mRNA_H-elongata_contig4906.12083.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4906.12083.1
Unique NamemRNA_H-elongata_contig4906.12083.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig4906.12083.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.390e-10
Identity = 31/71 (43.66%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:    4 PHVDFVARVFAGIDTISCQGERNFPTLKLVVSDLRASLGVAKIEKILFLRLNKPLIPGLGKVVSELEALKA 216
            PH+  +AR+F GI++ SCQ ERNF  L  ++  LR+S+   K+E+++FLRLN+  IP +  +   +EA KA
Sbjct:  412 PHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEVKALHDAVEANKA 482
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BLAST of mRNA_H-elongata_contig4906.12083.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.420e-10
Identity = 31/71 (43.66%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:    4 PHVDFVARVFAGIDTISCQGERNFPTLKLVVSDLRASLGVAKIEKILFLRLNKPLIPGLGKVVSELEALKA 216
            PH+  +AR+F GI++ SCQ ERNF  L  ++  LR+S+   K+E+++FLRLN+  IP +  +   +EA KA
Sbjct:  740 PHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEVKALHDAVEANKA 810
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BLAST of mRNA_H-elongata_contig4906.12083.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 9.990e-8
Identity = 25/73 (34.25%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:    4 PHVDFVARVFAGIDTISCQGERNFPTLKLVVSDLRASLGVAKIEKILFLRLNKPLIPGLGKVVSELEALKAQR 222
            P++ F+AR++ GI+  SCQ ERNF  L  ++  LR ++  +K+E+++F+RLN+ L+  + ++ + +   KA +
Sbjct:  556 PYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVVKAKAAK 628
[Close]
BLAST of mRNA_H-elongata_contig4906.12083.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.010e-7
Identity = 25/73 (34.25%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:    4 PHVDFVARVFAGIDTISCQGERNFPTLKLVVSDLRASLGVAKIEKILFLRLNKPLIPGLGKVVSELEALKAQR 222
            P++ F+AR++ GI+  SCQ ERNF  L  ++  LR ++  +K+E+++F+RLN+ L+  + ++ + +   KA +
Sbjct:  751 PYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVVKAKAAK 823
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4906.12083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE1.390e-1043.66Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE1.420e-1043.66Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JTB8_9PHAE9.990e-834.25Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE1.010e-734.25Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4906contigH-elongata_contig4906:11319..11540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930807.2253654-CDS-H-elongata_contig4906:11318..115401622930807.2253654-CDS-H-elongata_contig4906:11318..11540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4906 11319..11540 -
1691679578.668808-CDS-H-elongata_contig4906:11318..115401691679578.668808-CDS-H-elongata_contig4906:11318..11540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4906 11319..11540 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4906.12083.1prot_H-elongata_contig4906.12083.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4906 11319..11540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4906.12083.1

>prot_H-elongata_contig4906.12083.1 ID=prot_H-elongata_contig4906.12083.1|Name=mRNA_H-elongata_contig4906.12083.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
WPHVDFVARVFAGIDTISCQGERNFPTLKLVVSDLRASLGVAKIEKILFL
RLNKPLIPGLGKVVSELEALKAQR
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mRNA from alignment at H-elongata_contig4906:11319..11540-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4906.12083.1 ID=mRNA_H-elongata_contig4906.12083.1|Name=mRNA_H-elongata_contig4906.12083.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=222bp|location=Sequence derived from alignment at H-elongata_contig4906:11319..11540- (Himanthalia elongata Himel1 dioecious)
TGGCCGCATGTAGACTTTGTCGCGCGAGTGTTCGCAGGGATCGACACAAT
TAGCTGTCAAGGAGAGAGGAATTTTCCCACCCTCAAGTTGGTCGTTAGTG
ACCTCCGCGCTAGCCTAGGAGTTGCCAAGATTGAGAAGATTTTGTTCCTC
AGGCTCAACAAGCCCCTTATTCCTGGGTTAGGCAAGGTTGTCAGCGAGTT
GGAAGCCTTGAAGGCACAGCGG
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Coding sequence (CDS) from alignment at H-elongata_contig4906:11319..11540-

>mRNA_H-elongata_contig4906.12083.1 ID=mRNA_H-elongata_contig4906.12083.1|Name=mRNA_H-elongata_contig4906.12083.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig4906:11319..11540- (Himanthalia elongata Himel1 dioecious)
TGGCCGCATGTAGACTTTGTCGCGCGAGTGTTCGCAGGGATCGACACAAT
TAGCTGTCAAGGAGAGAGGAATTTTCCCACCCTCAAGTTGGTCGTTAGTG
ACCTCCGCGCTAGCCTAGGAGTTGCCAAGATTGAGAAGATTTTGTTCCTC
AGGCTCAACAAGCCCCTTATTCCTGGGTTAGGCAAGGTTGTCAGCGAGTT
GGAAGCCTTGAAGGCACAGCGGTGGCCGCATGTAGACTTTGTCGCGCGAG
TGTTCGCAGGGATCGACACAATTAGCTGTCAAGGAGAGAGGAATTTTCCC
ACCCTCAAGTTGGTCGTTAGTGACCTCCGCGCTAGCCTAGGAGTTGCCAA
GATTGAGAAGATTTTGTTCCTCAGGCTCAACAAGCCCCTTATTCCTGGGT
TAGGCAAGGTTGTCAGCGAGTTGGAAGCCTTGAAGGCACAGCGG
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