mRNA_H-elongata_contig49104.12091.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49104.12091.1
Unique NamemRNA_H-elongata_contig49104.12091.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig49104.12091.1 vs. uniprot
Match: A0A6H5KRR0_9PHAE (PlsC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRR0_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 7.460e-26
Identity = 41/56 (73.21%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:    1 QIDADFWFVFEVMRRVRRQGALKIILKDDEKHVPIIGWGMRGFGFIFLRRDWTKDR 168
            Q+D D+WF+FE+MR +RR GALKIILKDD+KH+P+ GWGMRGFGF+FL+RDW KDR
Sbjct:  118 QVDCDWWFLFELMRPLRRHGALKIILKDDQKHIPVTGWGMRGFGFVFLKRDWVKDR 173
[Close]
BLAST of mRNA_H-elongata_contig49104.12091.1 vs. uniprot
Match: A0A4D9D5I2_9STRA (PlsC domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5I2_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.310e-16
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 QIDADFWFVFEVMRRVRRQGALKIILKDDEKHVPIIGWGMRGFGFIFLRRDWTKDR 168
            Q+DADFW+ +EV R  + QG LKIILK +   VP++GWGMR F F FLRR+W +DR
Sbjct:   39 QVDADFWYCWEVARAHQLQGQLKIILKAELSQVPVVGWGMRQFEFCFLRRNWDQDR 94
[Close]
BLAST of mRNA_H-elongata_contig49104.12091.1 vs. uniprot
Match: W7THY1_9STRA (Putative 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7THY1_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.880e-16
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 QIDADFWFVFEVMRRVRRQGALKIILKDDEKHVPIIGWGMRGFGFIFLRRDWTKDR 168
            Q+DADFW+ +EV R  + QG LKIILK +   VP++GWGMR F F FLRR+W +DR
Sbjct:  187 QVDADFWYCWEVARAHQLQGQLKIILKAELSQVPVVGWGMRQFEFCFLRRNWEQDR 242
[Close]
BLAST of mRNA_H-elongata_contig49104.12091.1 vs. uniprot
Match: A0A1Q2U6T9_9STRA (Lysophosphatidate acyltransferase 4 n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A1Q2U6T9_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.330e-15
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 QIDADFWFVFEVMRRVRRQGALKIILKDDEKHVPIIGWGMRGFGFIFLRRDWTKDR 168
            Q+DADFW+V+EV R     G LKIILK D   VPI+GWGM+ F F FL+R+W +DR
Sbjct:  188 QVDADFWYVWEVARAYGMHGRLKIILKADLAVVPIVGWGMKQFEFCFLQRNWQRDR 243
[Close]
BLAST of mRNA_H-elongata_contig49104.12091.1 vs. uniprot
Match: A0A024G5U4_9STRA (PlsC domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G5U4_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.100e-13
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 QIDADFWFVFEVMRRVRRQGALKIILKDDEKHVPIIGWGMRGFGFIFLRRDWTKD 165
            QID+D+WF+F++ R  +  G +KI+LK+  K+VPI+GWGMR F F+FLRR    D
Sbjct:   21 QIDSDWWFLFQMARSAQAAGNIKIVLKEQLKYVPIVGWGMRWFEFLFLRRRLDHD 75
[Close]
BLAST of mRNA_H-elongata_contig49104.12091.1 vs. uniprot
Match: F0WLM4_9STRA (1acylsnglycerol3phosphate acyltransferase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WLM4_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.180e-13
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 QIDADFWFVFEVMRRVRRQGALKIILKDDEKHVPIIGWGMRGFGFIFLRRDWTKD 165
            QID+D+WF+F++ R  +  G +KI+LK+  K+VPI+GWGMR F F+FLRR    D
Sbjct:  101 QIDSDWWFLFQMARSAKAAGNIKIVLKEQLKYVPIVGWGMRWFEFLFLRRRLDHD 155
[Close]
BLAST of mRNA_H-elongata_contig49104.12091.1 vs. uniprot
Match: A0A484E7H3_BRELC (PlsC domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7H3_BRELC)

HSP 1 Score: 72.0 bits (175), Expect = 2.290e-13
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 QIDADFWFVFEVMRRVRRQGALKIILKDDEKHVPIIGWGMRGFGFIFLRRDWTKD 165
            Q+DAD+W++++  R  +  G +KI+LKD  K+VPIIGWGMR F F+FLRR   +D
Sbjct:   87 QVDADWWYIWQAARHQKAAGNIKIVLKDPLKYVPIIGWGMRLFDFLFLRRRIDED 141
[Close]
BLAST of mRNA_H-elongata_contig49104.12091.1 vs. uniprot
Match: K3X6I6_GLOUD (PlsC domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X6I6_GLOUD)

HSP 1 Score: 71.6 bits (174), Expect = 3.060e-13
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 QIDADFWFVFEVMRRVRRQGALKIILKDDEKHVPIIGWGMRGFGFIFLRRDWTKD 165
            Q+DAD+W++++  R  +  G +KI+LKD  K+VPIIGWGMR F F+FLRR    D
Sbjct:   86 QVDADWWYIWQAARAYKGAGNIKIVLKDQLKYVPIIGWGMRLFEFLFLRRSIDHD 140
[Close]
BLAST of mRNA_H-elongata_contig49104.12091.1 vs. uniprot
Match: A0A3M6VNZ5_9STRA (PlsC domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VNZ5_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.080e-13
Identity = 28/56 (50.00%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 QIDADFWFVFEVMRRVRRQGALKIILKDDEKHVPIIGWGMRGFGFIFLRRDWTKDR 168
            Q+DAD+W++++  R+ +  G +KI+LKD  K++PIIGWGMR F F+FLRR   +D+
Sbjct:   87 QVDADWWYIWQAARQQKAAGNIKIVLKDQLKYLPIIGWGMRLFEFLFLRRRVDQDQ 142
[Close]
BLAST of mRNA_H-elongata_contig49104.12091.1 vs. uniprot
Match: A0A3R7MW65_9STRA (PlsC domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7MW65_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 6.930e-13
Identity = 28/55 (50.91%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 QIDADFWFVFEVMRRVRRQGALKIILKDDEKHVPIIGWGMRGFGFIFLRRDWTKD 165
            Q+DAD+W++++  R  +  G +KI+LKD  K++PIIGWGMR F F+FLRR   +D
Sbjct:   43 QVDADWWYIWQAARHQQAAGNIKIVLKDQLKYLPIIGWGMRLFQFLFLRRRIDED 97
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49104.12091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRR0_9PHAE7.460e-2673.21PlsC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A4D9D5I2_9STRA4.310e-1658.93PlsC domain-containing protein n=1 Tax=Nannochloro... [more]
W7THY1_9STRA4.880e-1658.93Putative 1-acyl-sn-glycerol-3-phosphate acyltransf... [more]
A0A1Q2U6T9_9STRA2.330e-1558.93Lysophosphatidate acyltransferase 4 n=1 Tax=Nannoc... [more]
A0A024G5U4_9STRA1.100e-1352.73PlsC domain-containing protein n=1 Tax=Albugo cand... [more]
F0WLM4_9STRA1.180e-1352.731acylsnglycerol3phosphate acyltransferase putative... [more]
A0A484E7H3_BRELC2.290e-1352.73PlsC domain-containing protein n=1 Tax=Bremia lact... [more]
K3X6I6_GLOUD3.060e-1352.73PlsC domain-containing protein n=1 Tax=Globisporan... [more]
A0A3M6VNZ5_9STRA3.080e-1350.00PlsC domain-containing protein n=2 Tax=Peronospora... [more]
A0A3R7MW65_9STRA6.930e-1350.91PlsC domain-containing protein n=3 Tax=Phytophthor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49104contigH-elongata_contig49104:485..655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue2.2e-21
Seed eggNOG ortholog2880.D7G4B3
Preferred nameLPGAT1
KEGG rclassRC00004,RC00037
KEGG koko:K13514,ko:K15176
KEGG ReactionR09036
KEGG Pathwayko00564,map00564
GOsGO:0003674,GO:0003824,GO:0003841,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005811,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0008654,GO:0009058,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010565,GO:0012505,GO:0016020,GO:0016021,GO:0016411,GO:0016740,GO:0016746,GO:0016747,GO:0019216,GO:0019217,GO:0019222,GO:0019637,GO:0031224,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031984,GO:0036148,GO:0036149,GO:0042171,GO:0042175,GO:0042304,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045723,GO:0045834,GO:0045923,GO:0046471,GO:0046486,GO:0046488,GO:0046889,GO:0046890,GO:0047144,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0062012,GO:0062013,GO:0065007,GO:0071617,GO:0071704,GO:0080090,GO:0090407,GO:0098827,GO:1901576
EggNOG free text desc.1-acylglycerol-3-phosphate O-acyltransferase activity
EggNOG OGsCOG0204@1,KOG1505@2759
Ec32 ortholog descriptionacyltransferase
Ec32 orthologEc-02_002040.1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004,ko03021
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930808.2243967-CDS-H-elongata_contig49104:484..6551622930808.2243967-CDS-H-elongata_contig49104:484..655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49104 485..655 -
1691679579.1927133-CDS-H-elongata_contig49104:484..6551691679579.1927133-CDS-H-elongata_contig49104:484..655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49104 485..655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49104.12091.1prot_H-elongata_contig49104.12091.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49104 485..655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49104.12091.1

>prot_H-elongata_contig49104.12091.1 ID=prot_H-elongata_contig49104.12091.1|Name=mRNA_H-elongata_contig49104.12091.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
QIDADFWFVFEVMRRVRRQGALKIILKDDEKHVPIIGWGMRGFGFIFLRR
DWTKDR*
back to top

mRNA from alignment at H-elongata_contig49104:485..655-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49104.12091.1 ID=mRNA_H-elongata_contig49104.12091.1|Name=mRNA_H-elongata_contig49104.12091.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig49104:485..655- (Himanthalia elongata Himel1 dioecious)
CAGATCGATGCCGATTTCTGGTTTGTTTTCGAGGTGATGCGGCGCGTCCG
GCGGCAGGGCGCTCTGAAGATTATCCTCAAGGACGATGAAAAGCACGTGC
CGATCATCGGCTGGGGCATGCGGGGATTCGGTTTCATATTTCTCAGGAGA
GACTGGACGAAAGACAGGTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig49104:485..655-

>mRNA_H-elongata_contig49104.12091.1 ID=mRNA_H-elongata_contig49104.12091.1|Name=mRNA_H-elongata_contig49104.12091.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig49104:485..655- (Himanthalia elongata Himel1 dioecious)
CAGATCGATGCCGATTTCTGGTTTGTTTTCGAGGTGATGCGGCGCGTCCG
GCGGCAGGGCGCTCTGAAGATTATCCTCAAGGACGATGAAAAGCACGTGC
CGATCATCGGCTGGGGCATGCGGGGATTCGGTTTCATATTTCTCAGGAGA
GACTGGACGAAAGACAGGTAGCAGATCGATGCCGATTTCTGGTTTGTTTT
CGAGGTGATGCGGCGCGTCCGGCGGCAGGGCGCTCTGAAGATTATCCTCA
AGGACGATGAAAAGCACGTGCCGATCATCGGCTGGGGCATGCGGGGATTC
GGTTTCATATTTCTCAGGAGAGACTGGACGAAAGACAGGTAG
back to top