mRNA_H-elongata_contig48683.12030.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig48683.12030.1 vs. uniprot
Match: A0A6H5L0C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0C0_9PHAE) HSP 1 Score: 306 bits (783), Expect = 3.580e-100 Identity = 161/211 (76.30%), Postives = 179/211 (84.83%), Query Frame = 1
Query: 19 LEIAKGSPSAATAAVQGFLKSSVAKVEELGPLGPLYFGGLYVLAEVLIIPALPLTTAAGFLFGVPGGTAVVLLSATIAAVISFQLGRTLLRQQVEGLLEDNPKFRAIDKAIAKEGFKIILLLRLSPIFPFALSNYLYGVTSVDFMEFMGGTILGFFPGTLLYVYGGTVGKGIMGGEGMALPWYADVAAIVFVAFLLKTAGDIATSAIEDIE 651
+E AK SA + AVQ FL SSV KVEELGPLG +YFG LYVLAEVLIIPA+PLT AAGFLFG GGTAVVL SATIAA ISFQLGRTLLRQQVEGLLE+NPKFRA+DKAIAKEGFK+ILLLRLSPIFPFALSNYLYGVTSVDF+E+M GT+LGFFPGTL YVYGGT+GK + G G LPWY VA A+LLKT G+IAT+A+E++E
Sbjct: 208 VETAKAGHSAPSTAVQAFLSSSVTKVEELGPLGVVYFGLLYVLAEVLIIPAIPLTAAAGFLFGAAGGTAVVLTSATIAAAISFQLGRTLLRQQVEGLLEENPKFRALDKAIAKEGFKVILLLRLSPIFPFALSNYLYGVTSVDFLEYMMGTLLGFFPGTLAYVYGGTLGKVVTDGGGTGLPWYGYVAGAALTAYLLKTVGEIATAAVEEME 418
BLAST of mRNA_H-elongata_contig48683.12030.1 vs. uniprot
Match: A0A835ZF34_9STRA (Snare associated Golgi protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF34_9STRA) HSP 1 Score: 234 bits (596), Expect = 6.120e-75 Identity = 120/193 (62.18%), Postives = 149/193 (77.20%), Query Frame = 1
Query: 94 VEELGPLGPLYFGGLYVLAEVLIIPALPLTTAAGFLFGVPGGTAVVLLSATIAAVISFQLGRTLLRQQVEGLLEDNPKFRAIDKAIAKEGFKIILLLRLSPIFPFALSNYLYGVTSVDFMEFMGGTILGFFPGTLLYVYGG-TVGKGIMGGEGMALPWYADVAAIVFVAFLLKTAGDIATSAIEDIEPSLRDK 669
++ GP+G LYFG LYV+AEVL IPALPLT ++G+LFG+ GGT VV+ SATIAA ISF LGRT LR+ VE LL DN KF+AID AI +EGFKIILLLRLSPIFPFA+SNYLYG+TSV F E++G ++LGF PGT+ YVYGG +G + GG+G LPWY +V VA +K GDIAT A+ +IEP + ++
Sbjct: 2 IQSAGPMGYLYFGALYVIAEVLAIPALPLTASSGYLFGLVGGTTVVICSATIAAGISFLLGRTFLRKWVEELLGDNAKFKAIDSAIGREGFKIILLLRLSPIFPFAISNYLYGITSVPFWEYLGASMLGFLPGTIAYVYGGGQLGSLVDGGDGGGLPWYGYALGLVAVAATIKLVGDIATKAVAEIEPGIMEE 194
BLAST of mRNA_H-elongata_contig48683.12030.1 vs. uniprot
Match: A0A7S1FUG6_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FUG6_9STRA) HSP 1 Score: 216 bits (549), Expect = 2.410e-67 Identity = 114/196 (58.16%), Postives = 141/196 (71.94%), Query Frame = 1
Query: 64 QGFLKSSVAKVEELGPLGPLYFGGLYVLAEVLIIPALPLTTAAGFLFGVPGGTAVVLLSATIAAVISFQLGRTLLRQQVEGLLEDNPKFRAIDKAIAKEGFKIILLLRLSPIFPFALSNYLYGVTSVDFMEFMGGTILGFFPGTLLYVYGGTVGKGIMGGEGMALPWYADVAAIVFVAFLLKTAGDIATSAIEDIE 651
Q L +V ++E G +G LYFG +Y +AE+L IPA+PLT +AG+LFGV GTAVVL++A++AA +SF LGR LR VE +LEDNP+F+A+D AI KEGFK++LLLRLSPIFPFALSNYLYGVTSV F + GT+LGF PGTL YVY G GK + GMA PWY + A +K DIAT IED+E
Sbjct: 25 QQLLTDAVVQIEAAGAMGYLYFGVIYTIAEILAIPAIPLTASAGYLFGVLPGTAVVLVAASVAASVSFLLGRYALRGAVEKILEDNPRFKAMDAAIGKEGFKLMLLLRLSPIFPFALSNYLYGVTSVRFWPYFWGTMLGFAPGTLAYVYTGEFGKALTMDAGMAAPWYIYAGGLALGACGIKIIADIATRTIEDME 220
BLAST of mRNA_H-elongata_contig48683.12030.1 vs. uniprot
Match: A0A7S4I716_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I716_9STRA) HSP 1 Score: 218 bits (556), Expect = 1.770e-66 Identity = 122/223 (54.71%), Postives = 152/223 (68.16%), Query Frame = 1
Query: 4 SFGAVLEIAKGSPSAATAAVQGF-------LKSSVAKVEELGPLGPLYFGGLYVLAEVLIIPALPLTTAAGFLFGVPGGTAVVLLSATIAAVISFQLGRTLLRQQVEGLLEDNPKFRAIDKAIAKEGFKIILLLRLSPIFPFALSNYLYGVTSVDFMEFMGGTILGFFPGTLLYVYGGTVGKGIMGGEGMALPWYADVAAIVFVAFLLKTAGDIATSAIEDIE 651
S G V + + S S T AVQ F L++ V VE +GP G LYFG +Y +AE+L IPA+PLT +AG+LFGV GTAVVL SA+IAA ISF +GRTLLR VE +LED PKF+ IDKAI +EGFK++LLLRLSPIFPFALSNYLYG TS+ F + GT+LGF PGT+ YVY G +GK + A PWY + +A LK D+AT IE+++
Sbjct: 153 SLGIVGDFSLPSSSGVTMAVQRFFSDPNASLEAVVKSVEAMGPSGFLYFGIIYTVAEILAIPAIPLTASAGYLFGVTEGTAVVLASASIAAAISFIIGRTLLRTYVESVLEDYPKFKKIDKAIGREGFKLMLLLRLSPIFPFALSNYLYGATSIGFWPYFFGTMLGFTPGTIAYVYTGEIGKALTLDSATAEPWYVYAGGMTLLAGCLKVVADVATGIIENLD 375
BLAST of mRNA_H-elongata_contig48683.12030.1 vs. uniprot
Match: A0A7S0CCP1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CCP1_9STRA) HSP 1 Score: 210 bits (535), Expect = 1.110e-65 Identity = 105/190 (55.26%), Postives = 140/190 (73.68%), Query Frame = 1
Query: 82 SVAKVEELGPLGPLYFGGLYVLAEVLIIPALPLTTAAGFLFGVPGGTAVVLLSATIAAVISFQLGRTLLRQQVEGLLEDNPKFRAIDKAIAKEGFKIILLLRLSPIFPFALSNYLYGVTSVDFMEFMGGTILGFFPGTLLYVYGGTVGKGIMGGEGMALPWYADVAAIVFVAFLLKTAGDIATSAIEDIE 651
+V +++++GP G YFG +Y +AE+L IPA+PLT +AG+LFGV GT +VLLSA+IAA ISF +GRTLLR VEG+L + PK + +D+AI+ +GFKI+LL+R++PIFPFALSNYLYGVTSV F + GT+LGF PGT YVY G VGK + G+ A PWY + + LK GDIA+ I++IE
Sbjct: 3 TVTQIQDMGPSGVAYFGFIYTIAEILAIPAIPLTASAGYLFGVRDGTLIVLLSASIAASISFFIGRTLLRSYVEGILGEYPKLQKLDRAISSQGFKIMLLVRIAPIFPFALSNYLYGVTSVKFWPYFWGTMLGFAPGTFAYVYSGVVGKILTSGDDAAQPWYVYAGGLALFSGFLKIGGDIASDIIDNIE 192
BLAST of mRNA_H-elongata_contig48683.12030.1 vs. uniprot
Match: A0A7S1FUT1_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FUT1_9STRA) HSP 1 Score: 216 bits (549), Expect = 1.470e-65 Identity = 114/196 (58.16%), Postives = 141/196 (71.94%), Query Frame = 1
Query: 64 QGFLKSSVAKVEELGPLGPLYFGGLYVLAEVLIIPALPLTTAAGFLFGVPGGTAVVLLSATIAAVISFQLGRTLLRQQVEGLLEDNPKFRAIDKAIAKEGFKIILLLRLSPIFPFALSNYLYGVTSVDFMEFMGGTILGFFPGTLLYVYGGTVGKGIMGGEGMALPWYADVAAIVFVAFLLKTAGDIATSAIEDIE 651
Q L +V ++E G +G LYFG +Y +AE+L IPA+PLT +AG+LFGV GTAVVL++A++AA +SF LGR LR VE +LEDNP+F+A+D AI KEGFK++LLLRLSPIFPFALSNYLYGVTSV F + GT+LGF PGTL YVY G GK + GMA PWY + A +K DIAT IED+E
Sbjct: 163 QQLLTDAVVQIEAAGAMGYLYFGVIYTIAEILAIPAIPLTASAGYLFGVLPGTAVVLVAASVAASVSFLLGRYALRGAVEKILEDNPRFKAMDAAIGKEGFKLMLLLRLSPIFPFALSNYLYGVTSVRFWPYFWGTMLGFAPGTLAYVYTGEFGKALTMDAGMAAPWYIYAGGLALGACGIKIIADIATRTIEDME 358
BLAST of mRNA_H-elongata_contig48683.12030.1 vs. uniprot
Match: A0A7S2K1V4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K1V4_9STRA) HSP 1 Score: 213 bits (543), Expect = 4.040e-65 Identity = 110/174 (63.22%), Postives = 134/174 (77.01%), Query Frame = 1
Query: 73 LKSSVAKVEELGPLGPLYFGGLYVLAEVLIIPALPLTTAAGFLFGVPGGTAVVLLSATIAAVISFQLGRTLLRQQVEGLLEDNPKFRAIDKAIAKEGFKIILLLRLSPIFPFALSNYLYGVTSVDFMEFMGGTILGFFPGTLLYVYGGTVGKGIMGGEGMALPWYADVAAIVFV 594
L++ V++VE +G LG LYFG Y +AE+L IPA PLT +AG+LFG+ GGT +VLLSA+IAA ISF +GRT LR VEGLLE PKF+A+DKAI KEGFK+ILLLRLSP+FPFALSNYLYGVTSV F+E+ GT+LGF PGT+ YVY G VGK + G A PWY A + +
Sbjct: 156 LENIVSQVETMGNLGFLYFGIFYTIAEILAIPAFPLTCSAGYLFGLQGGTTIVLLSASIAASISFLIGRTALRSYVEGLLEKYPKFKAMDKAIGKEGFKLILLLRLSPLFPFALSNYLYGVTSVRFVEYFWGTLLGFLPGTMAYVYSGDVGKALTLDSGNAQPWYVYAAGLAVI 329
BLAST of mRNA_H-elongata_contig48683.12030.1 vs. uniprot
Match: A0A448YYH2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYH2_9STRA) HSP 1 Score: 215 bits (547), Expect = 7.940e-65 Identity = 111/186 (59.68%), Postives = 136/186 (73.12%), Query Frame = 1
Query: 97 EELGPLGPLYFGGLYVLAEVLIIPALPLTTAAGFLFGVPGGTAVVLLSATIAAVISFQLGRTLLRQQVEGLLEDNPKFRAIDKAIAKEGFKIILLLRLSPIFPFALSNYLYGVTSVDFMEFMGGTILGFFPGTLLYVYGGTVGKGIMGGEGM-ALPWYADVAAIVFVAFLLKTAGDIATSAIEDIE 651
E +GPLG YFG Y +AE+L IPA+PLT +AG+LFG GTAVVLLSA++AA +SF +GRT LR+ VEGLLE+NP+F +DKAI +EGFK++LLLRLSPIFPFALSNYLYG TS++F F GGT+LGF PGT+ YVY G VGK + G G A PWY + A LK D AT + +IE
Sbjct: 206 ESMGPLGVAYFGVAYCIAEILAIPAIPLTASAGYLFGPVQGTAVVLLSASVAAGVSFWIGRTFLREYVEGLLEENPRFGKLDKAIGREGFKLMLLLRLSPIFPFALSNYLYGATSINFSAFFGGTLLGFAPGTIAYVYTGYVGKALTGDAGGDAYPWYVYGGGLALFAAFLKVVADEATRVVREIE 391
BLAST of mRNA_H-elongata_contig48683.12030.1 vs. uniprot
Match: A0A7R9WRQ5_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WRQ5_9STRA) HSP 1 Score: 207 bits (527), Expect = 1.830e-63 Identity = 106/193 (54.92%), Postives = 137/193 (70.98%), Query Frame = 1
Query: 73 LKSSVAKVEELGPLGPLYFGGLYVLAEVLIIPALPLTTAAGFLFGVPGGTAVVLLSATIAAVISFQLGRTLLRQQVEGLLEDNPKFRAIDKAIAKEGFKIILLLRLSPIFPFALSNYLYGVTSVDFMEFMGGTILGFFPGTLLYVYGGTVGKGIMGGEGMALPWYADVAAIVFVAFLLKTAGDIATSAIEDIE 651
L+ V V +GPLG +YFG Y +AE+L IPA+PLT +AG+LFG GT VVL+SA+IAA ISF +GRTLLR VEG+L+D PKF IDKAI KEGFK++ LLRLSP+FPFALSNYLYG +S++F F GT+LGF PGT+ YVY G VGK + PWY V + ++ L+K D AT +++++
Sbjct: 73 LERVVDAVASMGPLGAVYFGVAYTIAEILAIPAIPLTASAGYLFGPVQGTGVVLVSASIAAAISFLIGRTLLRDYVEGVLQDFPKFAKIDKAIGKEGFKLMFLLRLSPVFPFALSNYLYGASSINFSAFFWGTLLGFAPGTMAYVYTGYVGKALTTEGSEVYPWYFYVGGLALLSGLIKVLADTATRIVDELD 265
BLAST of mRNA_H-elongata_contig48683.12030.1 vs. uniprot
Match: K0R4C6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R4C6_THAOC) HSP 1 Score: 201 bits (511), Expect = 4.100e-60 Identity = 102/177 (57.63%), Postives = 129/177 (72.88%), Query Frame = 1
Query: 121 LYFGGLYVLAEVLIIPALPLTTAAGFLFGVPGGTAVVLLSATIAAVISFQLGRTLLRQQVEGLLEDNPKFRAIDKAIAKEGFKIILLLRLSPIFPFALSNYLYGVTSVDFMEFMGGTILGFFPGTLLYVYGGTVGKGIMGGEGMALPWYADVAAIVFVAFLLKTAGDIATSAIEDIE 651
LYFG YVLAE+L IPA PLT A+G+LFG GTA L SA IAA +SF +G+TLLR VE +L++NPKFR++D+AI KEGFK+++LLRLSP+FPFALSNYLYG +S+ F + GTILGF PGT YVYGG +GK + G A PWY + + L+K GD+ATS I+ +E
Sbjct: 167 LYFGIFYVLAEILAIPAFPLTAASGYLFGAFPGTATCLFSAAIAASVSFVIGKTLLRGYVEDVLDENPKFRSMDRAIEKEGFKLMVLLRLSPLFPFALSNYLYGASSIRFPSYFFGTILGFAPGTFAYVYGGVIGKELTVGGDSAQPWYVYAGGMAVIVGLIKVIGDVATSVIDAME 343 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48683.12030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig48683.12030.1 >prot_H-elongata_contig48683.12030.1 ID=prot_H-elongata_contig48683.12030.1|Name=mRNA_H-elongata_contig48683.12030.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=224bp ASFGAVLEIAKGSPSAATAAVQGFLKSSVAKVEELGPLGPLYFGGLYVLAback to top mRNA from alignment at H-elongata_contig48683:2028..3774+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig48683.12030.1 ID=mRNA_H-elongata_contig48683.12030.1|Name=mRNA_H-elongata_contig48683.12030.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1747bp|location=Sequence derived from alignment at H-elongata_contig48683:2028..3774+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig48683:2028..3774+ >mRNA_H-elongata_contig48683.12030.1 ID=mRNA_H-elongata_contig48683.12030.1|Name=mRNA_H-elongata_contig48683.12030.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1344bp|location=Sequence derived from alignment at H-elongata_contig48683:2028..3774+ (Himanthalia elongata Himel1 dioecious)back to top |