mRNA_H-elongata_contig48711.12035.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig48711.12035.1 vs. uniprot
Match: D7G110_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G110_ECTSI) HSP 1 Score: 264 bits (675), Expect = 2.600e-82 Identity = 131/159 (82.39%), Postives = 144/159 (90.57%), Query Frame = 1
Query: 31 QVTQGTLGVIEYLVSCGLGGVAYATFSGQPMTFIGPTGLTLAFITSLYSFTSLAGLPFLPVYSWVGMWTSCFLVVLSLIGASNLIQYATQFTDDVFNALLSVNFIYEAARSLMRNFSPTVAGYSQAGALMSLNVALATYVGCRKTSAALGSGMFNTRVR 507
QVTQGTLGVIEY+VSCGLGG+ YA F GQPMTFIGPTGLTLAF+TSLYSFTS+AGLPFLPVY+WVG+WTS FL L+ +GASNLI++ATQFTDDVFNALLSVNFIYEAARSLMRNFSP AGY+QAGALMSLNVA+ATYVGCRKTS AL S FN +R
Sbjct: 268 QVTQGTLGVIEYVVSCGLGGMTYAAFGGQPMTFIGPTGLTLAFMTSLYSFTSVAGLPFLPVYAWVGLWTSAFLATLAFVGASNLIEFATQFTDDVFNALLSVNFIYEAARSLMRNFSPAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIR 426
BLAST of mRNA_H-elongata_contig48711.12035.1 vs. uniprot
Match: A0A836CJA6_9STRA (Bicarbonate transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA6_9STRA) HSP 1 Score: 185 bits (469), Expect = 5.110e-53 Identity = 98/159 (61.64%), Postives = 122/159 (76.73%), Query Frame = 1
Query: 31 QVTQGTLGVIEYLVSCGLGGVAYATFSGQPMTFIGPTGLTLAFITSLYSFTSLAGLPFLPVYSWVGMWTSCFLVVLSLIGASNLIQYATQFTDDVFNALLSVNFIYEAARSLMRNFSPTVAGYSQAGALMSLNVALATYVGCRKTSAALGSGMFNTRVR 507
QVT G +GV+EYLV+CG GVAY+ FSGQPMTF GPTGLTLAFIT+L++FTS A LPFLPVY+W G+WTS +V L+ GASNL++YATQFTDDVFNAL+++NF+ EA L RNF AG S GAL+++NVA A+Y+ + + A GS FN VR
Sbjct: 70 QVTGGAMGVVEYLVACGGSGVAYSLFSGQPMTFTGPTGLTLAFITALHAFTSAAALPFLPVYTWCGLWTSALMVALAAGGASNLVRYATQFTDDVFNALIALNFLAEACGGLARNFKLGGAGGS-GGALLAVNVAGASYLLTQALTQARGSVYFNKGVR 227
BLAST of mRNA_H-elongata_contig48711.12035.1 vs. uniprot
Match: A0A0G4H159_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H159_VITBC) HSP 1 Score: 182 bits (461), Expect = 3.120e-50 Identity = 92/159 (57.86%), Postives = 119/159 (74.84%), Query Frame = 1
Query: 31 QVTQGTLGVIEYLVSCGLGGVAYATFSGQPMTFIGPTGLTLAFITSLYSFTSLAGLPFLPVYSWVGMWTSCFLVVLSLIGASNLIQYATQFTDDVFNALLSVNFIYEAARSLMRNFSPTVAGYSQAGALMSLNVALATYVGCRKTSAALGSGMFNTRVR 507
+T G++GV E+LV+CG GG+AY+ FSGQPMTFIGPTGLTLAF T+LY+F LPF+P+YSW G+WTS +L++L++ GA LI+Y TQFTDDVFNALL+ NF+YEAA SL+ NF + G + G L+SLNVALATY R+ S + FN +R
Sbjct: 224 SITGGSMGVPEFLVACGCGGMAYSVFSGQPMTFIGPTGLTLAFTTALYAFCRQWSLPFMPLYSWTGLWTSLWLMLLAVAGAPELIKYCTQFTDDVFNALLACNFVYEAAASLLGNFMRS--GLDKTGPLLSLNVALATYFLARRLSLSYRWRFFNKNIR 380
BLAST of mRNA_H-elongata_contig48711.12035.1 vs. uniprot
Match: A0A7S3XU83_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU83_HETAK) HSP 1 Score: 174 bits (442), Expect = 5.950e-49 Identity = 92/159 (57.86%), Postives = 116/159 (72.96%), Query Frame = 1
Query: 34 VTQGTLGVIEYLVSCGLGGVAYATFSGQPMTFIGPTGLTLAFITSLYSFTSLAGLPFLPVYSWVGMWTSCFLVVLSLIGASNLIQYATQFTDDVFNALLSVNFIYEAARSLMRNF-SPTVAGYSQAGALMSLNVALATYVGCRKTSAALGSGMFNTRVR 507
+T G LGV+E L++ G GG AY+ SGQPMTFIGPTGLTL F +L+SF +L GLPFLP++SWVG+WTS FL +LS GASN I+Y TQFTDDVFN+LL+VNF+YEA RSL NF + AG Q A SLN+ALA Y R+ +A G+ + ++R
Sbjct: 88 LTGGQLGVVEVLMATGFGGAAYSFLSGQPMTFIGPTGLTLVFTAALHSFCALRGLPFLPMFSWVGLWTSGFLALLSATGASNGIKYCTQFTDDVFNSLLAVNFVYEALRSLWGNFRAAAAAGADQTSAFFSLNLALAYYALSRRVTAFRGTRYLSEQLR 246
BLAST of mRNA_H-elongata_contig48711.12035.1 vs. uniprot
Match: A0A6H5KFP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP7_9PHAE) HSP 1 Score: 169 bits (428), Expect = 6.260e-48 Identity = 84/109 (77.06%), Postives = 96/109 (88.07%), Query Frame = 1
Query: 181 TSLAGLPFLPVYSWVGMWTSCFLVVLSLIGASNLIQYATQFTDDVFNALLSVNFIYEAARSLMRNFSPTVAGYSQAGALMSLNVALATYVGCRKTSAALGSGMFNTRVR 507
TS+AGLPFLPVY+WVG+WTS FL L+ + ASNLI++ATQFTDDVFNALLS+NFIYEAARSLMRNF+P AGY+QAGALMSLNVA+ATYVGCRKTS AL S FN +R
Sbjct: 10 TSVAGLPFLPVYAWVGLWTSAFLATLAFVEASNLIEFATQFTDDVFNALLSLNFIYEAARSLMRNFNPAAAGYTQAGALMSLNVAVATYVGCRKTSGALSSTFFNGGIR 118
BLAST of mRNA_H-elongata_contig48711.12035.1 vs. uniprot
Match: A0A835ZK65_9STRA (HCO3 transporter family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK65_9STRA) HSP 1 Score: 162 bits (410), Expect = 3.520e-45 Identity = 83/129 (64.34%), Postives = 104/129 (80.62%), Query Frame = 1
Query: 121 MTFIGPTGLTLAFITSLYSFTSLAGLPFLPVYSWVGMWTSCFLVVLSLIGASNLIQYATQFTDDVFNALLSVNFIYEAARSLMRNFSPTVAGYSQAGALMSLNVALATYVGCRKTSAALGSGMFNTRVR 507
MTFIGPTGLTLAF+T+LY FTS LPFLPVYSW G+WTS ++++L++ GASNLI+YATQFTDDVFNALL+VNF++EA+RSL RNF GY+++GA ++LN+AL TY RKT AA S FN +R
Sbjct: 1 MTFIGPTGLTLAFMTALYGFTSAMSLPFLPVYSWCGVWTSGYMLLLAMGGASNLIRYATQFTDDVFNALLAVNFLFEASRSLFRNFQD---GYNKSGAFLALNLALLTYTTTRKTVAARNSRYFNEEIR 126
BLAST of mRNA_H-elongata_contig48711.12035.1 vs. uniprot
Match: A0A7S2YSC6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YSC6_9STRA) HSP 1 Score: 159 bits (401), Expect = 4.670e-44 Identity = 82/158 (51.90%), Postives = 110/158 (69.62%), Query Frame = 1
Query: 34 VTQGTLGVIEYLVSCGLGGVAYATFSGQPMTFIGPTGLTLAFITSLYSFTSLAGLPFLPVYSWVGMWTSCFLVVLSLIGASNLIQYATQFTDDVFNALLSVNFIYEAARSLMRNFSPTVAGYSQAGALMSLNVALATYVGCRKTSAALGSGMFNTRVR 507
+T TLG++EY++S L G+AY+ GQPM FI PTGLTLAFI+ LY F + GLPF P+YSWVG+WTS ++L L GA +LI++ T+FTD+VFNALLS+NFIYEA RSL RNF+ + +SL++A T+ +T+A S FN +VR
Sbjct: 187 ITHNTLGIVEYMLSTSLSGMAYSLICGQPMAFIAPTGLTLAFISGLYRFCTQKGLPFFPIYSWVGIWTSVLFIILGLGGAGSLIRFCTRFTDEVFNALLSLNFIYEAVRSLRRNFAEADPS-NLTMPFVSLSIAWGTWFLTARTAAFEYSRFFNQKVR 343
BLAST of mRNA_H-elongata_contig48711.12035.1 vs. uniprot
Match: A0A1Z5JKD1_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKD1_FISSO) HSP 1 Score: 162 bits (411), Expect = 6.230e-44 Identity = 85/169 (50.30%), Postives = 115/169 (68.05%), Query Frame = 1
Query: 1 PPLSLPPLIFQVTQGTLGVIEYLVSCGLGGVAYATFSGQPMTFIGPTGLTLAFITSLYSFTSLAGLPFLPVYSWVGMWTSCFLVVLSLIGASNLIQYATQFTDDVFNALLSVNFIYEAARSLMRNFSPTVAGYSQAGALMSLNVALATYVGCRKTSAALGSGMFNTRVR 507
P +S + ++T G +G++E+L+S GL GVAY+ GQPM FI PTGLTLAFI+ L+ F +L GLPF PVYSWVG+WTS F VVL L G+S LI++ T+FTD++FNALLS+NF+YEA SL RNF T + ++L +AL T+ + +A S FN + R
Sbjct: 167 PAVSFGTIATEITNGAMGIVEFLLSAGLSGVAYSILCGQPMAFIAPTGLTLAFISGLFRFCTLRGLPFFPVYSWVGLWTSFFFVVLGLKGSSQLIRFCTRFTDEIFNALLSMNFLYEAIASLKRNFE-TADPMNLTMPFVALAMALTTFWSTMQVAAFETSKFFNQKAR 334
BLAST of mRNA_H-elongata_contig48711.12035.1 vs. uniprot
Match: A0A7S2VYJ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VYJ5_9STRA) HSP 1 Score: 151 bits (381), Expect = 6.620e-44 Identity = 70/126 (55.56%), Postives = 95/126 (75.40%), Query Frame = 1
Query: 1 PPLSLPPLIFQVTQGTLGVIEYLVSCGLGGVAYATFSGQPMTFIGPTGLTLAFITSLYSFTSLAGLPFLPVYSWVGMWTSCFLVVLSLIGASNLIQYATQFTDDVFNALLSVNFIYEAARSLMRNF 378
P +S + Q+T G++GV+E+L+ G G+AY+ GQPM FI PTGLTLAFI+ L+ + +L +PF P+Y+WVG+WTS F++ L GAS I+Y T+FTD++FNALLSVNFIYEAA+SL RNF
Sbjct: 18 PAVSFGTIASQITNGSIGVVEFLLGSGCAGMAYSILCGQPMAFIAPTGLTLAFISGLFKYCTLKHIPFYPIYTWVGLWTSFFMITLGTRGASKFIKYCTRFTDEIFNALLSVNFIYEAAKSLRRNF 143
BLAST of mRNA_H-elongata_contig48711.12035.1 vs. uniprot
Match: A0A7S1FU71_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FU71_9STRA) HSP 1 Score: 161 bits (408), Expect = 1.290e-43 Identity = 86/172 (50.00%), Postives = 118/172 (68.60%), Query Frame = 1
Query: 1 PPLSLPPLIFQVTQGTLGVIEYLVSCGLGGVAYATFSGQPMTFIGPTGLTLAFITSLYSFTSLAGLPFLPVYSWVGMWTSCFLVVLSLIGASNLIQYATQFTDDVFNALLSVNFIYEAARSLMRNF---SPTVAGYSQAGALMSLNVALATYVGCRKTSAALGSGMFNTRVR 507
P +S + Q+TQG++G++E+L S G+ G+AYA +GQPM FI PTGLTLAFI+ L+ F ++ LPF PVY+WVG+WTS F++ L L GAS LI+Y T+FTD+VFN+LLS+NFIYEA S+ RNF PT + +SL +AL TY KT++ + FN + R
Sbjct: 145 PAISFGAVASQITQGSIGIVEFLFSSGVAGMAYAILAGQPMAFIAPTGLTLAFISGLFRFCQVSALPFFPVYAWVGLWTSLFMIALGLGGASKLIRYCTRFTDEVFNSLLSMNFIYEALSSIRRNFVQADPT----NLTMPFVSLQMALCTYWLTLKTASFHRTDFFNRKWR 312 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48711.12035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig48711.12035.1 >prot_H-elongata_contig48711.12035.1 ID=prot_H-elongata_contig48711.12035.1|Name=mRNA_H-elongata_contig48711.12035.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=171bp PPLSLPPLIFQVTQGTLGVIEYLVSCGLGGVAYATFSGQPMTFIGPTGLTback to top mRNA from alignment at H-elongata_contig48711:71..2069- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig48711.12035.1 ID=mRNA_H-elongata_contig48711.12035.1|Name=mRNA_H-elongata_contig48711.12035.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1999bp|location=Sequence derived from alignment at H-elongata_contig48711:71..2069- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig48711:71..2069- >mRNA_H-elongata_contig48711.12035.1 ID=mRNA_H-elongata_contig48711.12035.1|Name=mRNA_H-elongata_contig48711.12035.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1026bp|location=Sequence derived from alignment at H-elongata_contig48711:71..2069- (Himanthalia elongata Himel1 dioecious)back to top |