mRNA_H-elongata_contig48846.12056.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48846.12056.1
Unique NamemRNA_H-elongata_contig48846.12056.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig48846.12056.1 vs. uniprot
Match: D8LFR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFR0_ECTSI)

HSP 1 Score: 300 bits (767), Expect = 2.900e-96
Identity = 142/253 (56.13%), Postives = 183/253 (72.33%), Query Frame = 1 
Query:    1 GYLIFVNGREQLGCNRHLVADGIFLAKTLNRTLVEFPVRDSRISGADSKLGLGAYWDLDHLCRSHRIISLVAFRALIFAGAIDAHEFVTMAPISNEANPMQALETVDDVLAVFQGYVDRQVIVLTNQWKSGLDRGYASFLRPNPFYSRIARRLIDEQEGWEENTFLAVQWRTETATGNLTTCYHHIREKVDVHLRRKDWSRNQVFFNTDLVDRASATYAKKNSEMKRETLRLIREDFPVANNNSVFTFLAEVE 759
            GY+IFVNGREQLG NR+L++DG+++AKTLNRTLVEFPV ++RIS ADS LG GAYWDLD LC+ HRI+ L AFR+LI AG +D  +F+ M P+   A+PM  L T  DV   F GY D QVIV+  QWKS + R     +RP PFY  +ARRLID+Q+GWE   FLAVQWRTET+TGNLT CY H+RE V+ +  ++ + R QVFFNTDL+  +S TY+ +   +K + L +I ED+P A NN+V  +L  +E
Sbjct:  146 GYIIFVNGREQLGSNRYLLSDGLYIAKTLNRTLVEFPVANARISRADSDLGFGAYWDLDSLCQYHRILGLGAFRSLIEAGRLDVEKFLVMTPVRPSADPMSTLRTAKDVREAFGGYEDSQVIVMNGQWKSNIRRYPLKLIRPLPFYENLARRLIDQQQGWENEAFLAVQWRTETSTGNLTACYGHVREAVERYREQEGFDRGQVFFNTDLMPHSSGTYSSQQLAVKLQVLAMIDEDYPSAMNNTVTAYLDNLE 398
[Close]
BLAST of mRNA_H-elongata_contig48846.12056.1 vs. uniprot
Match: A0A6H5KP62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP62_9PHAE)

HSP 1 Score: 298 bits (763), Expect = 1.130e-95
Identity = 141/253 (55.73%), Postives = 184/253 (72.73%), Query Frame = 1 
Query:    1 GYLIFVNGREQLGCNRHLVADGIFLAKTLNRTLVEFPVRDSRISGADSKLGLGAYWDLDHLCRSHRIISLVAFRALIFAGAIDAHEFVTMAPISNEANPMQALETVDDVLAVFQGYVDRQVIVLTNQWKSGLDRGYASFLRPNPFYSRIARRLIDEQEGWEENTFLAVQWRTETATGNLTTCYHHIREKVDVHLRRKDWSRNQVFFNTDLVDRASATYAKKNSEMKRETLRLIREDFPVANNNSVFTFLAEVE 759
            GYLIFVNGREQLG NR+L++DG+++AKTLNRTLVEFPV ++RIS ADS LG GAYW LD LCR HRI+ L AFR+LI AG +D  +F+ M P+   A+PM  L+T  DV   F GY D QVIV+ +QWKS + R     ++P PFY  +ARRLID+Q+GWE   FLAVQWRTET+TGNLT CY H+RE V+ +  ++ + R QVFFNTDL   +S TY+ +   +K++ L +I ED+P A N++V  +L  +E
Sbjct:  144 GYLIFVNGREQLGSNRYLLSDGLYIAKTLNRTLVEFPVANARISRADSDLGFGAYWGLDSLCRYHRILGLGAFRSLIEAGRLDVEKFLVMTPVRPSADPMSTLKTAKDVREAFGGYEDSQVIVMNDQWKSNIRREPLKLIKPLPFYENLARRLIDQQQGWENEAFLAVQWRTETSTGNLTACYGHVREAVERYREQEGFDRGQVFFNTDLTPHSSGTYSSQQLAVKQQVLAMIDEDYPSAMNSTVTAYLDNLE 396
[Close]
BLAST of mRNA_H-elongata_contig48846.12056.1 vs. uniprot
Match: A0A6H5JCA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCA8_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 9.510e-63
Identity = 109/254 (42.91%), Postives = 155/254 (61.02%), Query Frame = 1 
Query:    1 GYLIFVNGREQLGCNRHLVADGIFLAKTLNRTLVEFPVRDSRISGAD-SKLGLGAYWDLDHLCRSHRIISLVAFRALIFAGAIDAHEFVTMAPISNEANPMQALETVDDVLAVFQGYVDRQVIVLTNQWKSGLDRGYASFLRPNPFYSRIARRLIDEQEGWEENTFLAVQWRTETATGNLTTCYHHIREKVDVHLRRKDWSRNQVFFNTDLVDRASATYAKKNSEMKRETLRLIREDFPVANNNSVFTFLAEVE 759
            GY+++VNGREQLG N+ LV+DGIF+AK L RT VE+PV+D+R++  + + +GLGAYWDL  LC  HRI+ L +FR ++  G I    F T+   S+E     A +  + ++ +F+ Y   QVIV+ + WKSG +R    FLRPNPF+  I R L++ Q+ WE   F+AVQWRTE + GNLT CY  ++  V+       +  +QV FNTDL  + S TY           L LI  D+P A +N +  F  E++
Sbjct:  239 GYVVYVNGREQLGGNKFLVSDGIFMAKALGRTFVEYPVKDARVAKLEEASIGLGAYWDLSELCMYHRILDLNSFRNMMVDGRIPPEAFTTIRSDSHEVLLYHATDE-EHMVDMFKDYEKYQVIVMESTWKSGNERDALQFLRPNPFFVGIVRMLLEAQKDWETGEFVAVQWRTELSNGNLTECYQEVKALVEEQRVALGYGTHQVLFNTDLYGKTSGTYKASAQAHGAAVLDLINHDYPHALHNELHQFFTEID 491
[Close]
BLAST of mRNA_H-elongata_contig48846.12056.1 vs. uniprot
Match: D8LN55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN55_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 2.680e-62
Identity = 107/254 (42.13%), Postives = 153/254 (60.24%), Query Frame = 1 
Query:    1 GYLIFVNGREQLGCNRHLVADGIFLAKTLNRTLVEFPVRDSRISGA-DSKLGLGAYWDLDHLCRSHRIISLVAFRALIFAGAIDAHEFVTMAPISNEANPMQALETVDDVLAVFQGYVDRQVIVLTNQWKSGLDRGYASFLRPNPFYSRIARRLIDEQEGWEENTFLAVQWRTETATGNLTTCYHHIREKVDVHLRRKDWSRNQVFFNTDLVDRASATYAKKNSEMKRETLRLIREDFPVANNNSVFTFLAEVE 759
            GY+++VNGREQLG N+ LV DGIF+AK L RT VE+PV+D+R++   D+ +GLGAYWDL  LC  HRI+ L +FR ++  G I    F T+   ++E     A +  + ++ +F+     QVI + + WKSG +R    FLRPNPF+  I R L++ Q+ WE   F+AVQWRTE A G+LT CY  ++  V+       +  +QV FNTDL  + S TY           L LI +D+P A +N +  F  E++
Sbjct:  114 GYVVYVNGREQLGGNKFLVTDGIFMAKALGRTFVEYPVKDARVAKLEDASIGLGAYWDLSELCMYHRILDLTSFRNMMADGRIPPEAFTTIRSDTHEVLLRHATDE-EHIVDMFKDSDKYQVIAMESTWKSGKEREALQFLRPNPFFVGIVRMLLEAQKDWETGEFVAVQWRTELANGDLTECYKEVKALVEEQRVALGYGTHQVLFNTDLYGKTSGTYKASAQAHGAAVLDLINDDYPQALHNELHHFFTEID 366
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48846.12056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LFR0_ECTSI2.900e-9656.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KP62_9PHAE1.130e-9555.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCA8_9PHAE9.510e-6342.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN55_ECTSI2.680e-6242.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48846contigH-elongata_contig48846:91..2563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_001240.1
Exons6
Model size759
Cds size759
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48846.12056.1prot_H-elongata_contig48846.12056.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48846 91..2563 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930804.3857586-CDS-H-elongata_contig48846:90..1161622930804.3857586-CDS-H-elongata_contig48846:90..116Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48846 91..116 +
1691679577.4776516-CDS-H-elongata_contig48846:90..1161691679577.4776516-CDS-H-elongata_contig48846:90..116Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48846 91..116 +
1622930804.4094-CDS-H-elongata_contig48846:499..6621622930804.4094-CDS-H-elongata_contig48846:499..662Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48846 500..662 +
1691679577.4868455-CDS-H-elongata_contig48846:499..6621691679577.4868455-CDS-H-elongata_contig48846:499..662Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48846 500..662 +
1622930804.426785-CDS-H-elongata_contig48846:1169..13401622930804.426785-CDS-H-elongata_contig48846:1169..1340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48846 1170..1340 +
1691679577.4989078-CDS-H-elongata_contig48846:1169..13401691679577.4989078-CDS-H-elongata_contig48846:1169..1340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48846 1170..1340 +
1622930804.445316-CDS-H-elongata_contig48846:1493..16071622930804.445316-CDS-H-elongata_contig48846:1493..1607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48846 1494..1607 +
1691679577.5076091-CDS-H-elongata_contig48846:1493..16071691679577.5076091-CDS-H-elongata_contig48846:1493..1607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48846 1494..1607 +
1622930804.4667645-CDS-H-elongata_contig48846:2065..22541622930804.4667645-CDS-H-elongata_contig48846:2065..2254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48846 2066..2254 +
1691679577.516802-CDS-H-elongata_contig48846:2065..22541691679577.516802-CDS-H-elongata_contig48846:2065..2254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48846 2066..2254 +
1622930804.4847968-CDS-H-elongata_contig48846:2467..25631622930804.4847968-CDS-H-elongata_contig48846:2467..2563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48846 2468..2563 +
1691679577.5270615-CDS-H-elongata_contig48846:2467..25631691679577.5270615-CDS-H-elongata_contig48846:2467..2563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48846 2468..2563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48846.12056.1

>prot_H-elongata_contig48846.12056.1 ID=prot_H-elongata_contig48846.12056.1|Name=mRNA_H-elongata_contig48846.12056.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=253bp
GYLIFVNGREQLGCNRHLVADGIFLAKTLNRTLVEFPVRDSRISGADSKL
GLGAYWDLDHLCRSHRIISLVAFRALIFAGAIDAHEFVTMAPISNEANPM
QALETVDDVLAVFQGYVDRQVIVLTNQWKSGLDRGYASFLRPNPFYSRIA
RRLIDEQEGWEENTFLAVQWRTETATGNLTTCYHHIREKVDVHLRRKDWS
RNQVFFNTDLVDRASATYAKKNSEMKRETLRLIREDFPVANNNSVFTFLA
EVE
back to top

mRNA from alignment at H-elongata_contig48846:91..2563+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48846.12056.1 ID=mRNA_H-elongata_contig48846.12056.1|Name=mRNA_H-elongata_contig48846.12056.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2473bp|location=Sequence derived from alignment at H-elongata_contig48846:91..2563+ (Himanthalia elongata Himel1 dioecious)
GGCTACCTCATCTTCGTTAACGGGAGGTGAGAGAGAGAAATAAGTTGAGT
CAACCACATTGTGTTGACATGTAATTGGCGTATGAAGCAAGTGACTGATA
CGGCTACTGCACTGGATGGTATAAGGGTACAGTATATTTTCCGATAAGTT
TGCTGTACCATGCCGTGTACAGGTCTTTTGACGGGTATATATGTTATATA
TAATACGAGGAGTGATGGAAATCACGCGTGGGAGGGGGCGCCCAAGTTCA
TTGGCAGGTTTTCGTTTGAGCATTTTTGCACTCTTAGGCACGTGCAGTTA
GTTTGCCTAGTAAAGTCTCGAAATGAAAAGCGCGACAAAATGTCCGCTTG
ACATCCCGGGGTGCGGCTTCTTTGAAATGTTCTCGATGCACACGACGTCA
CCACGACAGGGAGCAGCTGGGGTGCAATCGACACCTCGTAGCGGATGGCA
TCTTCTTAGCAAAGACACTCAACCGCACCCTCGTCGAATTCCCGGTTAGA
GATTCGCGGATCTCCGGAGCTGATTCGAAGCTAGGTCTTGGCGCGTACTG
GGACCTTGACCATTTATGCCGGGTGAGCAGAAAACATTGAGGCTGCGAGC
CAAGTAATGCTTCCTGTCCTAGCGAGCTAGGTTAAACGCTGTGTGATTTA
GAATCTGAGGCATTCCGTAGCCTTCATTTTCCTCGCGGAAATGAGAGCAC
TCCTCCTTGTCCCTTTCGTGCAAAGTCCCAAACGCTTTGGCTGCCAGTAT
CAAGCCAAGACGATTTGCGCTAAGTCACTAGCTGTTATCGATCTCGACCC
GAGCTCCCCGGCAACCCCTCGGCGATGGTAGTGCGTGACACCCCCCGGAA
AGTGCCCCACACTAGTCGTATTTAAAACACGAAAGTTAGCACAGCAGCGT
AAATAGTACGGTGGTATCTATGGTACTGCATAGAGAAGTTTCGAAAGCGC
GTTTCTCTTGTCCCGCTCTCTCGCCGCTCTCCCGAAGAGCGGTCTATCAA
CCGCAATAGCCGCAAATATATGTTGCGCTTTAATGACCAAGTCAACCTGA
CGACTGATCTCTCTTCGCATCGGGAAAAGTCGCATCGGATTATTTCCCTG
GTGGCGTTTCGCGCTTTAATCTTCGCCGGAGCTATCGACGCGCATGAGTT
TGTCACGATGGCACCCATCAGCAATGAGGCAAATCCGATGCAAGCGCTGG
AAACCGTGGATGACGTCCTGGCTGTTTTTCAGGGCTACGTAGATCGACAG
GTGCAATTTTTGTCACGACGTGGGGGGCATAACACTTTGAAGATGGCCTG
CTTGTGTAACAGACTCGTCCTAATTGCCAAATATTGCAATGTCGGGGGAG
CCTCCTATGTGTTACGAATATATGAGCTTTTATCCTATTTTAAAACTCGC
TAGGTTATCGTGTTGACGAACCAATGGAAGAGCGGTTTGGATCGAGGATA
CGCGAGTTTTCTTCGACCAAACCCGTTCTATTCGAGGATAGCGCGCCGAT
TAATCGACGAACAAGAGGTAAGATCGATGTCGATGAAAATGGTGAACTGA
CTACCTGTTGGATTGAGAGTATCCCCCCCCACACACACACACACTTCTTT
CAAAATAGGCGACAGAGTTAGCGATTCCGCAGCGTGGCCCAAGTTCCTGC
GTTGGACCTAGGGACTCACGATGTCAGCTACGACGTACATCATATTCAGG
CGAAAGTAGGCCTTAACAAATGCGTGGAATGTCATCCAACGGCACGCGAG
ACACGAATGGAGGCTATTTCGCGCAATCGATACCGCAGAGCGCAGAATGT
TCGGAGGGTTGGAATGAGTTCAGTTTTTTTTTATAAGAGTAATACGGTAA
TACCCGGAGGAAAACTGCGGCTTCGCTGCGGGTATGCACTGACATAAATC
AAAATACCAAGCCTGTTGCGTTGTGTGTCAATGTAACGAATATTTCATCC
GCTTTATTATCCGTACGATTCACAGGGGTGGGAAGAGAACACTTTCCTGG
CGGTACAATGGCGGACTGAGACCGCGACAGGAAATCTGACGACGTGCTAC
CACCACATTCGGGAGAAGGTGGATGTGCATCTTAGGCGCAAAGACTGGAG
CCGGAATCAAGTGTTCTTCAACACAGACTTGGTGGATAGAGCTTCAGCCA
CCTACGCCAAGAAGGTGGCCGATCGCCGTTGAGATTTACTTGCCGTTATT
GCGGACAATTGGAAAATCGAGCTAGCGTTGAGCAATTGATAGTGTTATAT
AGCGTGATTTCGTGCTTGGAGGTCGACCGCGGTTTCAAGCTCATCGATCA
GTGATATTCCAGCCTCGTCCAGAGATCGTACATTTGCGACATCTAACGAA
CTCGTCCGTTGCGCGAAACGTTCGAAGAACTCTGAGATGAAACGTGAGAC
ATTGAGGCTTATTCGAGAAGATTTCCCTGTGGCCAACAACAACAGCGTCT
TCACTTTCTTGGCGGAAGTTGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig48846:91..2563+

>mRNA_H-elongata_contig48846.12056.1 ID=mRNA_H-elongata_contig48846.12056.1|Name=mRNA_H-elongata_contig48846.12056.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1518bp|location=Sequence derived from alignment at H-elongata_contig48846:91..2563+ (Himanthalia elongata Himel1 dioecious)
GGCTACCTCATCTTCGTTAACGGGAGGGCTACCTCATCTTCGTTAACGGG
AGGGAGCAGCTGGGGTGCAATCGACACCTCGTAGCGGATGGCATCTTCTT
AGCAAAGACACTCAACCGCACCCTCGTCGAATTCCCGGTTAGAGATTCGC
GGATCTCCGGAGCTGATTCGAAGCTAGGTCTTGGCGCGTACTGGGACCTT
GACCATTTATGCCGGGGAGCAGCTGGGGTGCAATCGACACCTCGTAGCGG
ATGGCATCTTCTTAGCAAAGACACTCAACCGCACCCTCGTCGAATTCCCG
GTTAGAGATTCGCGGATCTCCGGAGCTGATTCGAAGCTAGGTCTTGGCGC
GTACTGGGACCTTGACCATTTATGCCGGTCGCATCGGATTATTTCCCTGG
TGGCGTTTCGCGCTTTAATCTTCGCCGGAGCTATCGACGCGCATGAGTTT
GTCACGATGGCACCCATCAGCAATGAGGCAAATCCGATGCAAGCGCTGGA
AACCGTGGATGACGTCCTGGCTGTTTTTCAGGGCTACGTAGATCGACAGT
CGCATCGGATTATTTCCCTGGTGGCGTTTCGCGCTTTAATCTTCGCCGGA
GCTATCGACGCGCATGAGTTTGTCACGATGGCACCCATCAGCAATGAGGC
AAATCCGATGCAAGCGCTGGAAACCGTGGATGACGTCCTGGCTGTTTTTC
AGGGCTACGTAGATCGACAGGTTATCGTGTTGACGAACCAATGGAAGAGC
GGTTTGGATCGAGGATACGCGAGTTTTCTTCGACCAAACCCGTTCTATTC
GAGGATAGCGCGCCGATTAATCGACGAACAAGAGGTTATCGTGTTGACGA
ACCAATGGAAGAGCGGTTTGGATCGAGGATACGCGAGTTTTCTTCGACCA
AACCCGTTCTATTCGAGGATAGCGCGCCGATTAATCGACGAACAAGAGGG
GTGGGAAGAGAACACTTTCCTGGCGGTACAATGGCGGACTGAGACCGCGA
CAGGAAATCTGACGACGTGCTACCACCACATTCGGGAGAAGGTGGATGTG
CATCTTAGGCGCAAAGACTGGAGCCGGAATCAAGTGTTCTTCAACACAGA
CTTGGTGGATAGAGCTTCAGCCACCTACGCCAAGAAGGGGTGGGAAGAGA
ACACTTTCCTGGCGGTACAATGGCGGACTGAGACCGCGACAGGAAATCTG
ACGACGTGCTACCACCACATTCGGGAGAAGGTGGATGTGCATCTTAGGCG
CAAAGACTGGAGCCGGAATCAAGTGTTCTTCAACACAGACTTGGTGGATA
GAGCTTCAGCCACCTACGCCAAGAAGAACTCTGAGATGAAACGTGAGACA
TTGAGGCTTATTCGAGAAGATTTCCCTGTGGCCAACAACAACAGCGTCTT
CACTTTCTTGGCGGAAGTTGAGAACTCTGAGATGAAACGTGAGACATTGA
GGCTTATTCGAGAAGATTTCCCTGTGGCCAACAACAACAGCGTCTTCACT
TTCTTGGCGGAAGTTGAG
back to top