mRNA_H-elongata_contig49107.12092.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig49107.12092.1 vs. uniprot
Match: D8LL78_ECTSI (Serine hydroxymethyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL78_ECTSI) HSP 1 Score: 331 bits (849), Expect = 4.010e-109 Identity = 165/196 (84.18%), Postives = 180/196 (91.84%), Query Frame = 1
Query: 1 TRRAEGLNDLVDFAVFPALQGGPHNHQIAALATALREAARPEFKSYIRRVKANARALAAGLRTMGHEVATGGTDNHLLLWDLRPKGLTGSKMEKVLEACSISANKNTLYGDKSAASPGGVRLGTPAMTTRGLDETDFEKTVAGFLDEAASLACAAQERAGSKKLAAFVAELERDEGVKELKRDVEAFASRFYFPGG 588
+RR EG+NDLVDFAVFPALQGGPHNHQIAALA AL+EAA P+FKSYI++VK NA+ALAAGLR GHEVAT GTDNHLLLWDLRP+GLTGSKMEK+LEACSISANKNTLYGDKSAASPGGVRLGTPAMTTRGLDETDF +TVAGFLD AA LACA QERAGSKKL AFV E++ DEGV+ELK +VEAFA RFY+PGG
Sbjct: 337 SRRNEGINDLVDFAVFPALQGGPHNHQIAALAAALKEAASPDFKSYIKKVKTNAKALAAGLRARGHEVATDGTDNHLLLWDLRPRGLTGSKMEKLLEACSISANKNTLYGDKSAASPGGVRLGTPAMTTRGLDETDFRETVAGFLDRAACLACAVQERAGSKKLTAFVTEMDADEGVRELKGEVEAFAERFYYPGG 532
BLAST of mRNA_H-elongata_contig49107.12092.1 vs. uniprot
Match: A0A7S3F6F0_9EUKA (Glycine hydroxymethyltransferase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F6F0_9EUKA) HSP 1 Score: 216 bits (550), Expect = 1.880e-68 Identity = 118/188 (62.77%), Postives = 137/188 (72.87%), Query Frame = 1
Query: 19 LNDLVDFAVFPALQGGPHNHQIAALATALREAARPEFKSYIRRVKANARALAAGLRTMGHEVATGGTDNHLLLWDLRPKGLTGSKMEKVLEACSISANKNTLYGDKSAASPGGVRLGTPAMTTRGLDETDFEKTVAGFLDEAASLACAAQERAGSKKLAAFVAELERDEGVKELKRDVEAFASRFYFP 582
L D ++ AVFPALQGGPHNHQI ALA ALREAA P FK YI VK NAR LAA L G+ + TGGTDNHL+LWDLRP+ LTGSKMEK+ EA IS NKN + GDKSAA PGGVRLGTPAMTTRGL E+DFE+ VA L +A +A QE +G K LAAF +E D V+ L+ V++F+ FY P
Sbjct: 10 LEDAINNAVFPALQGGPHNHQIGALAVALREAASPSFKEYICAVKGNARTLAAELMRRGYSICTGGTDNHLVLWDLRPQKLTGSKMEKLCEAVHISLNKNAIVGDKSAAVPGGVRLGTPAMTTRGLGESDFEE-VAELLHQAVQIALRLQEASGPK-LAAFAGLMEGDAEVEALRERVQSFSQGFYMP 195
BLAST of mRNA_H-elongata_contig49107.12092.1 vs. uniprot
Match: A0A7S0PCD4_CAFRO (Glycine hydroxymethyltransferase n=2 Tax=Sar TaxID=2698737 RepID=A0A7S0PCD4_CAFRO) HSP 1 Score: 215 bits (547), Expect = 8.470e-68 Identity = 110/192 (57.29%), Postives = 139/192 (72.40%), Query Frame = 1
Query: 10 AEGLNDLVDFAVFPALQGGPHNHQIAALATALREAARPEFKSYIRRVKANARALAAGLRTMGHEVATGGTDNHLLLWDLRPKGLTGSKMEKVLEACSISANKNTLYGDKSAASPGGVRLGTPAMTTRGLDETDFEKTVAGFLDEAASLACAAQERAGSKKLAAFVAELERDEGVKELKRDVEAFASRFYFPG 585
A G ++FAVFP+LQGGPH HQIA +AT L+E EFK+YIR+VKANARA+ L G+ +ATGGTDNHLLLWDLRP+G+TGSK+EK+ +A I+ NKN++YGD+SA SPGGVR+GTPA+TTRG E DF + VA FL + + Q A SK+L FV + DE + L++DV AFASRF PG
Sbjct: 8 ARGFEPKINFAVFPSLQGGPHEHQIAGIATQLKEVMSDEFKAYIRQVKANARAIGEALVEHGYTLATGGTDNHLLLWDLRPQGITGSKIEKLCDAACITVNKNSVYGDRSAMSPGGVRIGTPALTTRGFTEADF-RAVADFLHRSVQIGLRMQAAAPSKRLDDFVKLFDGDEELATLRKDVNAFASRFAMPG 198
BLAST of mRNA_H-elongata_contig49107.12092.1 vs. uniprot
Match: A0A7S0J492_9EUKA (Glycine hydroxymethyltransferase n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J492_9EUKA) HSP 1 Score: 213 bits (543), Expect = 2.070e-66 Identity = 118/184 (64.13%), Postives = 138/184 (75.00%), Query Frame = 1
Query: 31 VDFAVFPALQGGPHNHQIAALATALREAARPEFKSYIRRVKANARALAAGLRTMGHEVATGGTDNHLLLWDLRPKGLTGSKMEKVLEACSISANKNTLYGDKSAASPGGVRLGTPAMTTRGLDETDFEKTVAGFLDEAASLACAAQERAGSKKLAAFVAELERDEGVKELKRDVEAFASRFYFP 582
V+FAVFP LQGGPHN+QIAALA ALREAA PEFK YI VKANA+ALAA L G+ + TGGTDNHL+LWDLRP LTGSK EK+ +A I+ NKN ++GD SAASPGGVRLGTPAM+TRGLDE DFE+ VA FL EA L+ + Q R+G +KL FVAEL V L++ V F+ RF P
Sbjct: 85 VNFAVFPCLQGGPHNNQIAALAVALREAATPEFKQYIAAVKANAQALAAALSARGYRIVTGGTDNHLVLWDLRPLRLTGSKFEKLCDAVGITLNKNAVFGDASAASPGGVRLGTPAMSTRGLDEADFEQ-VAEFLHEAIELSLSVQGRSG-RKLCDFVAELASTPEVALLRQRVRDFSVRFGMP 266
BLAST of mRNA_H-elongata_contig49107.12092.1 vs. uniprot
Match: R1DZ60_EMIHU (Serine hydroxymethyltransferase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DZ60_EMIHU) HSP 1 Score: 218 bits (555), Expect = 1.160e-65 Identity = 116/188 (61.70%), Postives = 141/188 (75.00%), Query Frame = 1
Query: 19 LNDLVDFAVFPALQGGPHNHQIAALATALREAARPEFKSYIRRVKANARALAAGLRTMGHEVATGGTDNHLLLWDLRPKGLTGSKMEKVLEACSISANKNTLYGDKSAASPGGVRLGTPAMTTRGLDETDFEKTVAGFLDEAASLACAAQERAGSKKLAAFVAELERDEGVKELKRDVEAFASRFYFP 582
V+FAVFP LQGGPHNHQIAALA ALREA +P F+ YIRRVKANA+ALAA L G+ + TGGTDNHL+LWDLRP+ LTGSK+EK+ EA I+ NKN + GD SAA+PGGVR+GTPA+TTRG E DF + VA +L EA LA A Q+R+G+K L FVAE+E + V +L+ V AFA+ F P
Sbjct: 296 FESAVNFAVFPCLQGGPHNHQIAALAVALREAQQPAFREYIRRVKANAKALAAALVARGYTIVTGGTDNHLVLWDLRPQRLTGSKLEKLAEAVGITLNKNAVRGDVSAATPGGVRIGTPALTTRGFGEADFVR-VAEYLHEAVELALALQQRSGTK-LKDFVAEMEAEPAVADLRERVRAFATEFPMP 481
BLAST of mRNA_H-elongata_contig49107.12092.1 vs. uniprot
Match: A0A7S2JPG5_9STRA (Glycine hydroxymethyltransferase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JPG5_9STRA) HSP 1 Score: 209 bits (533), Expect = 2.750e-65 Identity = 115/201 (57.21%), Postives = 143/201 (71.14%), Query Frame = 1
Query: 4 RRAEGLNDLVDFAVFPALQGGPHNHQIAALATALREAARPEFKSYIRRVKANARALAAGLRTMGHEVATGGTDNHLLLWDLRPKGLTGSKMEKVLEACSISANKNTLYGDKSAASPGGVRLGTPAMTTRGLDETDFEKTVAGFLDEAASLACAAQERAGSKK------LAAFVAELERDEGVKELKRDVEAFASRFYFPGG 588
R E L+ L+D AVFPALQGGPHN+QIAALA AL+EA EF+ Y V ANA++LA GL GH +AT GTDNHLLLWDLR +G+TGS+MEK LE SI+ANKN+L GD SA +PGGVRLGTPA+T+RG+ +DFEK VA FL A L AQ+ A K + FVA L +G++ L+++VE F+S F+ PGG
Sbjct: 34 RNGEDLSKLIDSAVFPALQGGPHNNQIAALAVALKEAKSEEFRRYATDVIANAQSLAKGLMKRGHMIATDGTDNHLLLWDLRSRGITGSRMEKALEMVSITANKNSLAGDTSAINPGGVRLGTPALTSRGMRASDFEK-VAEFLHRAFELGLEAQQVAAEKSEGKKVMMKDFVAALSEMDGIEILRKEVEDFSSSFFMPGG 233
BLAST of mRNA_H-elongata_contig49107.12092.1 vs. uniprot
Match: D2VIC8_NAEGR (Serine hydroxymethyltransferase n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VIC8_NAEGR) HSP 1 Score: 214 bits (546), Expect = 1.440e-64 Identity = 111/191 (58.12%), Postives = 142/191 (74.35%), Query Frame = 1
Query: 13 EGLNDLVDFAVFPALQGGPHNHQIAALATALREAARPEFKSYIRRVKANARALAAGLRTMGHEVATGGTDNHLLLWDLRPKGLTGSKMEKVLEACSISANKNTLYGDKSAASPGGVRLGTPAMTTRGLDETDFEKTVAGFLDEAASLACAAQERAGSKKLAAFVAELERDEGVKELKRDVEAFASRFYFPG 585
+ L +DFAVFP +QGGPHNHQIAA+AT L+E PEFK YI++VKANA+ LA L G+ +ATGGTDNHL+LW+LRP+G+TGSKMEK+ +A SI++NKN++ GD +A SP GVRLGTPA+TTRG E DFEK VA FL + QE+A S KLA F+A E +E + +LK +VE+FA +F PG
Sbjct: 259 KALMPKIDFAVFPGIQGGPHNHQIAAIATQLKEVKTPEFKQYIQQVKANAKTLAKALIEKGYTLATGGTDNHLVLWNLRPQGITGSKMEKLFDAVSITSNKNSIAGDANALSPFGVRLGTPALTTRGFKEVDFEK-VAEFLHRGVQIGLKLQEQAVSTKLADFLALFENNEELTQLKSEVESFAKQFGIPG 448
BLAST of mRNA_H-elongata_contig49107.12092.1 vs. uniprot
Match: A0A5A8DGJ8_CAFRO (Serine hydroxymethyltransferase n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DGJ8_CAFRO) HSP 1 Score: 215 bits (547), Expect = 1.640e-64 Identity = 110/192 (57.29%), Postives = 139/192 (72.40%), Query Frame = 1
Query: 10 AEGLNDLVDFAVFPALQGGPHNHQIAALATALREAARPEFKSYIRRVKANARALAAGLRTMGHEVATGGTDNHLLLWDLRPKGLTGSKMEKVLEACSISANKNTLYGDKSAASPGGVRLGTPAMTTRGLDETDFEKTVAGFLDEAASLACAAQERAGSKKLAAFVAELERDEGVKELKRDVEAFASRFYFPG 585
A G ++FAVFP+LQGGPH HQIA +AT L+E EFK+YIR+VKANARA+ L G+ +ATGGTDNHLLLWDLRP+G+TGSK+EK+ +A I+ NKN++YGD+SA SPGGVR+GTPA+TTRG E DF + VA FL + + Q A SK+L FV + DE + L++DV AFASRF PG
Sbjct: 276 ARGFEPKINFAVFPSLQGGPHEHQIAGIATQLKEVMSDEFKAYIRQVKANARAIGEALVEHGYTLATGGTDNHLLLWDLRPQGITGSKIEKLCDAACITVNKNSVYGDRSAMSPGGVRIGTPALTTRGFTEADF-RAVADFLHRSVQIGLRMQAAAPSKRLDDFVKLFDGDEELATLRKDVNAFASRFAMPG 466
BLAST of mRNA_H-elongata_contig49107.12092.1 vs. uniprot
Match: A0A7S1NG76_9EUGL (Glycine hydroxymethyltransferase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NG76_9EUGL) HSP 1 Score: 204 bits (520), Expect = 1.320e-63 Identity = 106/190 (55.79%), Postives = 138/190 (72.63%), Query Frame = 1
Query: 16 GLNDLVDFAVFPALQGGPHNHQIAALATALREAARPEFKSYIRRVKANARALAAGLRTMGHEVATGGTDNHLLLWDLRPKGLTGSKMEKVLEACSISANKNTLYGDKSAASPGGVRLGTPAMTTRGLDETDFEKTVAGFLDEAASLACAAQERAGSKKLAAFVAELERDEGVKELKRDVEAFASRFYFPG 585
G + ++FAVFP LQGGPH HQIA +AT L++ A PEFK Y +VKANAR LA + G+++ +GGTDNHL+LWDLRP+GLTGSKMEK+LE CSIS NKNT+ GDKS+ SP G+R+GTPA+T+RG E D K VA F A +A Q +G K+L AFV + + + +K ++ +VEAFAS+F PG
Sbjct: 21 GFPEKINFAVFPGLQGGPHEHQIAGVATQLKKVASPEFKQYSIQVKANARTLAEHMMAHGYKLMSGGTDNHLILWDLRPQGLTGSKMEKILEECSISVNKNTVAGDKSSLSPSGIRIGTPALTSRGFVEKDM-KQVAEFYHRATQIAIKIQAESG-KQLKAFVEGMHKCDEIKVVRTEVEAFASQFPMPG 208
BLAST of mRNA_H-elongata_contig49107.12092.1 vs. uniprot
Match: A0A7S0J5B3_9EUKA (Serine hydroxymethyltransferase n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J5B3_9EUKA) HSP 1 Score: 213 bits (543), Expect = 1.340e-63 Identity = 118/184 (64.13%), Postives = 138/184 (75.00%), Query Frame = 1
Query: 31 VDFAVFPALQGGPHNHQIAALATALREAARPEFKSYIRRVKANARALAAGLRTMGHEVATGGTDNHLLLWDLRPKGLTGSKMEKVLEACSISANKNTLYGDKSAASPGGVRLGTPAMTTRGLDETDFEKTVAGFLDEAASLACAAQERAGSKKLAAFVAELERDEGVKELKRDVEAFASRFYFP 582
V+FAVFP LQGGPHN+QIAALA ALREAA PEFK YI VKANA+ALAA L G+ + TGGTDNHL+LWDLRP LTGSK EK+ +A I+ NKN ++GD SAASPGGVRLGTPAM+TRGLDE DFE+ VA FL EA L+ + Q R+G +KL FVAEL V L++ V F+ RF P
Sbjct: 328 VNFAVFPCLQGGPHNNQIAALAVALREAATPEFKQYIAAVKANAQALAAALSARGYRIVTGGTDNHLVLWDLRPLRLTGSKFEKLCDAVGITLNKNAVFGDASAASPGGVRLGTPAMSTRGLDEADFEQ-VAEFLHEAIELSLSVQGRSG-RKLCDFVAELASTPEVALLRQRVRDFSVRFGMP 509 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49107.12092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig49107.12092.1 >prot_H-elongata_contig49107.12092.1 ID=prot_H-elongata_contig49107.12092.1|Name=mRNA_H-elongata_contig49107.12092.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=196bp TRRAEGLNDLVDFAVFPALQGGPHNHQIAALATALREAARPEFKSYIRRVback to top mRNA from alignment at H-elongata_contig49107:746..3974- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig49107.12092.1 ID=mRNA_H-elongata_contig49107.12092.1|Name=mRNA_H-elongata_contig49107.12092.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3229bp|location=Sequence derived from alignment at H-elongata_contig49107:746..3974- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig49107:746..3974- >mRNA_H-elongata_contig49107.12092.1 ID=mRNA_H-elongata_contig49107.12092.1|Name=mRNA_H-elongata_contig49107.12092.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1176bp|location=Sequence derived from alignment at H-elongata_contig49107:746..3974- (Himanthalia elongata Himel1 dioecious)back to top |