mRNA_H-elongata_contig4899.12072.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig4899.12072.1 vs. uniprot
Match: D7FKS6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKS6_ECTSI) HSP 1 Score: 350 bits (899), Expect = 5.300e-109 Identity = 198/344 (57.56%), Postives = 238/344 (69.19%), Query Frame = 3
Query: 552 YTPPSAGRDIRGAGDSRVHIDFRGKEGSRRGNRIRVNPGVEKSTSDAISAGDVAVIGGFTTGVMAIQRYNRRRFLQESGGGYESGSSTSAAVDGHLGK----ETAVVTSLQLSMFCDRQAGKWGILTALEDLSRTANVKSPRGLSVLVSEVCLTLLRAERDWIGAAGSIKEYRPHVRGARKGKKNESSRPSSRAKRDFNRAVTRERSKWERETVYNTPDQGFSSSNKAPGRRGLGVPDS-TYAVATLVVAWARLRSISPTSETRKSTRRWLEGDNRD-DHDRDVVFTVVNRKSVITFLEWIVEEAAEGRGENLLDVEVLWTPADPDDSLDRDDLDVKWPELRGI 1565
Y P AGRDI G+ SR HI F G G RR R R NP + S +I+ GDVA+IGG + V A+QRYNR+RF+ E G SG SA + G+ +TAVVT+LQL ++CDRQ G+ +L L+ LS+TA+V SPRGLS L++EVCLTLLR+ RDW+G GS+K Y R +GKK S P SRAKRDFNRA RERSKWERETV NTPD+GFSSS AP G S TYAVATL+VAW+ L S P +E R+ W D+RD D DR V F+VVNR+S +T LEW+ +EAAEGRGEN+LDVEVLWTPADPDDSLDR+DLD KWPELR +
Sbjct: 206 YQRPRAGRDIYGSEGSRFHIRFDGGRGGRRSTRARFNPYDGDAPSTSITPGDVAMIGGVSAAVAAVQRYNRKRFVDEEG----SGQRPSAPLPPRSGRGGSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKMYASEGRSNSRGKK---SSPVSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSST-APSWGGFSAQKSGTYAVATLIVAWSGLNSTPPRAEPRRGG--WFTRDSRDRDDDRGVEFSVVNRQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 539
BLAST of mRNA_H-elongata_contig4899.12072.1 vs. uniprot
Match: A0A835ZEJ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEJ7_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 5.120e-16 Identity = 81/257 (31.52%), Postives = 122/257 (47.47%), Query Frame = 3
Query: 801 SGSSTSAAVDG-HLGKETAVVTSLQLSMFCDRQAGKWGILTALEDLSRTANVKSPRGLSVLVSEVCLTLLRAERDWIGAAGSIKEYRPHVRGARKGKKNESSRPSSRAKRDFNRAVTRERSKWERETVYNTPDQGFSSSNKAPGRRGLGVPDSTYAVATLVVAWARLRSISPTSETRKSTRRWLEGDNRDDHDRDVVFTVVNRKSVI-TFLEWIVEEAAEGRGENLLDVEVLWTPADPDDSLDRDDLDVKWPELRGI 1565
SG +S V+G LG+ VV LQ+++ ++ + GIL L+ ++ A S GLS VSEVCL L+R + DWI +A + + P R + RA+ FN ER+K ERETV + S S ++ G R + T AV T+V+A L+G++ R + +N S + L + +A GEN+L VE+LWTP +P +SLDR + +PEL +
Sbjct: 182 SGGWSSVDVEGGSLGRGVGVV-KLQVALNASDRSSR-GILAQLKSIAERAETSSRGGLSTAVSEVCLALVRRQPDWIASASQYEYFAP--------------RSAERAEAVFNTYAIAERTKVERETVSRFGGEDLSDSRRSDGVRPEDLGKPTQAVVTIVLA--------------------LKGESL---KRFQLERSINSASALRNVLTQVAGDATTDDGENVLGVELLWTPEEPWESLDRQAVLEDFPELMDL 399
BLAST of mRNA_H-elongata_contig4899.12072.1 vs. uniprot
Match: A0A7S0QBA5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QBA5_9EUKA) HSP 1 Score: 80.5 bits (197), Expect = 2.730e-13 Identity = 79/232 (34.05%), Postives = 108/232 (46.55%), Query Frame = 3
Query: 867 LQLSMFC-DRQAGKWGILTALEDLSRTANVKSPRGLSVLVSEVCLTLLRAERDWIGAAGSIKEYRPHVRGARKGKKNESSRPSSRAKRDFNRAVTRERSKWERETVYNTPDQGFSSSNKAPGRRGLGVPDSTYAVATLVVAWARLRSISPTSETRKSTRRWLEGDNRDDHDRDVVFTVVNRKSVITFLEWIVEEAAEGRGE-NLLDVEVLWTPADPDDSLDRDDLDVKWPEL 1556
LQ++ +C DRQ +G L+ L+RTA+ S GL LVS+ CL LR+ +DW+ AA + E + S+ + +NR V +ERSKWE S K+ R G ++TY VATLVV LR+ S E T VN E I + AA+ E NL+ EVLWTP DP+D +DRDD+ + +PEL
Sbjct: 62 LQVACYCGDRQNSLYG---KLQSLARTADTSSYEGLQQLVSDTCLATLRSSKDWL-AARTTSETKGLF--------------SNDVESQYNRIVVKERSKWE-------------SEQKSLTRTSAG--EATYMVATLVVL---LRNGSELPEV----------------------TGVNE-----LREAISQLAADVSIEDNLIAAEVLWTPEDPNDVMDRDDMFLNFPEL 230
BLAST of mRNA_H-elongata_contig4899.12072.1 vs. uniprot
Match: A0A6T9D2F6_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A6T9D2F6_9EUKA) HSP 1 Score: 75.1 bits (183), Expect = 9.030e-12 Identity = 73/238 (30.67%), Postives = 107/238 (44.96%), Query Frame = 3
Query: 867 LQLSMFC-DRQAGKWGILTALEDLSRTANVKSPRGLSVLVSEVCLTLLRAERDWIGAAGSIKEYRPHVRGARKGKKNESSRPSSRAKRDFNRAVTRERSKWERETVYNTPDQGFSSSNKAPGRRGLGVPDSTYAVATLVV---AWARLRSISPTSETRKSTRRWLEGDNRDDHDRDVVFTVVNRKSVITFLEWIVEEAAEGRGE-NLLDVEVLWTPADPDDSLDRDDLDVKWPELRGI 1565
LQ++ +C DRQ G L+ ++RTA+ S GL L S+ CL +LR +DW+ AA ++ S+ + + +NR V +ER+KW+ E S APG+ TY VATLVV + + L +IS S+ R++ I + AA+ E NLL EVLWTP D +D +DRDD+ + +PEL I
Sbjct: 24 LQVACYCEDRQTSLAG---KLQSIARTADAGSYEGLQALCSDTCLAMLRTSKDWL-AARTVSST--------------STMFQNDVESTYNRLVVQERAKWDMEAK--------SLKRSAPGQ-------PTYMVATLVVLLRSGSELPAISGVSDLREA---------------------------------IAQLAADVSVEDNLLAAEVLWTPEDTNDVMDRDDMFLNFPELVSI 195
BLAST of mRNA_H-elongata_contig4899.12072.1 vs. uniprot
Match: A0A0M0K0F2_9EUKA (Membrane protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K0F2_9EUKA) HSP 1 Score: 74.7 bits (182), Expect = 2.390e-11 Identity = 72/234 (30.77%), Postives = 103/234 (44.02%), Query Frame = 3
Query: 867 LQLSMFCD-RQAGKWGILTALEDLSRTANVKSPRGLSVLVSEVCLTLLRAERDWIGAAGSIKEYRPHVRGARKGKKNESSRPSSRAKRDFNRAVTRERSKWERETVYNTPDQGFSSSNKAPGRRGLGVPDSTYAVATLVVAWARLRSISPTSETRKSTRRWLEGDNRDDHDRDVVFTVVNRKSVITFLEWIVEEAAEGRGENLLDVEVLWTPADPDDSLDRDDLDVKWPELRGI 1565
LQ++ +CD RQ +G L ++ +A+ S GL LVS+ CL +LR+ +DW+ A + G K + + +NR V ERSKWE E KA R G P TY VATLVV + + P S+ GD RD + N + ++ +NLL EVLWTP D +D +DRD+L + +PEL +
Sbjct: 58 LQVACYCDDRQNSLFG---KLNKIASSADTDSELGLQSLVSDTCLAILRSSKDWLAA-----RTESEIAGLLKNDVDAA----------YNRLVVTERSKWEVE-------------QKALKRTAPGQP--TYMVATLVVLLRSAQPLKPISQN---------GDLRD--------ALQNLAAAVSV------------DDNLLAAEVLWTPEDTNDVMDRDELFLNFPELVSV 229
BLAST of mRNA_H-elongata_contig4899.12072.1 vs. uniprot
Match: A0A6T0A215_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A6T0A215_CHRCT) HSP 1 Score: 76.3 bits (186), Expect = 3.930e-11 Identity = 74/248 (29.84%), Postives = 107/248 (43.15%), Query Frame = 3
Query: 837 LGKETAVVTSLQLSMFC-DRQAGKWGILTALEDLSRTANVKSPRGLSVLVSEVCLTLLRAERDWIGAAGSIKEYRPHVRGARKGKKNESSRPSSRAKRDFNRAVTRERSKWERETVYNTPDQGFSSSNKAPGRRGLGVPDSTYAVATLVVAW---ARLRSISPTSETRKSTRRWLEGDNRDDHDRDVVFTVVNRKSVITFLEWIVEEAAEGRGE-NLLDVEVLWTPADPDDSLDRDDLDVKWPELRGI 1565
+G + +QL+ +C DR+ +G L+ L+RTA + GL LVS+ CL +LR+ DW+ A S +++G K + +NR V +ERSKWE E Q S + G+ TY V TLVV + L +IS T R + I + AA+ E NL+ EVLWTP + DD +DRDD+ + +PEL I
Sbjct: 174 MGDDPGAAYCIQLACYCGDREKSLYG---RLQSLARTAETDTYEGLQQLVSDTCLAMLRSSNDWLAARTST-----NLKGFFKND----------VESQYNRIVVQERSKWESE------QQQLSRTTSKAGQ-------PTYMVVTLVVLLREGSELPAISGTPTLRDA---------------------------------IAQLAADVSVEDNLIAAEVLWTPEEDDDVMDRDDMFLNFPELITI 357
BLAST of mRNA_H-elongata_contig4899.12072.1 vs. uniprot
Match: A0A7S2X718_9EUKA (Hypothetical protein n=3 Tax=Lotharella TaxID=74819 RepID=A0A7S2X718_9EUKA) HSP 1 Score: 69.7 bits (169), Expect = 5.710e-9 Identity = 71/242 (29.34%), Postives = 109/242 (45.04%), Query Frame = 3
Query: 834 HLGKETAVVTSLQLSMFCDRQAGKWGILTALEDLSRTANVKSPRGLSVLVSEVCLTLLRAERDWIGAAGSIKEYRPHVRGARKGKKNESSRPSSRAKRDFNRAVTRERSKWERETVYNTPDQGFSSSNKAPGR-RGLGVPDSTYAVATLVVAWARLRSISPTSETRKSTRRWLEGDNRDDHDRDVVFTVVNRKSVITFLEWIVEEAAEGRGENLLDVEVLWTPADPDDSLDRDDLDVKWPEL 1556
+L T V LQ++++C + G + L +L+ A+ S GL LV E L LLR+E DW+ AG + ++ + G S+ + FN+A+ +ER+K+E E GR + +G +Y + T++VA LR +P T + D R + R S+ ENLL EVLWTP DPDDSL R+++ +K+PEL
Sbjct: 180 YLEASTGTVMLLQVAVYCGDR-GPNSLYGRLNNLAAGADTWSEEGLRNLVQETTLALLRSEEDWV--AGRSETFQKGMLGK-----------SNDVESAFNQALLKERAKFEEENT---------------GRLKRVGANKPSYMIVTVMVA---LRD-APNLPTIRGL----------DEMRSALAMTSARASI---------------EENLLAAEVLWTPEDPDDSLTREEVFLKFPEL 363
BLAST of mRNA_H-elongata_contig4899.12072.1 vs. uniprot
Match: R1FD01_EMIHU (Uncharacterized protein (Fragment) n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FD01_EMIHU) HSP 1 Score: 67.8 bits (164), Expect = 1.720e-8 Identity = 68/234 (29.06%), Postives = 106/234 (45.30%), Query Frame = 3
Query: 867 LQLSMFCD-RQAGKWGILTALEDLSRTANVKSPRGLSVLVSEVCLTLLRAERDWIGAAGSIKEYRPHVRGARKGKKNESSRPSSRAKRDFNRAVTRERSKWERETVYNTPDQGFSSSNKAPGRRGLGVPDSTYAVATLVVAWARLRSISPTSETRKSTRRWLEGDNRDDHDRDVVFTVVNRKSVITFLEWIVEEAAEGRGENLLDVEVLWTPADPDDSLDRDDLDVKWPELRGI 1565
LQ++ +CD R +G L+ ++R+A +S GL L S+ CL +LR+ +DW+ AG + + ++ + +NR V +ERSKWE E QG + + APG+ TY VATLVV R + V T + + I+ L + + E +NLL E+LWTP D +D ++RDDL + +PEL +
Sbjct: 151 LQVACYCDDRNDSLYG---RLQSVARSAETQSYEGLQRLCSDSCLAMLRSSKDWL--AGRTESTTAGLL-------------TNDVETSYNRLVVQERSKWESE-------QG-ALTRSAPGQ-------PTYMVATLVVLL------------------------RQGSELPSVSTAADLREAISALA--ADVSVE---DNLLAAELLWTPEDGNDVMERDDLFLNFPELVNV 322
BLAST of mRNA_H-elongata_contig4899.12072.1 vs. uniprot
Match: A0A7S4DSS3_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DSS3_9EUKA) HSP 1 Score: 67.4 bits (163), Expect = 3.130e-8 Identity = 70/241 (29.05%), Postives = 108/241 (44.81%), Query Frame = 3
Query: 837 LGKETAVVTSLQLSMFCDRQAGKWGILTALEDLSRTANVKSPRGLSVLVSEVCLTLLRAERDWIGAAGSIKEYRPHVRGARKGKKNESSRPSSRAKRDFNRAVTRERSKWERETVYNTPDQGFSSSNKAPGR-RGLGVPDSTYAVATLVVAWARLRSISPTSETRKSTRRWLEGDNRDDHDRDVVFTVVNRKSVITFLEWIVEEAAEGRGENLLDVEVLWTPADPDDSLDRDDLDVKWPEL 1556
L T V LQ++++C + G + L +L+ A+ S GL LV E L LLR+E DW+ AG + ++ + G S+ + FN+A+ +ER+K+E E GR + +G +Y + T++VA LR +P T + D R + R S+ ENLL EVLWTP DP+DSL R+++ +K+PEL
Sbjct: 178 LEASTGTVMLLQVAVYCGDR-GPNSLYGRLNNLAAGADTWSEEGLRNLVQETTLALLRSEEDWV--AGRSETFQKGMLGK-----------SNDVESAFNQALLKERAKFEEENT---------------GRLKRVGANKPSYMIVTVMVA---LRD-APNLPTIRGL----------DEMRSALAMTSARASI---------------EENLLAAEVLWTPEDPEDSLTREEVFLKFPEL 360
BLAST of mRNA_H-elongata_contig4899.12072.1 vs. uniprot
Match: A0A7S2IDZ6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IDZ6_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 4.990e-8 Identity = 72/258 (27.91%), Postives = 114/258 (44.19%), Query Frame = 3
Query: 804 GSSTSAAVDGHLGKETAVVTSLQLSMFCDRQAGKWGILTALEDLSRTANVKSPRGLSVLVSEVCLTLLRAERDWIGAAGSIKEYRPHVRGARKGKKNESSRPSSRAKRDFNRAVTRERSKWERETV--YNTPDQG--FSSSNKAPGRRGLGVPDSTYAVATLVVAWARLRSISPTSETRKSTRRWLEGDNRDDHDRDVVFTVVNRKSVITFLEWIVEEAAEGRGENLLDVEVLWTPADPDDSLDRDDLDVKWPELRGI 1565
G+ T AA D LG +VV L ++M + IL+ ++ LSRTA S G+S L+S+V L LLR + + A+ S K+ + + A+R+FN +ERSK+E+ET+ Y D G S ++ +P +T AV TL+++ ++GD+ V + + V + L I + G E L E+LWTP + D L D+ +P+L I
Sbjct: 264 GTRTVAATDSALGDGVSVV-KLSVAMNVPNRDDPNSILSVIDRLSRTAKTDSRMGVSNLMSQVSLELLRRKDSIVAASSSYKKVKDPTK----------------AQREFNTLSVKERSKFEKETISRYGGVDYGSKVSGASSSPN----DTHKATMAVVTLLLS--------------------IDGDSTQ------VPKIRSASDVASALSRIASDVKVG--ECLRSAEILWTPEERSDVLSTRDILADYPDLATI 472 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4899.12072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig4899.12072.1 >prot_H-elongata_contig4899.12072.1 ID=prot_H-elongata_contig4899.12072.1|Name=mRNA_H-elongata_contig4899.12072.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=488bp MTHASFVSPRIAFYAPPAPPPNLNFPTRKGLTPSRWPRCCPGATIVLCAEback to top mRNA from alignment at H-elongata_contig4899:7541..10823+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig4899.12072.1 ID=mRNA_H-elongata_contig4899.12072.1|Name=mRNA_H-elongata_contig4899.12072.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3283bp|location=Sequence derived from alignment at H-elongata_contig4899:7541..10823+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig4899:7541..10823+ >mRNA_H-elongata_contig4899.12072.1 ID=mRNA_H-elongata_contig4899.12072.1|Name=mRNA_H-elongata_contig4899.12072.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2928bp|location=Sequence derived from alignment at H-elongata_contig4899:7541..10823+ (Himanthalia elongata Himel1 dioecious)back to top |