mRNA_H-elongata_contig4877.12043.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4877.12043.1
Unique NamemRNA_H-elongata_contig4877.12043.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig4877.12043.1 vs. uniprot
Match: D8LBE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBE6_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 5.370e-33
Identity = 62/79 (78.48%), Postives = 70/79 (88.61%), Query Frame = 1 
Query:    1 MSRVQTAGGIYLPESKTGKTNEGEVIAVGPGRVTDSGATLPVNVTVGDTVLLPEYGGQTLKLGDEELSLFRDEDILGKF 237
            +++ QTAGG+YLP+SK GKTNEGEV+AVGPGRVT SG  + VNV VG+TVLLPEYGG TL LGDEELSLFRDEDILGKF
Sbjct:   21 VAKTQTAGGVYLPDSKLGKTNEGEVVAVGPGRVTGSGTKIEVNVKVGETVLLPEYGGTTLTLGDEELSLFRDEDILGKF 99
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BLAST of mRNA_H-elongata_contig4877.12043.1 vs. uniprot
Match: A0A067CE69_SAPPC (Chaperonin GroS n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CE69_SAPPC)

HSP 1 Score: 106 bits (265), Expect = 3.000e-24
Identity = 50/77 (64.94%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:   10 VQTAGGIYLPESKTGKTNEGEVIAVGPGRVTDSGATLPVNVTVGDTVLLPEYGGQTLKLGDEELSLFRDEDILGKFH 240
            ++TAGGIYLP+S     NEGEV+AVGPG     G  +P+NV VGD VLLPEYGG  LKLG++E  LFRDEDILGKF+
Sbjct:   23 LKTAGGIYLPDSAKNTQNEGEVVAVGPGARNHEGTIIPMNVAVGDKVLLPEYGGSLLKLGEDEFHLFRDEDILGKFN 99
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BLAST of mRNA_H-elongata_contig4877.12043.1 vs. uniprot
Match: A0A836C8A7_9STRA (10 kDa heat shock protein-like protein, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8A7_9STRA)

HSP 1 Score: 105 bits (263), Expect = 5.880e-24
Identity = 47/77 (61.04%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:    7 RVQTAGGIYLPESKTGKTNEGEVIAVGPGRVTDSGATLPVNVTVGDTVLLPEYGGQTLKLGDEELSLFRDEDILGKF 237
            + QTAGG++LPE+K  K NE EVIAVGPGR T+ G  +P++++VGDTVLLPEYGG T+ L  E+++L R+E+ILGKF
Sbjct:   22 KAQTAGGVFLPETKMAKLNEAEVIAVGPGRRTEDGKVVPMSISVGDTVLLPEYGGHTVSLSGEDVTLLREEEILGKF 98
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BLAST of mRNA_H-elongata_contig4877.12043.1 vs. uniprot
Match: A0A4D9DF31_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DF31_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.450e-23
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:    1 MSRVQTAGGIYLPESKTGKTNEGEVIAVGPGRVTDSGATLPVNVTVGDTVLLPEYGGQTLKLGDEELSLFRDEDILGKF 237
            + + QTAGG++LPE+K  K NEG+VIA+G G     G  +P +V  GDTVLLPEYGG T+KLGDEE  LFRDED+LGKF
Sbjct:   19 LPKTQTAGGVFLPETKLDKPNEGKVIAIGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKF 97
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BLAST of mRNA_H-elongata_contig4877.12043.1 vs. uniprot
Match: A0A024T9R5_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T9R5_9STRA)

HSP 1 Score: 103 bits (257), Expect = 4.030e-23
Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:   10 VQTAGGIYLPESKTGKTNEGEVIAVGPGRVTDSGATLPVNVTVGDTVLLPEYGGQTLKLGDEELSLFRDEDILGKFH 240
            ++TAGGIYLP+S      EGEV+AVGPG     G  +P+ V+VGD VLLPEYGG  LKLGD+E  L+RDE+ILGKFH
Sbjct:   24 LKTAGGIYLPDSAKNTQTEGEVVAVGPGARNFEGNLIPIGVSVGDKVLLPEYGGSVLKLGDDEFHLYRDEEILGKFH 100
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BLAST of mRNA_H-elongata_contig4877.12043.1 vs. uniprot
Match: W7TMI6_9STRA (10 kDa chaperonin n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMI6_9STRA)

HSP 1 Score: 105 bits (261), Expect = 6.310e-23
Identity = 50/79 (63.29%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:    1 MSRVQTAGGIYLPESKTGKTNEGEVIAVGPGRVTDSGATLPVNVTVGDTVLLPEYGGQTLKLGDEELSLFRDEDILGKF 237
            + + QTAGG++LPE+K  K NEG+VIAVG G     G  +P +V  GDTVLLPEYGG T+KLGDEE  LFRDED+LGKF
Sbjct:   82 LPKTQTAGGVFLPETKLDKPNEGKVIAVGAGGRKADGTLIPPSVKEGDTVLLPEYGGHTVKLGDEEYQLFRDEDLLGKF 160
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BLAST of mRNA_H-elongata_contig4877.12043.1 vs. uniprot
Match: A0A485LQG0_9STRA (Aste57867_23858 protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485LQG0_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.020e-22
Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:   10 VQTAGGIYLPESKTGKTNEGEVIAVGPGRVTDSGATLPVNVTVGDTVLLPEYGGQTLKLGDEELSLFRDEDILGKFH 240
            ++TAGGIYLP+S      EGEV+AVGPG     G  +PV+V VGD VLLPEYGG  LKLG++E  L+RDE+ILGKFH
Sbjct:   23 LKTAGGIYLPDSGKNTQTEGEVVAVGPGARNHEGNIIPVSVAVGDKVLLPEYGGSILKLGEDEFHLYRDEEILGKFH 99
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BLAST of mRNA_H-elongata_contig4877.12043.1 vs. uniprot
Match: A0A397D550_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397D550_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.210e-22
Identity = 47/77 (61.04%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:   10 VQTAGGIYLPESKTGKTNEGEVIAVGPGRVTDSGATLPVNVTVGDTVLLPEYGGQTLKLGDEELSLFRDEDILGKFH 240
            ++TAGGIYLP+S      EGEV+AVGPG     G+ +P+ V+VGD VLLPEYGG  LKLG++E  L+RDE+ILGKFH
Sbjct:   51 LKTAGGIYLPDSGKNSQTEGEVVAVGPGARNHEGSLIPLGVSVGDKVLLPEYGGSVLKLGEDEFHLYRDEEILGKFH 127
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BLAST of mRNA_H-elongata_contig4877.12043.1 vs. uniprot
Match: A0A5A8EDG3_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EDG3_CAFRO)

HSP 1 Score: 100 bits (249), Expect = 5.360e-22
Identity = 50/76 (65.79%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:   10 VQTAGGIYLPESKTGKTNEGEVIAVGPGRVTDSGATLPVNVTVGDTVLLPEYGGQTLKLGDEELSLFRDEDILGKF 237
            ++TAGG+ LPES   K NEGEV+AVGPG +   G    V V VGDTVLLPEYGG T+K+GD+E  LFRDEDILGKF
Sbjct:   25 LKTAGGVLLPESGV-KKNEGEVVAVGPGALDRDGKRRAVAVAVGDTVLLPEYGGHTVKMGDQEFQLFRDEDILGKF 99
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BLAST of mRNA_H-elongata_contig4877.12043.1 vs. uniprot
Match: A0A7S1V0N9_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V0N9_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.190e-21
Identity = 50/78 (64.10%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:   10 VQTAGGIYLPESKTGKTNEGEVIAVGPGRVTDSGATLPVNVTVGDTVLLPEYGGQTLKLGDEELSLFRDEDILGKFHG 243
            VQTAGGIYLPES +   NEGEV+AVGPG    +GA    N+  GD+VLLPEYGG  +KL DEE+ LFR+ DILGKF G
Sbjct:   52 VQTAGGIYLPESTSKDANEGEVVAVGPGERDVTGALHAPNLKAGDSVLLPEYGGTKVKLDDEEVFLFRESDILGKFEG 129
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4877.12043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBE6_ECTSI5.370e-3378.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A067CE69_SAPPC3.000e-2464.94Chaperonin GroS n=4 Tax=Saprolegniaceae TaxID=4764... [more]
A0A836C8A7_9STRA5.880e-2461.0410 kDa heat shock protein-like protein, mitochondr... [more]
A0A4D9DF31_9STRA1.450e-2362.03Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A024T9R5_9STRA4.030e-2362.34Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
W7TMI6_9STRA6.310e-2363.2910 kDa chaperonin n=2 Tax=Nannochloropsis gaditana... [more]
A0A485LQG0_9STRA1.020e-2262.34Aste57867_23858 protein n=2 Tax=Aphanomyces TaxID=... [more]
A0A397D550_9STRA1.210e-2261.04Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A5A8EDG3_CAFRO5.360e-2265.79Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A7S1V0N9_9STRA1.190e-2164.10Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4877contigH-elongata_contig4877:279..2228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue2e-28
Seed eggNOG ortholog2880.D8LBE6
Preferred nameHSPE1
KEGG koko:K04078
GOsGO:0003674,GO:0005488,GO:0005507,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006457,GO:0006458,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006919,GO:0006950,GO:0006986,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009893,GO:0009987,GO:0010033,GO:0010604,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0019222,GO:0022607,GO:0030150,GO:0030162,GO:0031323,GO:0031325,GO:0031974,GO:0032268,GO:0032270,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0035966,GO:0042026,GO:0042221,GO:0042886,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043280,GO:0043281,GO:0043933,GO:0044085,GO:0044093,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045041,GO:0045184,GO:0045862,GO:0046872,GO:0046907,GO:0046914,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051131,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0052547,GO:0052548,GO:0055085,GO:0060255,GO:0061077,GO:0065002,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0080090,GO:1990542,GO:2000116,GO:2001056
EggNOG free text desc.chaperone cofactor-dependent protein refolding
EggNOG OGsCOG0234@1,KOG1641@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionChaperonin Cpn10
Ec32 orthologEc-27_004240.1
Exons2
Model size1483
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4877.12043.1prot_H-elongata_contig4877.12043.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4877 279..991 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930802.8462572-CDS-H-elongata_contig4877:278..5181622930802.8462572-CDS-H-elongata_contig4877:278..518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4877 279..518 +
1691679576.7072284-CDS-H-elongata_contig4877:278..5181691679576.7072284-CDS-H-elongata_contig4877:278..518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4877 279..518 +
1622930802.8628595-CDS-H-elongata_contig4877:985..9911622930802.8628595-CDS-H-elongata_contig4877:985..991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4877 986..991 +
1691679576.7226794-CDS-H-elongata_contig4877:985..9911691679576.7226794-CDS-H-elongata_contig4877:985..991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4877 986..991 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930802.8741267-UTR-H-elongata_contig4877:991..22281622930802.8741267-UTR-H-elongata_contig4877:991..2228Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4877 992..2228 +
1691679576.7338934-UTR-H-elongata_contig4877:991..22281691679576.7338934-UTR-H-elongata_contig4877:991..2228Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4877 992..2228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4877.12043.1

>prot_H-elongata_contig4877.12043.1 ID=prot_H-elongata_contig4877.12043.1|Name=mRNA_H-elongata_contig4877.12043.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
MSRVQTAGGIYLPESKTGKTNEGEVIAVGPGRVTDSGATLPVNVTVGDTV
LLPEYGGQTLKLGDEELSLFRDEDILGKFHG*
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mRNA from alignment at H-elongata_contig4877:279..2228+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4877.12043.1 ID=mRNA_H-elongata_contig4877.12043.1|Name=mRNA_H-elongata_contig4877.12043.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1950bp|location=Sequence derived from alignment at H-elongata_contig4877:279..2228+ (Himanthalia elongata Himel1 dioecious)
ATGTCGCGTGTGCAGACAGCTGGTGGCATCTACCTTCCAGAAAGTAAGAC
TGGCAAGACAAATGAAGGCGAGGTTATCGCCGTTGGGCCTGGTCGGGTGA
CGGACAGTGGCGCCACTTTGCCCGTGAACGTTACCGTTGGAGACACTGTC
CTCCTGCCAGAGTACGGCGGCCAGACTTTAAAGCTTGGAGATGAAGAGCT
CAGCTTGTTCAGAGACGAGGATATTCTGGGGAAGTTTCACGTGAGATACT
AGTACCTTACGCCCTGTGCGGAAGTGTGGGATGTAGGCGAGCATCTCAAC
AGCGATGGGTTTAGGGCCTCCTTATTCTGTACCCTAAATTAGAAGAAACA
CCCATAGCTCAAAAGAAACGTTGCTTTTGTTCAAAATGAAAGTTGTCTGA
GTACCTGGTCACTCGTGTTCTGCCTTGCACGTTGGCTTAATTTTCCGAAG
CTGTCGTAGGAGCACGTCGACTCAATATATCAAGGCCATTCCGGTCACCA
CCGTTCAGCGTTTTAGACCGGGTACAGCCCAGGTCGAGAGCCTCGCTTTC
ATGATTTCTATTTTTTTTTATGTGACACGTTTTTTTAGCAGTAGGCCTTT
TGTCCCCTCAATAGGTAAATGCTCCAATATCATGTTTATTTCTTTTTATT
TAAATTGTTTGACATGACCTTGCTATTAATGGTATTTAATTATTTCCTCC
TTTTCAGGGCTAATTATGATTCGAAGCAGATTAGCTGCACGCCGACCACT
GCAGCATCGAAGCCTTGAAGTGAGCCTACATCTCGAGGTTTTGTCAAGAC
CCCGTCGAACAGGAACAGCTCGCGTTGAAGATCCTCTTGCAAGAACCGTA
CTTCTCTAGATCGATAGATCGATCAAGTAGTTATTTGTAGACGTCAGGAT
GTCGGTGGGACTAAGGCTCGGTTTATACGGACTCTTAAAAGACAATATTT
TTGAATTTCTTGTTTCAAAAATATTGAATCGAATCAAAATTTTTGAAGTT
CAGTTTATACATGTTTTTGCCCAAAATGTTGACAAAACGCGTTACCGTAC
AGCATGCTGACAAAATCCCCAATTTGTGTTATTAAACCACAAAAGCAGAT
GATCTGGAGCTGCAAAAAGGGGGCATGGCTAGTGTGAAAAACGGTAATCG
ATTTTGATGACATGCGTGCGTACGTCAGATCATATGTAGAGAGTGATCGC
GTACGCGCAAGGATACAAAGTGACGCATCAGCAAGGGCTGCTCTGCCTGC
CCCAAATTTCAAACTTTTCCAGCAAAGGGTTGCGGTATTTTTATCAACTT
CGTATTTTCAAAAAAAAAACTCACTGAAGCTGCTCGAGGGGGGCGGCCAT
TGGTTAATTTCGTCGTGCGAGTTTTGCTAGCTTTTCATTGATGTTTGGGC
ATTGTCGGGGGTGGAGGCCAAAAATCGAACTTTTATTCATCGCTGACATT
GGCTACTGTGCTCTGTCTGGATCAAAACTTCCCAGAAAGGGTAACGGTAT
TTTTATCGACTTCGTTGTTTCCGAAAAATATATCAGCTCTACAGCTGCTC
GAGGGACGGCCGATGCATCAGCAAGGGTGCGCTGTCTGTCCCAAAACTTC
CCAGCAAAGGGTTACGGTATTTTTATCGGCTTCCTAGTTTCCCCAAAATA
TCTCAGGTCTACAGCTGCTCGACGGGCGTCCGACGCATCAGCAAGGGTGC
GCTCTGTGTGCCCCAAAAATTCCCAGCAAAGGGTTACTTTTCATCGATTT
CCTAGTTTCCCAAAATATATCAGGTCTGCACTGCTGCAGTTGATCGAGGG
GCGGCCATTGGGTAATTTCGTCATGCGAGTTTTGCTAGCTCATGTTTGGG
CATTGTTGGGGTTGGAGGCCAAAACTCGGACGCTTGTTCATCCCTGACAT
TGACATTGGCTGCTTGATCTTACCTACGAAGCCCCACAGTGTTGGGTATG
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Coding sequence (CDS) from alignment at H-elongata_contig4877:279..2228+

>mRNA_H-elongata_contig4877.12043.1 ID=mRNA_H-elongata_contig4877.12043.1|Name=mRNA_H-elongata_contig4877.12043.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig4877:279..2228+ (Himanthalia elongata Himel1 dioecious)
ATGTCGCGTGTGCAGACAGCTGGTGGCATCTACCTTCCAGAAAGTAAGAC
TGGCAAGACAAATGAAGGCGAGGTTATCGCCGTTGGGCCTGGTCGGGTGA
CGGACAGTGGCGCCACTTTGCCCGTGAACGTTACCGTTGGAGACACTGTC
CTCCTGCCAGAGTACGGCGGCCAGACTTTAAAGCTTGGAGATGAAGAGCT
CAGCTTGTTCAGAGACGAGGATATTCTGGGGAAGTTTCACATGTCGCGTG
TGCAGACAGCTGGTGGCATCTACCTTCCAGAAAGTAAGACTGGCAAGACA
AATGAAGGCGAGGTTATCGCCGTTGGGCCTGGTCGGGTGACGGACAGTGG
CGCCACTTTGCCCGTGAACGTTACCGTTGGAGACACTGTCCTCCTGCCAG
AGTACGGCGGCCAGACTTTAAAGCTTGGAGATGAAGAGCTCAGCTTGTTC
AGAGACGAGGATATTCTGGGGAAGTTTCACGGCTAAGGCTAA
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