mRNA_H-elongata_contig48814.12051.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48814.12051.1
Unique NamemRNA_H-elongata_contig48814.12051.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig48814.12051.1 vs. uniprot
Match: D8LT45_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT45_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.020e-14
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 QGLDKAVAWLKGIYIFGLFGGETGQEAPWYLKPVRNFPL 117
            +GLDK +AW K IYIFGLF GETG+EAPWYLKP+  FP+
Sbjct:  118 EGLDKVIAWAKNIYIFGLFEGETGEEAPWYLKPLITFPI 156
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BLAST of mRNA_H-elongata_contig48814.12051.1 vs. uniprot
Match: A0A6H5JSZ6_9PHAE (Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ6_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 3.880e-14
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 QGLDKAVAWLKGIYIFGLFGGETGQEAPWYLKPVRNFPL 117
            +GLDK +AW K IYIFGLF GETG+EAPWYLKP+  FP+
Sbjct:  230 EGLDKVIAWAKNIYIFGLFEGETGEEAPWYLKPLITFPI 268
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BLAST of mRNA_H-elongata_contig48814.12051.1 vs. uniprot
Match: A0A7S1H3N9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H3N9_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.070e-8
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    1 QGLDKAVAWLKGIYIFGLFGGETGQEAPWYLKPVRNFPL 117
            +GL+  +  +KG Y FG F GETG+EAPW+LKP   FP+
Sbjct:   48 EGLEGMIETVKGWYFFGFFEGETGEEAPWFLKPSITFPI 86
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BLAST of mRNA_H-elongata_contig48814.12051.1 vs. uniprot
Match: A0A7S2PPX0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PPX0_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.780e-8
Identity = 21/39 (53.85%), Postives = 26/39 (66.67%), Query Frame = 1 
Query:    1 QGLDKAVAWLKGIYIFGLFGGETGQEAPWYLKPVRNFPL 117
            +G++  +   KG Y FG F GETGQ APWYL+P   FPL
Sbjct:   82 EGIEGLIEKFKGYYFFGFFEGETGQAAPWYLRPAITFPL 120
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BLAST of mRNA_H-elongata_contig48814.12051.1 vs. uniprot
Match: A0A7S1GGZ7_9STRA (Peptidylprolyl isomerase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1GGZ7_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.950e-8
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    1 QGLDKAVAWLKGIYIFGLFGGETGQEAPWYLKPVRNFPL 117
            +G++  V  +K  Y FGLF GETGQEAPWYLKP   FP+
Sbjct:  202 EGIEWVVDKVKNSYFFGLFEGETGQEAPWYLKPSITFPI 240
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BLAST of mRNA_H-elongata_contig48814.12051.1 vs. uniprot
Match: A0A7S1D6P4_CYCTE (Peptidylprolyl isomerase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D6P4_CYCTE)

HSP 1 Score: 56.2 bits (134), Expect = 3.610e-8
Identity = 24/39 (61.54%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:    1 QGLDKAVAWLKGIYIFGLFGGETGQEAPWYLKPVRNFPL 117
            +GL+  +   K  Y FGLF GETGQEAPWYLKP   FPL
Sbjct:  192 EGLEGFLEEAKNWYFFGLFEGETGQEAPWYLKPSITFPL 230
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BLAST of mRNA_H-elongata_contig48814.12051.1 vs. uniprot
Match: K3W4E3_THAOC (Peptidylprolyl isomerase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K3W4E3_THAOC)

HSP 1 Score: 56.2 bits (134), Expect = 3.880e-8
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    1 QGLDKAVAWLKGIYIFGLFGGETGQEAPWYLKPVRNFPL 117
            +GL+  V  ++  Y FGLF GETGQEAPWYLKP   FP+
Sbjct:  219 EGLEWVVDKIRTSYFFGLFEGETGQEAPWYLKPSVTFPI 257
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BLAST of mRNA_H-elongata_contig48814.12051.1 vs. uniprot
Match: A0A1E7F8R5_9STRA (Peptidylprolyl isomerase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F8R5_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 9.120e-8
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:    1 QGLDKAVAWLKGIYIFGLFGGETGQEAPWYLKPVRNFPL 117
            +GL+  +  +K  Y FG F GETG+EAPWYLKP   FP+
Sbjct:  190 EGLEGWIETVKNYYFFGFFEGETGEEAPWYLKPSITFPI 228
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BLAST of mRNA_H-elongata_contig48814.12051.1 vs. uniprot
Match: A0A448ZL45_9STRA (Peptidylprolyl isomerase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZL45_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.410e-7
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:    1 QGLDKAVAWLKGIYIFGLFGGETGQEAPWYLKPVRNFPL 117
            +GL+  +  +K  Y FG F GETG+EAPWYLKP   FP+
Sbjct:  240 EGLEGWIDTVKNYYFFGFFEGETGEEAPWYLKPSITFPI 278
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BLAST of mRNA_H-elongata_contig48814.12051.1 vs. uniprot
Match: A0A7S4VEZ4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VEZ4_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 5.600e-7
Identity = 20/39 (51.28%), Postives = 26/39 (66.67%), Query Frame = 1 
Query:    1 QGLDKAVAWLKGIYIFGLFGGETGQEAPWYLKPVRNFPL 117
            +GLD     +K  Y FG F GETGQ+APW+L+P   FP+
Sbjct:   54 EGLDYWKDKIKSYYFFGFFEGETGQQAPWFLRPSITFPI 92
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48814.12051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LT45_ECTSI1.020e-1471.79Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JSZ6_9PHAE3.880e-1471.79Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CC... [more]
A0A7S1H3N9_9STRA1.070e-853.85Hypothetical protein (Fragment) n=1 Tax=Thalassion... [more]
A0A7S2PPX0_9STRA1.780e-853.85Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S1GGZ7_9STRA1.950e-858.97Peptidylprolyl isomerase n=1 Tax=Skeletonema marin... [more]
A0A7S1D6P4_CYCTE3.610e-861.54Peptidylprolyl isomerase n=1 Tax=Cyclophora tenuis... [more]
K3W4E3_THAOC3.880e-858.97Peptidylprolyl isomerase n=1 Tax=Thalassiosira oce... [more]
A0A1E7F8R5_9STRA9.120e-853.85Peptidylprolyl isomerase n=1 Tax=Fragilariopsis cy... [more]
A0A448ZL45_9STRA1.410e-753.85Peptidylprolyl isomerase n=1 Tax=Pseudo-nitzschia ... [more]
A0A7S4VEZ4_9STRA5.600e-751.28Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48814contigH-elongata_contig48814:125..241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue2.4e-11
Seed eggNOG ortholog2880.D8LT45
KEGG koko:K09568
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0061077,GO:0071704,GO:0097159,GO:0140096,GO:1901363,GO:1901564
EggNOG free text desc.Peptidyl-prolyl cis-trans isomerase
EggNOG OGsCOG0545@1,KOG0544@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03110
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size117
Cds size117
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930803.8255854-CDS-H-elongata_contig48814:124..2411622930803.8255854-CDS-H-elongata_contig48814:124..241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48814 125..241 -
1691679577.1995072-CDS-H-elongata_contig48814:124..2411691679577.1995072-CDS-H-elongata_contig48814:124..241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48814 125..241 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48814.12051.1prot_H-elongata_contig48814.12051.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48814 125..241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48814.12051.1

>prot_H-elongata_contig48814.12051.1 ID=prot_H-elongata_contig48814.12051.1|Name=mRNA_H-elongata_contig48814.12051.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
QGLDKAVAWLKGIYIFGLFGGETGQEAPWYLKPVRNFPL
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mRNA from alignment at H-elongata_contig48814:125..241-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48814.12051.1 ID=mRNA_H-elongata_contig48814.12051.1|Name=mRNA_H-elongata_contig48814.12051.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=117bp|location=Sequence derived from alignment at H-elongata_contig48814:125..241- (Himanthalia elongata Himel1 dioecious)
CAGGGTCTCGACAAGGCCGTGGCGTGGCTTAAGGGCATCTACATTTTCGG
CCTATTCGGCGGTGAGACGGGCCAGGAAGCGCCGTGGTATCTAAAGCCGG
TGAGGAATTTCCCTCTG
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Coding sequence (CDS) from alignment at H-elongata_contig48814:125..241-

>mRNA_H-elongata_contig48814.12051.1 ID=mRNA_H-elongata_contig48814.12051.1|Name=mRNA_H-elongata_contig48814.12051.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at H-elongata_contig48814:125..241- (Himanthalia elongata Himel1 dioecious)
CAGGGTCTCGACAAGGCCGTGGCGTGGCTTAAGGGCATCTACATTTTCGG
CCTATTCGGCGGTGAGACGGGCCAGGAAGCGCCGTGGTATCTAAAGCCGG
TGAGGAATTTCCCTCTGCAGGGTCTCGACAAGGCCGTGGCGTGGCTTAAG
GGCATCTACATTTTCGGCCTATTCGGCGGTGAGACGGGCCAGGAAGCGCC
GTGGTATCTAAAGCCGGTGAGGAATTTCCCTCTG
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