mRNA_H-elongata_contig48829.12053.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48829.12053.1
Unique NamemRNA_H-elongata_contig48829.12053.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig48829.12053.1 vs. uniprot
Match: D8LSY1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSY1_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 4.930e-77
Identity = 136/267 (50.94%), Postives = 171/267 (64.04%), Query Frame = 1 
Query:    1 DQRYVGPVAALSDTLAKLPKLKVLDMSRCTLLGRAGHRYRGLIALGRAFAYQTKSCLTHLRISNNNLHSEAALILGGWCPAMRRLRYFDVSDRVGFAALCGSLANMLHLRTLLMRDVGIDDRGAEDLTAYVSSSVRLQTLDISKNQMQVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPHAANLTELDLSSNGLTVG-------------VKDSLVSAALASSTIEVYGLSGNDIPPADAEVIQEYASANVELRAVAD 762
            +QRYVGP+ AL+DTL  L +LKVLD+S CTL+G AG+RY GL ALG  FA   K  LTHLRIS N+LHSEAALI+GGW P++ +LRY D+S R GF +LCG+    LHLRTLL+RDVG+DD  AE + ++++ S RL+ LD+S NQ+ V                                     +PHAA+L ELD+SSNGLT G             VK+  + AALAS +IE + LSGNDIPP+D E +Q YAS+NVELRAVAD
Sbjct:   26 EQRYVGPLVALADTLTSLSRLKVLDLSNCTLIGLAGNRYHGLNALGNTFASGKK--LTHLRISGNSLHSEAALIVGGWLPSLPKLRYLDLSSRSGFDSLCGAFRTSLHLRTLLLRDVGMDDGEAEGVASFLALSARLEKLDLSDNQLHVRGARYLAGALRSNGSLSSLLLGHNRIGNEGALLLAASVPHAASLVELDVSSNGLTGGXXXXXXXXYTKKSVKEGFIEAALASYSIETFRLSGNDIPPSDVEEMQGYASSNVELRAVAD 290
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BLAST of mRNA_H-elongata_contig48829.12053.1 vs. uniprot
Match: A0A6H5LDS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDS7_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 5.730e-55
Identity = 111/254 (43.70%), Postives = 139/254 (54.72%), Query Frame = 1 
Query:    1 DQRYVGPVAALSDTLAKLPKLKVLDMSRCTLLGRAGHRYRGLIALGRAFAYQTKSCLTHLRISNNNLHSEAALILGGWCPAMRRLRYFDVSDRVGFAALCGSLANMLHLRTLLMRDVGIDDRGAEDLTAYVSSSVRLQTLDISKNQMQVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPHAANLTELDLSSNGLTVGVKDSLVSAALASSTIEVYGLSGNDIPPADAEVIQEYASANVELRAVAD 762
            +QRYVGP+ AL+DTL  L +LKVLD+S CTL+G +G+RY GL ALG   A   K  LTHLRIS N LHSEAALI+GGW P++ +LRY D+S R GF  LCG+    LHLRTLL+RDVG+DD  AE + ++++ SVRL+ LD+S+NQ +                                                                             LSGNDIPP+D E +QEYAS+NVELRAVAD
Sbjct:   92 EQRYVGPLVALADTLTSLSRLKVLDLSNCTLIGLSGNRYHGLNALGNTLASGKK--LTHLRISGNRLHSEAALIVGGWLPSLPKLRYLDLSSRSGFDPLCGAFRTSLHLRTLLLRDVGMDDLEAEGVASFLALSVRLEKLDLSENQER-----------------------------------------------------------------------------LSGNDIPPSDVEEMQEYASSNVELRAVAD 266
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48829.12053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSY1_ECTSI4.930e-7750.94Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5LDS7_9PHAE5.730e-5543.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48829contigH-elongata_contig48829:1303..3809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score60.8
Seed ortholog evalue1e-06
Seed eggNOG ortholog144197.XP_008277276.1
Preferred nameLRRC31
EggNOG free text desc.Leucine rich repeat containing 31
EggNOG OGs39RX0@33154,3BHWA@33208,3D260@33213,484XJ@7711,495GJ@7742,49R9U@7898,KOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-26_001840.1
Exons6
Model size762
Cds size762
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48829.12053.1prot_H-elongata_contig48829.12053.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48829 1303..3809 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930804.0076575-CDS-H-elongata_contig48829:1302..14841622930804.0076575-CDS-H-elongata_contig48829:1302..1484Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48829 1303..1484 +
1691679577.2824123-CDS-H-elongata_contig48829:1302..14841691679577.2824123-CDS-H-elongata_contig48829:1302..1484Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48829 1303..1484 +
1622930804.0232992-CDS-H-elongata_contig48829:1779..18721622930804.0232992-CDS-H-elongata_contig48829:1779..1872Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48829 1780..1872 +
1691679577.293066-CDS-H-elongata_contig48829:1779..18721691679577.293066-CDS-H-elongata_contig48829:1779..1872Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48829 1780..1872 +
1622930804.040716-CDS-H-elongata_contig48829:2129..22921622930804.040716-CDS-H-elongata_contig48829:2129..2292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48829 2130..2292 +
1691679577.30175-CDS-H-elongata_contig48829:2129..22921691679577.30175-CDS-H-elongata_contig48829:2129..2292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48829 2130..2292 +
1622930804.0576015-CDS-H-elongata_contig48829:2843..29951622930804.0576015-CDS-H-elongata_contig48829:2843..2995Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48829 2844..2995 +
1691679577.3103833-CDS-H-elongata_contig48829:2843..29951691679577.3103833-CDS-H-elongata_contig48829:2843..2995Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48829 2844..2995 +
1622930804.0793853-CDS-H-elongata_contig48829:3298..33821622930804.0793853-CDS-H-elongata_contig48829:3298..3382Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48829 3299..3382 +
1691679577.3190544-CDS-H-elongata_contig48829:3298..33821691679577.3190544-CDS-H-elongata_contig48829:3298..3382Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48829 3299..3382 +
1622930804.0935068-CDS-H-elongata_contig48829:3721..38091622930804.0935068-CDS-H-elongata_contig48829:3721..3809Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48829 3722..3809 +
1691679577.327621-CDS-H-elongata_contig48829:3721..38091691679577.327621-CDS-H-elongata_contig48829:3721..3809Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48829 3722..3809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48829.12053.1

>prot_H-elongata_contig48829.12053.1 ID=prot_H-elongata_contig48829.12053.1|Name=mRNA_H-elongata_contig48829.12053.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp
DQRYVGPVAALSDTLAKLPKLKVLDMSRCTLLGRAGHRYRGLIALGRAFA
YQTKSCLTHLRISNNNLHSEAALILGGWCPAMRRLRYFDVSDRVGFAALC
GSLANMLHLRTLLMRDVGIDDRGAEDLTAYVSSSVRLQTLDISKNQMQVG
GARHLAKGMRSNGTLRTLFLGRNQIGDKGGRLLANSIPHAANLTELDLSS
NGLTVGVKDSLVSAALASSTIEVYGLSGNDIPPADAEVIQEYASANVELR
AVAD
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mRNA from alignment at H-elongata_contig48829:1303..3809+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48829.12053.1 ID=mRNA_H-elongata_contig48829.12053.1|Name=mRNA_H-elongata_contig48829.12053.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2507bp|location=Sequence derived from alignment at H-elongata_contig48829:1303..3809+ (Himanthalia elongata Himel1 dioecious)
GATCAGCGATATGTGGGTCCTGTGGCAGCTCTGTCGGACACGCTAGCTAA
GCTCCCGAAGCTCAAGGTGTTAGACATGTCACGTTGCACCCTCCTTGGCC
GTGCGGGGCACCGGTACCGAGGATTGATTGCGTTGGGCAGGGCCTTCGCC
TACCAAACTAAAAGCTGTCTAACACACCTCAGGTGCGCCTTTAATCCAAC
AAAAGACGGCACGATCAATATCATGCGTGTGCGGTCAGCGGCGTGGACCT
CTTGATCTGGTCGAAAAGCACAGACGGACGAAGAGACATACGCGCGCGCC
AGAGGACTTTGGAGGTTGGTATTTTATTTTTTAAAATCGATGAAATAAGA
GGGCGCCGGACGGGGAGAGATCCCAGCTAATCCTGCAAGATTCTTGGCTC
GTTATTTGCGGTCCTCATTCTCAATACCCACCACGGCCTGCGGAACACGT
TTTGTTTCTACGCGACCTGTATCACAGGATTTCCAACAACAACCTACATA
GCGAGGCAGCTCTGATTCTGGGGGGCTGGTGCCCAGCAATGCGCCGACTG
AGATATTTTGATGTTTCCGAGTGAGAGGACTGCTGGTGAAGGTGGTGGCG
AGTAGGGCGAGGCTGTATCAGAATTATCCTAGTCATAACACAAAAAACAG
CAGCGCAACGTTAAACGAAAATTTCGTCTCTCAGTCGATACCTACCACCT
TTACACACGCACGCTCGCATGAGACAGCACAAGTGCATGATTCCTCAAAT
GAACACCCACTCCTCGTTCGCGTTTTGGGTTCCCCCGCAAGGAACCCGCT
CGCTCGCGATCCTCTTGGATTGACCAGTCGCGTGGGATTCGCCGCTTTGT
GTGGCAGCCTCGCTAATATGCTTCACTTAAGGACGTTGCTCATGAGAGAC
GTTGGGATCGACGACCGTGGGGCCGAGGATCTGACGGCATACGTTTCCTC
TTCGGTGCGCCTTCAAACTCTTGATATCTCCAAAAATCAGGTTCGTTCTC
ACAGTCAAGCCCCGCTTGAACTCACCACGCGGTCTCACCTCCACCTCTGC
GGGGATTTATTTTGTCGTTTCCTTTTTTGTGCGCCATTATTGTGCACAAT
TATTGTCGTTTCCTTTTTTGTATTGGAGAGTACCTTGAACGTTTTTCTCC
TCTTTCCGGATGGTGTGTTGTTTCTACCTTGTGACCACGGGCTGGATTTT
GACATTAGCTTATTTGAGAATTCAATCAAAATTAAAATTAAAATTAAATA
TTTCCGTCGAAGAAAACGTCAACTCGATTCGATTCGATCGGAGAGGCTGC
CCTGAAAGGAGAATCCGCATCCAAGGCTATTTGCGACTGAACTCGGGAGC
TTGTTGAGCTGTCGATCTAGTTTGGCGGGAAGCTCTTGTATTATAACATC
TGGTAAGTATAAACATATTACAACAGCTCGTAGCCCCTCTGAGAAAATAC
ATGCCGAGATCCCTGCTTCCTTTTTCGACGAGCGACCCCACCTTACCCCA
ATCGCCCCCCCTATACACACAAAACGCCTCATTTTCTCTAGATGCAAGTC
GGGGGCGCCAGGCACCTGGCAAAAGGCATGCGCTCAAACGGAACCCTTAG
GACCCTCTTCTTGGGGCGGAACCAGATAGGAGACAAGGGAGGGCGATTGC
TGGCGAACAGCATTCCGCATGCTGCGAACCTTACCGAGTTAGAGTAAGCG
CGCACACCCTTTGTGGTCGGCATAAATTGTGCCAATCAAAATATTATGAG
GGCGACGGTCTCTGGAGACGGGTAACATCTGAGAGGCGAGGGAAAGGGAG
GATTCCCCACGTACGAAAGACGATTATCTTTCCTCTCTTCTCGCGGTTTC
GTGGTGTCGGTGATGACCGCGCCGAGCTCATTTTGAGGTCTGTCTCTTCC
TGACCCAGGTCGCGGTCTCGTCCGGCAATGCTTTTGACGCCTTCAATACT
TTTCATCGCTCCCGCCGCCACTACCCGTCACCTCCCACCACGACAGTTTA
TCATCGAACGGGTTGACGGTTGGGGTTAAAGATTCCCTCGTCAGCGCAGC
GCTTGCTTCGTCGACGATTGAGGTCTACGGGTGAGTATTTGGCAGTTTTC
GTCCCACGAGTACGTATGTGGGTTAGCTATGGATTACAATACAGGTTATC
TAGGCCTCCCGCGAATATGTGTTCAGGGCTTGTTTCTTACCCCCCCCCTA
AATAAATAGCCGGGTTTCCACGCATATACCATAGTCTAGCAGAGCAGCGA
TAACCCCACAAAAATTATTTTCTTTAGTTTTGAGGAGGGAAATACCGTGC
AGCTAGAATATTTGCGCCGAACGATTTTACAAACCTGCCTCTTTCCCCAG
ACTAAGCTTTAAAACCACAATAATGGTAAAACCACAATGCCCACCTTAAC
CTTGGCCGGTCTGACACAGGTTGTCGGGGAACGATATTCCACCCGCGGAC
GCCGAGGTGATACAGGAATACGCATCAGCTAACGTCGAGCTTCGGGCGGT
TGCCGAC
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Coding sequence (CDS) from alignment at H-elongata_contig48829:1303..3809+

>mRNA_H-elongata_contig48829.12053.1 ID=mRNA_H-elongata_contig48829.12053.1|Name=mRNA_H-elongata_contig48829.12053.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at H-elongata_contig48829:1303..3809+ (Himanthalia elongata Himel1 dioecious)
GATCAGCGATATGTGGGTCCTGTGGCAGCTCTGTCGGACACGCTAGCTAA
GCTCCCGAAGCTCAAGGTGTTAGACATGTCACGTTGCACCCTCCTTGGCC
GTGCGGGGCACCGGTACCGAGGATTGATTGCGTTGGGCAGGGCCTTCGCC
TACCAAACTAAAAGCTGTCTAACACACCTCAGGATCAGCGATATGTGGGT
CCTGTGGCAGCTCTGTCGGACACGCTAGCTAAGCTCCCGAAGCTCAAGGT
GTTAGACATGTCACGTTGCACCCTCCTTGGCCGTGCGGGGCACCGGTACC
GAGGATTGATTGCGTTGGGCAGGGCCTTCGCCTACCAAACTAAAAGCTGT
CTAACACACCTCAGGATTTCCAACAACAACCTACATAGCGAGGCAGCTCT
GATTCTGGGGGGCTGGTGCCCAGCAATGCGCCGACTGAGATATTTTGATG
TTTCCGAGATTTCCAACAACAACCTACATAGCGAGGCAGCTCTGATTCTG
GGGGGCTGGTGCCCAGCAATGCGCCGACTGAGATATTTTGATGTTTCCGA
TCGCGTGGGATTCGCCGCTTTGTGTGGCAGCCTCGCTAATATGCTTCACT
TAAGGACGTTGCTCATGAGAGACGTTGGGATCGACGACCGTGGGGCCGAG
GATCTGACGGCATACGTTTCCTCTTCGGTGCGCCTTCAAACTCTTGATAT
CTCCAAAAATCAGTCGCGTGGGATTCGCCGCTTTGTGTGGCAGCCTCGCT
AATATGCTTCACTTAAGGACGTTGCTCATGAGAGACGTTGGGATCGACGA
CCGTGGGGCCGAGGATCTGACGGCATACGTTTCCTCTTCGGTGCGCCTTC
AAACTCTTGATATCTCCAAAAATCAGATGCAAGTCGGGGGCGCCAGGCAC
CTGGCAAAAGGCATGCGCTCAAACGGAACCCTTAGGACCCTCTTCTTGGG
GCGGAACCAGATAGGAGACAAGGGAGGGCGATTGCTGGCGAACAGCATTC
CGCATGCTGCGAACCTTACCGAGTTAGAATGCAAGTCGGGGGCGCCAGGC
ACCTGGCAAAAGGCATGCGCTCAAACGGAACCCTTAGGACCCTCTTCTTG
GGGCGGAACCAGATAGGAGACAAGGGAGGGCGATTGCTGGCGAACAGCAT
TCCGCATGCTGCGAACCTTACCGAGTTAGATTTATCATCGAACGGGTTGA
CGGTTGGGGTTAAAGATTCCCTCGTCAGCGCAGCGCTTGCTTCGTCGACG
ATTGAGGTCTACGGTTTATCATCGAACGGGTTGACGGTTGGGGTTAAAGA
TTCCCTCGTCAGCGCAGCGCTTGCTTCGTCGACGATTGAGGTCTACGGGT
TGTCGGGGAACGATATTCCACCCGCGGACGCCGAGGTGATACAGGAATAC
GCATCAGCTAACGTCGAGCTTCGGGCGGTTGCCGACGTTGTCGGGGAACG
ATATTCCACCCGCGGACGCCGAGGTGATACAGGAATACGCATCAGCTAAC
GTCGAGCTTCGGGCGGTTGCCGAC
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