mRNA_H-elongata_contig48971.12070.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48971.12070.1
Unique NamemRNA_H-elongata_contig48971.12070.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig48971.12070.1 vs. uniprot
Match: A0A6H5JQT4_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQT4_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 7.850e-31
Identity = 56/83 (67.47%), Postives = 70/83 (84.34%), Query Frame = 1
Query:    1 LRVTISWIDPASTTFSAKQLVHDLDLTVISPSGTVHRMWSTGEPDTYNVNERVIVGAADVQNGTWTIWVWANELSTYVQSYSL 249
            LRVT+SW+DP +TTFSA QLVHDLDL VISP+GT + MW++G  D+ NVNERVIV A DV+ GTW++W+WA+ L+T VQSYSL
Sbjct:  878 LRVTLSWLDPPATTFSAVQLVHDLDLVVISPNGTRYTMWASGVTDSANVNERVIVDAGDVETGTWSVWIWADNLTTDVQSYSL 960          
BLAST of mRNA_H-elongata_contig48971.12070.1 vs. uniprot
Match: D8LNG4_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG4_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 1.420e-30
Identity = 56/83 (67.47%), Postives = 70/83 (84.34%), Query Frame = 1
Query:    1 LRVTISWIDPASTTFSAKQLVHDLDLTVISPSGTVHRMWSTGEPDTYNVNERVIVGAADVQNGTWTIWVWANELSTYVQSYSL 249
            LRVT+SW+DP +TTFSA QLVHDLDL VISP+GT + MW++G  D+ NVNERVIV A DV+ GTW++W+WA+ L+T VQSYSL
Sbjct:  568 LRVTLSWLDPPATTFSAVQLVHDLDLVVISPNGTRYTMWASGVTDSSNVNERVIVDADDVETGTWSVWIWADNLTTDVQSYSL 650          
BLAST of mRNA_H-elongata_contig48971.12070.1 vs. uniprot
Match: A0A6H5K365_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K365_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 7.140e-28
Identity = 55/83 (66.27%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    1 LRVTISWIDPASTTFSAKQLVHDLDLTVISPSGTVHRMWSTGEPDTYNVNERVIVGAADVQNGTWTIWVWANELSTYVQSYSL 249
            LR T+SWIDP ST  SA QLVH+LDL V+SP GT +RMW +   D  NVNERVIV A DV  GTWT+WVWAN L T  QSYSL
Sbjct:  576 LRATLSWIDPPSTATSAVQLVHNLDLVVVSPDGTTYRMWGSETTDNRNVNERVIVDATDVVTGTWTVWVWANSLITDSQSYSL 658          
BLAST of mRNA_H-elongata_contig48971.12070.1 vs. uniprot
Match: D8LNG6_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG6_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 1.360e-27
Identity = 54/83 (65.06%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    1 LRVTISWIDPASTTFSAKQLVHDLDLTVISPSGTVHRMWSTGEPDTYNVNERVIVGAADVQNGTWTIWVWANELSTYVQSYSL 249
            LR T+SWIDP +T  SA QLVH+LDL V+SP GT +RMW +   D  NVNERVIV A DV  GTWT+WVWAN L T  QSYSL
Sbjct:  815 LRATLSWIDPPATATSAVQLVHNLDLVVVSPDGTTYRMWGSDTTDNRNVNERVIVDATDVVTGTWTVWVWANNLVTDSQSYSL 897          
BLAST of mRNA_H-elongata_contig48971.12070.1 vs. uniprot
Match: A0A6H5K229_9PHAE (Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K229_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 4.430e-24
Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 1
Query:    1 LRVTISWIDPASTTFSAKQLVHDLDLTVISPSGTVHRMWSTGEPDTYNVNERVIVGAADVQNGTWTIWVWANELSTYVQSYSL 249
            LR T+SWID  +T+ SA QLV+DLDL V+SPSGTV+RMW +   D  NVNERVIV A DV+ GTWT+ V++N L T  QSYSL
Sbjct:  851 LRATLSWIDYPATSTSAMQLVNDLDLVVVSPSGTVYRMWGSDVTDNRNVNERVIVDADDVETGTWTVLVYSNSLVTDSQSYSL 933          
BLAST of mRNA_H-elongata_contig48971.12070.1 vs. uniprot
Match: A0A2I6U1Q9_SACJA (Subtilisin n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1Q9_SACJA)

HSP 1 Score: 98.6 bits (244), Expect = 3.380e-22
Identity = 50/83 (60.24%), Postives = 62/83 (74.70%), Query Frame = 1
Query:    4 RVTISWIDPASTTFSAKQLVHDLDLTVISPSGTVHRMWST-GEPDTYNVNERVIVGAADVQNGTWTIWVWANELSTYVQSYSL 249
            R T+SWIDP +++ S  QLVHDLDL V+SPSG  H MW+T GE D+ NVNERVI+ AADV++GT+T+ V  N L T  Q YSL
Sbjct:  571 RATLSWIDPPASSTSGVQLVHDLDLEVVSPSGATHIMWATSGEVDSRNVNERVIIAAADVESGTYTVRVSTNHLLTDSQGYSL 653          
BLAST of mRNA_H-elongata_contig48971.12070.1 vs. uniprot
Match: A0A2I6U1S5_SACJA (Subtilisin n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1S5_SACJA)

HSP 1 Score: 95.1 bits (235), Expect = 5.680e-21
Identity = 48/83 (57.83%), Postives = 62/83 (74.70%), Query Frame = 1
Query:    4 RVTISWIDPASTTFSAKQLVHDLDLTVISPSGTVHRMWST-GEPDTYNVNERVIVGAADVQNGTWTIWVWANELSTYVQSYSL 249
            R T+SWIDP +++ S  QLVHDLDL V+SPSG  H MW+T GE D+ NVNERVI+ A +V++GT+T+ V  N L T  Q+YSL
Sbjct:  810 RATLSWIDPPASSTSGVQLVHDLDLEVVSPSGATHIMWATSGEVDSRNVNERVIIAAENVESGTYTVRVSTNHLLTDSQNYSL 892          
BLAST of mRNA_H-elongata_contig48971.12070.1 vs. uniprot
Match: A0A6H5JKA8_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKA8_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.550e-18
Identity = 48/99 (48.48%), Postives = 62/99 (62.63%), Query Frame = 1
Query:    1 LRVTISWIDPASTTFSAKQLVHDLDLTVISPSGTVHRMWSTGEPDTYNVNERVIVGAADV---------------QNGTWTIWVWANELS-TYVQSYSL 249
            LR T+SWIDP +TTFS+ QLVHDLDL+V SP+G  + MW  G  D+ N NERVIV A+++                +GTWT+ VW+  L+    QSYSL
Sbjct:  973 LRATLSWIDPPATTFSSVQLVHDLDLSVYSPTGLRYSMWRDGTVDSLNNNERVIVPASNILDQTSSDATTAEDGESDGTWTVRVWSKRLAGNETQSYSL 1071          
BLAST of mRNA_H-elongata_contig48971.12070.1 vs. uniprot
Match: A0A2I6U1R2_SACJA (Subtilisin (Fragment) n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1R2_SACJA)

HSP 1 Score: 85.9 bits (211), Expect = 9.980e-18
Identity = 41/66 (62.12%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    4 RVTISWIDPASTTFSAKQLVHDLDLTVISPSGTVHRMWST-GEPDTYNVNERVIVGAADVQNGTWT 198
            R T+SWIDP +++ S  QLVHDLDL V+SPSG  H MW+T GE D+ NVNERVI+ A DV++GT+T
Sbjct:  814 RATLSWIDPPASSASGVQLVHDLDLEVVSPSGATHIMWATSGEVDSRNVNERVIIAAEDVESGTYT 879          
BLAST of mRNA_H-elongata_contig48971.12070.1 vs. uniprot
Match: A0A6H5JDF7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDF7_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.740e-9
Identity = 34/79 (43.04%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    1 LRVTISWIDPASTTFSAKQLVHDLDLTVISPSGTVHRMWS--TGEPDTYNVN-----ERVIVGAADVQNGTWTIWVWAN 216
            +R T+ W+DP +TT S+ QLVHDLDL +  P GT+  M    T + D+ +++     ERV+V A+D+  GTWT+ V A+
Sbjct:   79 IRATLVWMDPPATTSSSVQLVHDLDLFLEGPDGTIWTMSGQCTSDQDSCSLDNRNNVERVVVPASDITAGTWTVTVSAS 157          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48971.12070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5JQT4_9PHAE7.850e-3167.47Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
D8LNG4_ECTSI1.420e-3067.47Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5K365_9PHAE7.140e-2866.27Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
D8LNG6_ECTSI1.360e-2765.06Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5K229_9PHAE4.430e-2462.65Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A... [more]
A0A2I6U1Q9_SACJA3.380e-2260.24Subtilisin n=1 Tax=Saccharina japonica TaxID=88149... [more]
A0A2I6U1S5_SACJA5.680e-2157.83Subtilisin n=1 Tax=Saccharina japonica TaxID=88149... [more]
A0A6H5JKA8_9PHAE1.550e-1848.48Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
A0A2I6U1R2_SACJA9.980e-1862.12Subtilisin (Fragment) n=1 Tax=Saccharina japonica ... [more]
A0A6H5JDF7_9PHAE1.740e-943.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48971contigH-elongata_contig48971:1342..1590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue2.6e-23
Seed eggNOG ortholog2880.D8LNG6
EggNOG free text desc.tripeptidyl-peptidase activity
EggNOG OGsCOG1404@1,KOG1114@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930805.7731547-CDS-H-elongata_contig48971:1341..15901622930805.7731547-CDS-H-elongata_contig48971:1341..1590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48971 1342..1590 +
1691679578.0612721-CDS-H-elongata_contig48971:1341..15901691679578.0612721-CDS-H-elongata_contig48971:1341..1590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48971 1342..1590 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48971.12070.1prot_H-elongata_contig48971.12070.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48971 1342..1590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48971.12070.1

>prot_H-elongata_contig48971.12070.1 ID=prot_H-elongata_contig48971.12070.1|Name=mRNA_H-elongata_contig48971.12070.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
LRVTISWIDPASTTFSAKQLVHDLDLTVISPSGTVHRMWSTGEPDTYNVN
ERVIVGAADVQNGTWTIWVWANELSTYVQSYSL
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mRNA from alignment at H-elongata_contig48971:1342..1590+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48971.12070.1 ID=mRNA_H-elongata_contig48971.12070.1|Name=mRNA_H-elongata_contig48971.12070.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=249bp|location=Sequence derived from alignment at H-elongata_contig48971:1342..1590+ (Himanthalia elongata Himel1 dioecious)
CTGCGCGTCACGATTTCGTGGATTGACCCTGCCTCAACAACATTCTCGGC GAAGCAGTTGGTACACGATTTGGATCTGACAGTTATTTCTCCAAGTGGAA CGGTGCACAGAATGTGGTCCACGGGTGAACCTGACACTTACAACGTCAAC GAAAGAGTTATTGTTGGTGCAGCAGATGTTCAAAACGGAACCTGGACAAT TTGGGTGTGGGCCAATGAACTTAGCACATATGTTCAAAGTTATTCGCTA
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Coding sequence (CDS) from alignment at H-elongata_contig48971:1342..1590+

>mRNA_H-elongata_contig48971.12070.1 ID=mRNA_H-elongata_contig48971.12070.1|Name=mRNA_H-elongata_contig48971.12070.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig48971:1342..1590+ (Himanthalia elongata Himel1 dioecious)
CTGCGCGTCACGATTTCGTGGATTGACCCTGCCTCAACAACATTCTCGGC
GAAGCAGTTGGTACACGATTTGGATCTGACAGTTATTTCTCCAAGTGGAA
CGGTGCACAGAATGTGGTCCACGGGTGAACCTGACACTTACAACGTCAAC
GAAAGAGTTATTGTTGGTGCAGCAGATGTTCAAAACGGAACCTGGACAAT
TTGGGTGTGGGCCAATGAACTTAGCACATATGTTCAAAGTTATTCGCTAC
TGCGCGTCACGATTTCGTGGATTGACCCTGCCTCAACAACATTCTCGGCG
AAGCAGTTGGTACACGATTTGGATCTGACAGTTATTTCTCCAAGTGGAAC
GGTGCACAGAATGTGGTCCACGGGTGAACCTGACACTTACAACGTCAACG
AAAGAGTTATTGTTGGTGCAGCAGATGTTCAAAACGGAACCTGGACAATT
TGGGTGTGGGCCAATGAACTTAGCACATATGTTCAAAGTTATTCGCTA
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