49174.12100.1 vs. uniprot
Match: UPI001443481E (eukaryotic initiation factor 4A-III isoform X1 n=1 Tax=Megalopta genalis TaxID=115081 RepID=UPI001443481E) HSP 1 Score: 102 bits (253), Expect = 9.240e-25 Identity = 46/59 (77.97%), Postives = 55/59 (93.22%), Query Frame = 1
Query: 1 QVVENFDSMGLKDELLRGVYAYGFERPSAVQQRAVKPIMSGRDVIAQSQSGTGKTAVFS 177
+V+ FD+MGLKDELLRG+YAYGFE+PSA+QQR++KPIM GRDVIAQ+QSGTGKTA FS
Sbjct: 27 EVIPTFDNMGLKDELLRGIYAYGFEKPSAIQQRSIKPIMKGRDVIAQAQSGTGKTATFS 85
BLAST of mRNA_H-elongata_contig49174.12100.1 vs. uniprot
Match: A0A7S0E1J2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E1J2_9EUKA) HSP 1 Score: 98.2 bits (243), Expect = 1.090e-24 Identity = 44/59 (74.58%), Postives = 54/59 (91.53%), Query Frame = 1
Query: 1 QVVENFDSMGLKDELLRGVYAYGFERPSAVQQRAVKPIMSGRDVIAQSQSGTGKTAVFS 177
++V +FDSMGLKDELLRG++AYGFE+PSA+QQRAV PI+ GRD IAQ+QSGTGKT +FS
Sbjct: 22 EIVPSFDSMGLKDELLRGIFAYGFEKPSAIQQRAVMPILKGRDTIAQAQSGTGKTTIFS 80
BLAST of mRNA_H-elongata_contig49174.12100.1 vs. uniprot
Match: A0A7R9CJ77_TIMCR (RNA helicase n=1 Tax=Timema cristinae TaxID=61476 RepID=A0A7R9CJ77_TIMCR) HSP 1 Score: 99.0 bits (245), Expect = 2.340e-24 Identity = 44/59 (74.58%), Postives = 55/59 (93.22%), Query Frame = 1
Query: 1 QVVENFDSMGLKDELLRGVYAYGFERPSAVQQRAVKPIMSGRDVIAQSQSGTGKTAVFS 177
+V+ FDSMGL++ELLRG+YAYGFE+PSA+QQR++KPI+ GRDVIAQ+QSGTGKTA FS
Sbjct: 27 EVIPTFDSMGLREELLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFS 85
BLAST of mRNA_H-elongata_contig49174.12100.1 vs. uniprot
Match: A0A433PKZ4_9FUNG (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433PKZ4_9FUNG) HSP 1 Score: 96.7 bits (239), Expect = 2.650e-24 Identity = 43/59 (72.88%), Postives = 53/59 (89.83%), Query Frame = 1
Query: 1 QVVENFDSMGLKDELLRGVYAYGFERPSAVQQRAVKPIMSGRDVIAQSQSGTGKTAVFS 177
++V+NFD+M L +ELLRG+YAYGFERPSA+QQRA+ P+M G DVIAQ+QSGTGKTA FS
Sbjct: 44 EIVDNFDNMNLNNELLRGIYAYGFERPSAIQQRAILPVMKGHDVIAQAQSGTGKTATFS 102
BLAST of mRNA_H-elongata_contig49174.12100.1 vs. uniprot
Match: A0A210PMW1_MIZYE (RNA helicase n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210PMW1_MIZYE) HSP 1 Score: 98.2 bits (243), Expect = 3.320e-24 Identity = 45/59 (76.27%), Postives = 54/59 (91.53%), Query Frame = 1
Query: 1 QVVENFDSMGLKDELLRGVYAYGFERPSAVQQRAVKPIMSGRDVIAQSQSGTGKTAVFS 177
+V FD+MGL++ELLRGVYAYGFE+PSA+QQRA+KPI+ GRDVIAQ+QSGTGKTA FS
Sbjct: 27 EVTPTFDNMGLREELLRGVYAYGFEKPSAIQQRAIKPIVKGRDVIAQAQSGTGKTATFS 85
BLAST of mRNA_H-elongata_contig49174.12100.1 vs. uniprot
Match: R1BUL9_EMIHU (Uncharacterized protein n=4 Tax=Prymnesiophyceae TaxID=2608131 RepID=R1BUL9_EMIHU) HSP 1 Score: 101 bits (252), Expect = 3.680e-24 Identity = 45/59 (76.27%), Postives = 55/59 (93.22%), Query Frame = 1
Query: 1 QVVENFDSMGLKDELLRGVYAYGFERPSAVQQRAVKPIMSGRDVIAQSQSGTGKTAVFS 177
Q+VE+FD+MGLKDELLRG+YAYGFE+PSA+QQRA+ PI+ GRD IAQ+QSGTGKT +FS
Sbjct: 19 QIVESFDAMGLKDELLRGIYAYGFEKPSAIQQRAIMPILKGRDTIAQAQSGTGKTTIFS 77 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49174.12100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig49174.12100.1 >prot_H-elongata_contig49174.12100.1 ID=prot_H-elongata_contig49174.12100.1|Name=mRNA_H-elongata_contig49174.12100.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp MGLKDELLRGVYAYGFERPSAVQQRAVKPIMSGRDVIAQSQSGTGKTAVFback to top mRNA from alignment at H-elongata_contig49174:357..1292+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig49174.12100.1 ID=mRNA_H-elongata_contig49174.12100.1|Name=mRNA_H-elongata_contig49174.12100.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=936bp|location=Sequence derived from alignment at H-elongata_contig49174:357..1292+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig49174:357..1292+ >mRNA_H-elongata_contig49174.12100.1 ID=mRNA_H-elongata_contig49174.12100.1|Name=mRNA_H-elongata_contig49174.12100.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig49174:357..1292+ (Himanthalia elongata Himel1 dioecious)back to top |