mRNA_H-elongata_contig49082.12086.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49082.12086.1
Unique NamemRNA_H-elongata_contig49082.12086.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49082.12086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49082contigH-elongata_contig49082:920..1602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size659
Cds size657
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930807.5892537-CDS-H-elongata_contig49082:921..12511622930807.5892537-CDS-H-elongata_contig49082:921..1251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49082 922..1251 -
1691679578.8939404-CDS-H-elongata_contig49082:921..12511691679578.8939404-CDS-H-elongata_contig49082:921..1251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49082 922..1251 -
1622930807.6273282-CDS-H-elongata_contig49082:1275..16021622930807.6273282-CDS-H-elongata_contig49082:1275..1602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49082 1276..1602 -
1691679578.9053884-CDS-H-elongata_contig49082:1275..16021691679578.9053884-CDS-H-elongata_contig49082:1275..1602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49082 1276..1602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49082.12086.1prot_H-elongata_contig49082.12086.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49082 922..1602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49082.12086.1

>prot_H-elongata_contig49082.12086.1 ID=prot_H-elongata_contig49082.12086.1|Name=mRNA_H-elongata_contig49082.12086.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=219bp
VAFLPQILDSPELSQATDRPRENTAAFRKTASSASDYGAAQQEVDGFRKG
THSANPGDAKRLLSALPIALENGHDSEGNDGVLAHVVALPAGRDRRRENH
KRPQEKGVMTKEENAEAFGEKADPGCKNNAAPQHKKTRRGKRAGAPTSTR
RGHKARTKGRTGRGDNNATISSKEGVVDPAEDEADARIVEGRVGEVEWTV
AERSALFPRDVDNHDAQGG
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mRNA from alignment at H-elongata_contig49082:920..1602-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49082.12086.1 ID=mRNA_H-elongata_contig49082.12086.1|Name=mRNA_H-elongata_contig49082.12086.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=683bp|location=Sequence derived from alignment at H-elongata_contig49082:920..1602- (Himanthalia elongata Himel1 dioecious)
GTCGCTTTTTTACCACAAATCCTGGATTCCCCCGAGCTGTCGCAGGCGAC
GGACCGTCCCCGCGAAAACACAGCGGCGTTTAGAAAAACAGCGTCGTCAG
CGAGCGACTACGGCGCGGCGCAGCAGGAAGTGGATGGTTTCCGCAAGGGA
ACGCACTCGGCAAATCCCGGTGATGCAAAGAGACTGTTGTCGGCGCTTCC
TATCGCTCTTGAGAATGGGCACGACTCTGAGGGGAATGACGGCGTGCTTG
CACATGTCGTGGCGCTGCCGGCAGGCCGAGATAGGCGAAGGGAGAACCAC
AAGCGGCCACAGGAGAAAGGGGTCATGGCGGGGGGAAACAACTCCCAAGA
GACGAAAGAGGAAAACGCTGAAGCCTTCGGCGAGAAGGCAGATCCGGGCT
GCAAGAATAACGCGGCTCCACAGCATAAAAAGACGCGCCGAGGGAAGCGC
GCGGGGGCTCCCACGAGCACGCGGCGGGGACACAAGGCGAGGACGAAGGG
TAGGACGGGTAGGGGGGATAACAATGCAACCATTTCCTCCAAGGAGGGTG
TCGTCGATCCAGCGGAGGATGAAGCGGATGCCCGTATCGTCGAAGGACGA
GTAGGAGAGGTAGAGTGGACGGTGGCGGAACGTTCAGCGTTGTTCCCGCG
AGACGTCGACAATCACGATGCTCAGGGTGGGAT
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Coding sequence (CDS) from alignment at H-elongata_contig49082:920..1602-

>mRNA_H-elongata_contig49082.12086.1 ID=mRNA_H-elongata_contig49082.12086.1|Name=mRNA_H-elongata_contig49082.12086.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1314bp|location=Sequence derived from alignment at H-elongata_contig49082:920..1602- (Himanthalia elongata Himel1 dioecious)
GTCGCTTTTTTACCACAAATCCTGGATTCCCCCGAGCTGTCGCAGGCGAC
GGACCGTCCCCGCGAAAACACAGCGGCGTTTAGAAAAACAGCGTCGTCAG
CGAGCGACTACGGCGCGGCGCAGCAGGAAGTGGATGGTTTCCGCAAGGGA
ACGCACTCGGCAAATCCCGGTGATGCAAAGAGACTGTTGTCGGCGCTTCC
TATCGCTCTTGAGAATGGGCACGACTCTGAGGGGAATGACGGCGTGCTTG
CACATGTCGTGGCGCTGCCGGCAGGCCGAGATAGGCGAAGGGAGAACCAC
AAGCGGCCACAGGAGAAAGGGGTCATGGTCGCTTTTTTACCACAAATCCT
GGATTCCCCCGAGCTGTCGCAGGCGACGGACCGTCCCCGCGAAAACACAG
CGGCGTTTAGAAAAACAGCGTCGTCAGCGAGCGACTACGGCGCGGCGCAG
CAGGAAGTGGATGGTTTCCGCAAGGGAACGCACTCGGCAAATCCCGGTGA
TGCAAAGAGACTGTTGTCGGCGCTTCCTATCGCTCTTGAGAATGGGCACG
ACTCTGAGGGGAATGACGGCGTGCTTGCACATGTCGTGGCGCTGCCGGCA
GGCCGAGATAGGCGAAGGGAGAACCACAAGCGGCCACAGGAGAAAGGGGT
CATGACGAAAGAGGAAAACGCTGAAGCCTTCGGCGAGAAGGCAGATCCGG
GCTGCAAGAATAACGCGGCTCCACAGCATAAAAAGACGCGCCGAGGGAAG
CGCGCGGGGGCTCCCACGAGCACGCGGCGGGGACACAAGGCGAGGACGAA
GGGTAGGACGGGTAGGGGGGATAACAATGCAACCATTTCCTCCAAGGAGG
GTGTCGTCGATCCAGCGGAGGATGAAGCGGATGCCCGTATCGTCGAAGGA
CGAGTAGGAGAGGTAGAGTGGACGGTGGCGGAACGTTCAGCGTTGTTCCC
GCGAGACGTCGACAATCACGATGCTCAGGGTGGGACGAAAGAGGAAAACG
CTGAAGCCTTCGGCGAGAAGGCAGATCCGGGCTGCAAGAATAACGCGGCT
CCACAGCATAAAAAGACGCGCCGAGGGAAGCGCGCGGGGGCTCCCACGAG
CACGCGGCGGGGACACAAGGCGAGGACGAAGGGTAGGACGGGTAGGGGGG
ATAACAATGCAACCATTTCCTCCAAGGAGGGTGTCGTCGATCCAGCGGAG
GATGAAGCGGATGCCCGTATCGTCGAAGGACGAGTAGGAGAGGTAGAGTG
GACGGTGGCGGAACGTTCAGCGTTGTTCCCGCGAGACGTCGACAATCACG
ATGCTCAGGGTGGG
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