mRNA_H-elongata_contig48901.12059.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48901.12059.1
Unique NamemRNA_H-elongata_contig48901.12059.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48901.12059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48901contigH-elongata_contig48901:1508..2692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size703
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48901.12059.1prot_H-elongata_contig48901.12059.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48901 2227..2685 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930804.6232836-UTR-H-elongata_contig48901:1507..17301622930804.6232836-UTR-H-elongata_contig48901:1507..1730Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48901 1508..1730 -
1691679577.5606794-UTR-H-elongata_contig48901:1507..17301691679577.5606794-UTR-H-elongata_contig48901:1507..1730Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48901 1508..1730 -
1622930804.636029-UTR-H-elongata_contig48901:2212..22261622930804.636029-UTR-H-elongata_contig48901:2212..2226Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48901 2213..2226 -
1691679577.578298-UTR-H-elongata_contig48901:2212..22261691679577.578298-UTR-H-elongata_contig48901:2212..2226Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48901 2213..2226 -
1622930804.6651456-UTR-H-elongata_contig48901:2685..26921622930804.6651456-UTR-H-elongata_contig48901:2685..2692Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48901 2686..2692 -
1691679577.6002529-UTR-H-elongata_contig48901:2685..26921691679577.6002529-UTR-H-elongata_contig48901:2685..2692Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48901 2686..2692 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930804.6476576-CDS-H-elongata_contig48901:2226..26851622930804.6476576-CDS-H-elongata_contig48901:2226..2685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48901 2227..2685 -
1691679577.5891824-CDS-H-elongata_contig48901:2226..26851691679577.5891824-CDS-H-elongata_contig48901:2226..2685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48901 2227..2685 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48901.12059.1

>prot_H-elongata_contig48901.12059.1 ID=prot_H-elongata_contig48901.12059.1|Name=mRNA_H-elongata_contig48901.12059.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=153bp
MVVTARVATYRLRRYDDGRTYLYHLLSIPTDGSVGTSYTADGDGTPKYVR
VGGTRFLVKITEDGVNFEAVDVASSGGPHTLLESFPCEKCEETWDTICMS
VTEILCPYKSQAPTEALSKALDTLCGEMVSSGLCSDFSSAVLCQSQCIIS
EG*
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mRNA from alignment at H-elongata_contig48901:1508..2692-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48901.12059.1 ID=mRNA_H-elongata_contig48901.12059.1|Name=mRNA_H-elongata_contig48901.12059.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1185bp|location=Sequence derived from alignment at H-elongata_contig48901:1508..2692- (Himanthalia elongata Himel1 dioecious)
CAACCAAATGGTAGTTACCGCACGAGTTGCCACCTACAGGCTTCGTCGCT
ACGACGACGGGCGCACCTATCTCTACCATCTGCTCTCGATACCGACAGAC
GGTAGTGTCGGGACGTCATACACGGCAGATGGGGACGGTACCCCAAAATA
CGTTAGGGTTGGTGGTACAAGATTTCTGGTGAAGATTACCGAAGACGGTG
TGAACTTCGAAGCTGTCGACGTCGCCTCGTCGGGGGGACCTCACACACTA
CTGGAGTCGTTCCCTTGCGAAAAATGCGAGGAAACCTGGGACACGATATG
CATGTCTGTTACAGAAATTCTCTGCCCATACAAAAGTCAAGCACCCACTG
AAGCTTTATCTAAAGCGCTTGACACCCTATGCGGCGAGATGGTATCATCA
GGCCTTTGCTCCGATTTTAGCAGCGCTGTTCTTTGCCAAAGTCAGTGCAT
CATCAGTGAGGGATAAATTTGATACCGAAGGTAAACATTTGTGAAGGCAG
GGTAGAATACTGGTGAACAATAAGTGATACATCGCCCAATATGGTACACA
ATCTTCCCCCGTGTCGTAGCATACCCGTGCTGGCTCAACCTCGTCATCGG
ATAGCAAATACTTGCGAACGACGGTAGTTAGTCGATCGGGCGATACACGT
ATAGTTCACCCTCATTATCTGCAGTACACATAGTATACATTGCCCGTGAA
GTAGAGCGCCTGGTTGTTTCGGCCACTCTTTATGACATGGCGGGTCCCCC
ATGCCGACGAAGCTTAGTTTTTGTGTCTTTGCCCCCCCCCCCCGCCGCCT
CTCATAACCGAGGGCCCCTGGATGGGGTTTGGATATAGGTGGCGTTCTTT
GAATCGGGTGGATGTACCGCCTCCGCGAACGGCAAAGTAATAACCATCTA
TCCCCGCGCTATATCGTTGCGATTTGGTGCCCGTCGTGTCCCTTATGTGA
ACGGTGTAAAAGACAGGAAGGCCCTTGTTTCCGCTTCGACGATTCACTGA
CGACGTCTGCGGAGTCCTCGATATAGGTCGTCATCGAAATAATAACTTCT
ACGCCCCTGCATACGTGGCAGTATGGGGGGGGTCAACGAAGGGGTCGGGA
AGTCCCATTGATCGCCATAGTTGATTAGTCATGAGTGGCACGAACTTATC
CTCCAGACGTTTTTTTGGGGGGGGGTCATATTACC
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Coding sequence (CDS) from alignment at H-elongata_contig48901:1508..2692-

>mRNA_H-elongata_contig48901.12059.1 ID=mRNA_H-elongata_contig48901.12059.1|Name=mRNA_H-elongata_contig48901.12059.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=918bp|location=Sequence derived from alignment at H-elongata_contig48901:1508..2692- (Himanthalia elongata Himel1 dioecious)
ATGGTAGTTACCGCACGAGTTGCCACCTACAGGCTTCGTCGCTACGACGA
CGGGCGCACCTATCTCTACCATCTGCTCTCGATACCGACAGACGGTAGTG
TCGGGACGTCATACACGGCAGATGGGGACGGTACCCCAAAATACGTTAGG
GTTGGTGGTACAAGATTTCTGGTGAAGATTACCGAAGACGGTGTGAACTT
CGAAGCTGTCGACGTCGCCTCGTCGGGGGGACCTCACACACTACTGGAGT
CGTTCCCTTGCGAAAAATGCGAGGAAACCTGGGACACGATATGCATGTCT
GTTACAGAAATTCTCTGCCCATACAAAAGTCAAGCACCCACTGAAGCTTT
ATCTAAAGCGCTTGACACCCTATGCGGCGAGATGGTATCATCAGGCCTTT
GCTCCGATTTTAGCAGCGCTGTTCTTTGCCAAAGTCAGTGCATCATCAGT
GAGGGATAAATGGTAGTTACCGCACGAGTTGCCACCTACAGGCTTCGTCG
CTACGACGACGGGCGCACCTATCTCTACCATCTGCTCTCGATACCGACAG
ACGGTAGTGTCGGGACGTCATACACGGCAGATGGGGACGGTACCCCAAAA
TACGTTAGGGTTGGTGGTACAAGATTTCTGGTGAAGATTACCGAAGACGG
TGTGAACTTCGAAGCTGTCGACGTCGCCTCGTCGGGGGGACCTCACACAC
TACTGGAGTCGTTCCCTTGCGAAAAATGCGAGGAAACCTGGGACACGATA
TGCATGTCTGTTACAGAAATTCTCTGCCCATACAAAAGTCAAGCACCCAC
TGAAGCTTTATCTAAAGCGCTTGACACCCTATGCGGCGAGATGGTATCAT
CAGGCCTTTGCTCCGATTTTAGCAGCGCTGTTCTTTGCCAAAGTCAGTGC
ATCATCAGTGAGGGATAA
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