mRNA_H-elongata_contig4907.12084.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig4907.12084.1 vs. uniprot
Match: D8LU32_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU32_ECTSI) HSP 1 Score: 600 bits (1548), Expect = 5.650e-188 Identity = 450/1150 (39.13%), Postives = 598/1150 (52.00%), Query Frame = 3
Query: 3 CEGNIADSNAGSKLSFFEDGNSLHLVMDTTKKARVCTGFKVKAVPEDKMPNDKNPYASVSHVLCANRK--GGRTCDKKVGAVKCYPPFSSNRLIFFQHKALLINGSRINSWKSAREQGLEKVQLIPPSKEDEERKFKPQERPPLIRSVTPAVAGGQESEEKASTRGEGLTITCPRSYQADVFRSVVESKRNSLVYLPSGLGGSLVAAMILKRLMSLNPERQAYVVVETVADAMQQAGELQKEVRSTVG---VLVGSSLGFEIVDGVDCDYRSSCQQKLMDFRAARLVVATAGALEDAMCKRYIDPDSICCVVLVLQDTYRHDSSKDNPLDRLAKTYFLPRAGEVNTMASEPSSASRLPKLVALMTSPPEVAFGGATSDDTPTVAVTETVARVEELLNTFGADLAAPVPTLQQVRNRTAGVELDIFNVSATPEETLLLRCLEKLLLGRVIKTAPDSDPA-VQAQSLLHS--------AAAASAHGSDGDKREGGETTQLPLRDSVWTFPSQSHVGLCQQALTLKVGRGAKTAPADRGAEKGGGEML---SPSGGDCKTVDKYHLTELMNFAYRVDEIGGELKLRRLLSLLDQEMENATEKKDGEDKICHGRGKSRKESVVQEKIGVVETDELDRDDAIHVIRSYLSSEDGSDGEDVEKTTEAEAGAGGGAVTSRGAAGGKAEALGSKLNMMVNLLKEHKDRCDGSQNEFSALVIVSTNDLARAIPQALGLVPALKPFLRVQHDLKLSEKSNAKFLVGTNRLGRGI-----GKSNVIVSTSACSEDLELPDRGLVICAD----GTALTKLTGRLRCGES-CRVVGLTRSCGEARLQRFRTLCQRESTMLGAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTTFDHPSSPLRMAPSPAGSTAAGTTSPLGGSSLDGDXXXXXXXXXXXXXXXALVKEIPISTLSVQVALPAAINEPTETTXXXXXXXXXXXXXXXXXXXXXXXXPAEAASAPAILKPSSSVATIVPDKPPSDASSGNGNGTEKAGSTEAPVDSVGDAKGWKKTLPDPPRAAVKKYAVTYLATCLRQTLQRHPDEMARCSINTTAQLAQAIKPVFEYDERRLPGQAHDAAF-EARCFVWSRLEELKGLIVVKEAKGVSIKAAREGAAQKI 3368
C+GNI D+ AG LSF DG S+HLVM +K+ R GF +K VP +K PN+ NPY SV++VLCANR+ G+ C+KKVG VKCYPP S N+LIFFQ KALL++ SWK+ RE L KV+L+P KE+EER+F P++ P L +S+ AGG G LT + PR YQ ++F +V+E +RNSLVYLP+GLG +LVAAM+LK+++ NPERQAY +VET A AMQQ LQ E+ TV +LVGSSL D+ KL R A +VVATAGA E MCKRYIDPD+ICCVVL H K++P +R+A+++ +A ++ + P A PKLVAL SP ++V +T R+ +LL+ ADLAAPV LQ+V++ T V+L++ NV+AT ET LL CLEKL+L R++ AP++ A QAQSLL S AAAA+A + G +P +D W FP++ LCQ+AL+ A A G + G ++ S + L LMN ++ VDEIGGE +R L LD + + GE G + ++E IGV++ + S +++ GSDG A +GG AV G GSKL + LL+EHK CD S FSALV VS +LA A P ++ KPF++ Q + LSE + N+ R + G NV+VSTS C E +++P LV+CA GT L +L GR+R E+ CR VGLTR+ G A +++C RE ML AI S + A + GS G LDG XXXXX A + + V +P + + P++ L P+ V P + G G G +T P D+ WK +LP A ++YA TYLATC+RQ LQR+PD+MARC++N+ AQLAQ IKPVFEYDER+L G + F EARC V SRLEEL GLI+VKEAKG SIKAAREGAA K+
Sbjct: 60 CKGNICDNRAGENLSFCVDGTSVHLVMGASKEGREGIGFGIKEVPANKQPNENNPYRSVAYVLCANRRPDNGQQCNKKVGGVKCYPPLSDNQLIFFQQKALLVDHQHPKSWKNVRESSLRKVKLLPAGKEEEERQFTPRQWPTLRKSL----AGGSNDPGHGGG-GMDLTRSTPRGYQEELFDAVMECERNSLVYLPTGLGKTLVAAMVLKQMLDWNPERQAYFLVETTALAMQQTTRLQNELGGTVKKIEMLVGSSLQAFGGKRGKIDHGLV---KLECVRDANIVVATAGAFEHCMCKRYIDPDAICCVVL----DEAHHCGKEHPFNRVARSFLTMKA--FPSVQATPDRAKEFPKLVALTASP------------AGELSVHDTTVRINQLLDRLEADLAAPVQHLQEVKSLTPSVDLELLNVTATASETTLLGCLEKLVLSRLVGLAPEASEAHAQAQSLLDSLGGRMRGAAAAATASTAAG--------ADVPRKDDAWVFPNKFFTALCQRALS------AGGAEQREGWWESDGTVMDEGSXXXXXXXXXEASQLHSLMNLSFAVDEIGGEAIWQRALEELDNGWTSGSSSSSGE-------GNDFSDPELEETIGVLKEN-----------LSAVATVSGSDGGSA-------AASGGDAVRRAG---------GSKLAKIAWLLEEHKRACDASGKRFSALVFVSRRELALATP---AMLEEAKPFVKAQSIVGLSEMT-------LNQQRRALASFQNGLKNVLVSTSVCGEGIDVPACALVVCASLPSSGTELVQLRGRIRSKENECRFVGLTRTAGAADKAHVKSICLREQNMLEAIRSLSGGGSS-----------------------------GSDVFRAKAGRGS----------GIVLDG---AAAAATXXXXXSLAGAPRTGVPGVCPPVNVPTSSGSAASPSQTVTRAQARAAQTSPGAPSPTAVAPSDPHPPGKELAPADEVTA-----PTAKGKEGRGGGVAPEAATAQPDDNP-----WKVSLPVTLSPAARRYAATYLATCVRQALQRNPDQMARCTLNSAAQLAQTIKPVFEYDERKLKGSGVNTCFFEARCIVTSRLEELAGLILVKEAKGSSIKAAREGAAVKV 1073
BLAST of mRNA_H-elongata_contig4907.12084.1 vs. uniprot
Match: A0A0H5R4I3_9EUKA (Uncharacterized protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R4I3_9EUKA) HSP 1 Score: 85.5 bits (210), Expect = 6.050e-13 Identity = 72/258 (27.91%), Postives = 122/258 (47.29%), Query Frame = 3
Query: 159 KNPYASVSHVLCANRKGGRTCDKKVGAVKCYPPFSSNRLIFFQHKALLINGSRINSWKSAREQG-LEKVQLIPPSKEDEERKFKPQERPPLIRSVTPAVAGGQESEEKASTRGEGLTITCPRSYQADVFRSVVESKRNSLVYLPSGLGGSLVAAMILKRLMSLNPERQAYVVVETVADAMQQAGELQKEVRS-TVGVLVGSSLGFEIVDGVDCDYRSSCQQKLMDFRAARLVVATAGALEDAMCKRYIDPDSICCVVL 926
K PY+ + + CA C K+GA+K + L+ + + N I+SWK+ EQ Q+ P + + F LI+ + ST LT + P YQ D+++ + NSL++LP+G G +L++AM ++R++ LNP A +VET A A+QQ L E+ ++ +LVGS L + + + R+A ++VATAG+ +A+ + +D IC +V+
Sbjct: 59 KAPYSKIGDLCCA------ACKYKIGAIKQFDSGDFGALL--KATTVTYNSVPISSWKTVVEQREWASCQVCQPDQPPSDTSF-------LIKQTF----NEDLTLVDTSTPVPQLTKSSPYDYQVDMYQRAMAMPDNSLIFLPTGFGKTLISAMFIRRMLQLNPLFSALFIVETNALAIQQYTVLINELGDLSIRILVGSMLPSK-----------PNINHIAELRSADIIVATAGSYLNAVEQNLLDFGRICALVM 286
BLAST of mRNA_H-elongata_contig4907.12084.1 vs. uniprot
Match: UPI001425AD08 (endoribonuclease Dicer homolog 3a-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425AD08) HSP 1 Score: 67.8 bits (164), Expect = 1.830e-7 Identity = 69/279 (24.73%), Postives = 126/279 (45.16%), Query Frame = 3
Query: 495 EGLTITCPRSYQADVFRSVVESKRNSLVYLPSGLGGSLVAAMILKRLMSLNPERQAYVVVETVADAMQQAGELQKEVR----STVGVLVGSSLGFEIVDGVDCDYRSSCQQKLMDFRAARLVVATAGALEDAMCKRYIDPDSICCVVLVLQDTYRHDSSKDNPLDRLAKTYFLPRAGEVNTMASEPSSASRLPKLVALMTSPPEVAFGGATSDDTPTVAVTETVARVEELLNTFG-ADLAAPVPTLQQVRNRTAGVELDIFNVSATPEETLLLRCLEKL 1316
+ LT T R+YQ +++ +ES RN++++L +G G +LVAAMI + ++ +NP RQ +V+ + +QQ+ L+KE+ ST+ + G + S + + + +VV T + + K+ + ++IC +V H KD+P + + K Y+ + PK+V L SP G T + T +V + LL G A+LA V +++ + +L++ + P+ LL L+ L
Sbjct: 263 DSLTSTKSRNYQRELYMQAMES-RNAVIFLQTGTGKTLVAAMIARTMLVMNPGRQVVFLVDKILLCIQQSDYLEKELGVSYLSTIPKIARLCGGGRTI---------SANEHISQYD---IVVVTGEYFRNLLRKKTMFWENICLIVF----DEAHHCHKDHPYNMIMKDYY--------------KKSDHKPKVVGLSASP----VGLNTKEATESV--------LSHLLANLGDAELACVVENWRELEGFRSKSKLEVKAMKLDPKLDYLLNKLKVL 498
BLAST of mRNA_H-elongata_contig4907.12084.1 vs. uniprot
Match: A0A6P8HVX5_ACTTE (RNA-directed RNA polymerase n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HVX5_ACTTE) HSP 1 Score: 63.9 bits (154), Expect = 3.690e-6 Identity = 36/91 (39.56%), Postives = 56/91 (61.54%), Query Frame = 3
Query: 501 LTITCPRSYQADVFRSVVESKRNSLVYLPSGLGGSLVAAMILKRLMSLNPERQAYVVVETVADAMQQAGELQKEVRS-TVGVLVGSSLGFE 770
LT+ PR YQA++FR + NSLV+LP+G G +L+AAM + + LNP + A +V+ + A QQ ++ +V S TVG++ G + E
Sbjct: 168 LTLHNPREYQAELFRYAMHG--NSLVFLPTGSGKTLIAAMSISCMKKLNPGKLAVFIVDRIPLAHQQGEYIKNQVPSLTVGIMAGDAASSE 256
BLAST of mRNA_H-elongata_contig4907.12084.1 vs. uniprot
Match: UPI000C0483E4 (uncharacterized protein LOC111346816 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C0483E4) HSP 1 Score: 60.5 bits (145), Expect = 3.850e-5 Identity = 46/159 (28.93%), Postives = 77/159 (48.43%), Query Frame = 3
Query: 426 LIRSVTPAVAGGQESEEKASTRG------EGLTITC----------PRSYQADVFRSVVESKRNSLVYLPSGLGGSLVAAMILKRLMSLNPERQAYVVVETVADAMQQAGELQKEVRS-TVGVLVGSSLGFEIVDGVDCDYRSSCQQKLMDFRAARLVV 851
++ T A+A G+ + + ++ GLT T PR YQ ++F S + N+LVYLP+G G +L+AAM++ + LNP + ++V+ V A QQ ++ +++ TV LVG ++ S QKL D + LV+
Sbjct: 102 VVNITTHALATGRADQSRGDSKAMVYCDTSGLTHTSHEIDSLTREEPRDYQRELFLSAMRG--NTLVYLPTGSGKTLIAAMVMSCMKKLNPSKVMVLLVDRVPLAHQQRDYIKSQLKDLTVETLVGE---------MESPQNGSIHQKLADNKVDVLVL 249
BLAST of mRNA_H-elongata_contig4907.12084.1 vs. uniprot
Match: A0A2B4R985_STYPI (RNA-directed RNA polymerase n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4R985_STYPI) HSP 1 Score: 60.5 bits (145), Expect = 4.130e-5 Identity = 46/159 (28.93%), Postives = 77/159 (48.43%), Query Frame = 3
Query: 426 LIRSVTPAVAGGQESEEKASTRG------EGLTITC----------PRSYQADVFRSVVESKRNSLVYLPSGLGGSLVAAMILKRLMSLNPERQAYVVVETVADAMQQAGELQKEVRS-TVGVLVGSSLGFEIVDGVDCDYRSSCQQKLMDFRAARLVV 851
++ T A+A G+ + + ++ GLT T PR YQ ++F S + N+LVYLP+G G +L+AAM++ + LNP + ++V+ V A QQ ++ +++ TV LVG ++ S QKL D + LV+
Sbjct: 102 VVNITTHALATGRADQSRGDSKAMVYCDTSGLTHTSHEIDSLTREEPRDYQRELFLSAMRG--NTLVYLPTGSGKTLIAAMVMSCMKKLNPSKVMVLLVDRVPLAHQQRDYIKSQLKDLTVETLVGE---------MESPQNGSIHQKLADNKVDVLVL 249
BLAST of mRNA_H-elongata_contig4907.12084.1 vs. uniprot
Match: UPI00077A0B41 (putative ATP-dependent DNA helicase fml2 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A0B41) HSP 1 Score: 59.3 bits (142), Expect = 7.840e-5 Identity = 62/238 (26.05%), Postives = 109/238 (45.80%), Query Frame = 3
Query: 501 LTITCPRSYQADVFRSVVESKRNSLVYLPSGLGGSLVAAMILKRLMSLNPERQAYVVVETVADAMQQAGELQKEVRSTVGVLVGSSLGFEIVDGVDCDYRSSCQQKLMDFRAARLVVATAGALE--DAMCKRYIDPDSICCVVLVLQDTYRHDSSKDNPLDRLAKTYFLPRAGEVNTMASEPSSASRLPKLVALMTSPPEVAFGGATSDDTPTVAVTETVARVEELLNTFGADLAAPV 1208
LT PR YQ ++F S + RN+LVYLP+G G +L+AAM+L + LNP + +V+ + QQ+ ++K++ G+ VGS G ++ + S +KL + + LV+ L D R D VLV + H ++P +++ ++ + P S P ++ L SP +++ T++++EELLN +++ PV
Sbjct: 173 LTRENPRDYQRELFLSTM--CRNTLVYLPTGSGKTLIAAMVLSCMRELNPGKLMVFLVDRIPLVFQQSNYIKKQLP---GLKVGSLAGE-----MEPEQLQSVHKKLAERKIDVLVLTHQIFLNALDTQTNRMSDIS-----VLVFDEA--HHCQGNHPYNKIMSQFYR----------NNPKSLK--PLVLGLSASP------------AGELSMKRTLSKLEELLNNLECNISTPV 369 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4907.12084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig4907.12084.1 >prot_H-elongata_contig4907.12084.1 ID=prot_H-elongata_contig4907.12084.1|Name=mRNA_H-elongata_contig4907.12084.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1128bp MDTTKKARVCTGFKVKAVPEDKMPNDKNPYASVSHVLCANRKGGRTCDKKback to top mRNA from alignment at H-elongata_contig4907:2167..11491- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig4907.12084.1 ID=mRNA_H-elongata_contig4907.12084.1|Name=mRNA_H-elongata_contig4907.12084.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=9325bp|location=Sequence derived from alignment at H-elongata_contig4907:2167..11491- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig4907:2167..11491- >mRNA_H-elongata_contig4907.12084.1 ID=mRNA_H-elongata_contig4907.12084.1|Name=mRNA_H-elongata_contig4907.12084.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=6768bp|location=Sequence derived from alignment at H-elongata_contig4907:2167..11491- (Himanthalia elongata Himel1 dioecious)back to top |