mRNA_H-elongata_contig4868.12029.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4868.12029.1
Unique NamemRNA_H-elongata_contig4868.12029.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig4868.12029.1 vs. uniprot
Match: D7FZ10_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ10_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 1.640e-53
Identity = 104/203 (51.23%), Postives = 140/203 (68.97%), Query Frame = 3 
Query:  291 AFCERYQIEFCIGATMFWIVGGKDGATSLLKKYVLDTEKSSGGNEHLLVEWLWLAFVIGRLVGLLDLQYVVNIPRLHRQLTILFLCGAAGAVAVLVFEGSKIVLWAGVAAYGLSNGPLCGYSSELYNRVAIHSDTGVAMVVFGMNTG-SMMPYVISWVWDETVWPPSLFVILAASHLVPLWLILNSRRVAESKENKDMSECET 896
            AF  RY+IEF I   +F ++GGK GAT+ L+ YV DT+     +  LL+  LW A  IGRL GL D +++  +PRL+R  TILFLCGAA A A+LVF+ S  VLW G+AAYGL NGP  GY  +L NRV + S+ G+++V+FG+N G S++PYVISWVWD T WP +L VI+  SHL+P  L+LN++R+ E+ + K   E  T
Sbjct:  263 AFYRRYKIEFHISGMVFCLIGGKVGATAYLESYVDDTDVIDESHAELLIVVLWTAITIGRLAGLQDQRHL-TLPRLYRHSTILFLCGAAAAAAILVFQSSAFVLWTGIAAYGLYNGPTVGYCYDLNNRVTMPSEMGMSVVMFGLNFGASIVPYVISWVWDYTDWPETLIVIIMLSHLLPYPLMLNAKRIDEANKRKLREEAIT 464
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BLAST of mRNA_H-elongata_contig4868.12029.1 vs. uniprot
Match: D7G4N2_ECTSI (Similar to sodium-dependent glucose transporter 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4N2_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 2.480e-44
Identity = 88/195 (45.13%), Postives = 126/195 (64.62%), Query Frame = 3 
Query:  294 FCERYQIEFCIGATMFWIVGGKDGATSLLKKYVLDTEKSSGGNEHLLVEWLWLAFVIGRLVGLLDLQYVVNIPRLHRQLTILFLCGAAGAVAVLVFEGSKIVLWAGVAAYGLSNGPLCGYSSELYNRVAIHSDTGVAMVVFGMNTG-SMMPYVISWVWDETVWPPSLFVILAASHLVPLWLILNSRRVAESKENK 875
            F  +Y+IEF I   +FW+  G+ GA   LK+YV +TE     +  LLV  LW+A +IGRL G+ D +++  + RL+R  TILFL G   A A+LVF+ S  VLW G+AAYGL +GP  GY  +L NR+A  S+ G ++ + G N G S+ PYVISWVWD T WP  L +++  SHL+P   +LN++R+ E+ + +
Sbjct:  210 FFLKYKIEFHISGMLFWLFSGEVGAAGYLKRYVDETEVIGESHAELLVVVLWMAIIIGRLAGIQDQRHL-TLSRLYRHSTILFLGGTTAATAILVFQNSAFVLWTGIAAYGLCDGPTVGYCYDLNNRMATPSEMGTSVAMLGQNFGASIAPYVISWVWDYTDWPQILILVILLSHLLPYPFMLNAKRIDEANKRR 403
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BLAST of mRNA_H-elongata_contig4868.12029.1 vs. uniprot
Match: A0A836CPE2_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPE2_9STRA)

HSP 1 Score: 165 bits (418), Expect = 4.270e-41
Identity = 87/194 (44.85%), Postives = 118/194 (60.82%), Query Frame = 3 
Query:  276 GSRWRAFCERYQIEFCIGATMFWIVGGKDGATSLLKKYVLDTEKSSGGNEHLLVEWLWLAFVIGRLVGLLDLQYVVNIPRLHRQLTILFLCGAAGAVAVLVFEGSKIVLWAGVAAYGLSNGPLCGYSSELYNRVAIHSDTGVAMVVFGMNTGS-MMPYVISWVWDETVWPPSLFVILAASHLVPLWLILNSRRV 854
            GS  R F   Y+IEF IG  +FW++GGK GAT+ L +YV DT         LL+  LWLA  +GR++G+   Q  + + +LH+Q   LF+ GAA A   LV   S   LW  VA YG  NGP  GY  +L NR+   S+TG+++V+FG+N GS  +P+ IS +WD T WP  LFV L  SHL+P   +L +RR+
Sbjct:  244 GSGLRGFVYLYRIEFTIGFMIFWLIGGKVGATAYLTQYVADTGIIPDARAPLLIAVLWLAITVGRILGI-QAQRTITLSKLHKQCAGLFIGGAAAAALPLVLLHSAAALWIAVALYGTLNGPCVGYCYDLNNRITFPSETGMSIVMFGLNCGSSFIPFAISGLWDATQWPSILFVFLVVSHLLPFPALLTARRL 436
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BLAST of mRNA_H-elongata_contig4868.12029.1 vs. uniprot
Match: H6WBB1_VAULI (Uncharacterized protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBB1_VAULI)

HSP 1 Score: 146 bits (369), Expect = 2.200e-34
Identity = 79/194 (40.72%), Postives = 117/194 (60.31%), Query Frame = 3 
Query:  294 FCERYQIEFCIGATMFWIVGGKDGATSLLKKYVLDTEKSSGGNEHLLVEWLWLAFVIGRLVGLLDLQYVVNIPRLHRQLTILFLCGAAGAVAVLVFEGSKIVLWAGVAAYGLSNGPLCGYSSELYNRVAIHSDTGVAMVVFGMNTG-SMMPYVISWVWDETVWPPSLFVILAASHLVPL--WLILNSRRVAESK 866
            F   Y+IEFC+G  +FW++GGK GAT+ L +YV DT+  S      L+  LW+A  +GRL G+  +Q  + + RL     I FL GA GA   L+ + S + LW  VA YG  NGP  G+  +L NR  +  +TG+++V+FG+N G S +P+ IS +WD+   P  LF+++ ASHL+P    LI+ S   ++ K
Sbjct:  254 FVHNYRIEFCVGFMVFWLIGGKVGATAYLTQYVSDTDIISESQSAGLIAVLWMAITVGRLFGI-HIQRNIILSRLFFLTGIAFLGGAVGAFLPLILKTSILALWLSVAIYGFLNGPTVGFCYDLNNRTTMPCETGMSIVMFGLNCGASFIPFAISGIWDKFHTPSILFIVMVASHLLPYPAMLIMKSFHASQIK 446
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BLAST of mRNA_H-elongata_contig4868.12029.1 vs. uniprot
Match: A0A835ZG03_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG03_9STRA)

HSP 1 Score: 122 bits (305), Expect = 4.240e-26
Identity = 74/201 (36.82%), Postives = 106/201 (52.74%), Query Frame = 3 
Query:  294 FCERYQIEFCIGATMFWIVGGKDGATSLLKKYVLDTEKSSGGNEHLLVEWLWLAFVIGRLVGLLDLQYVVNIPRLHRQLTILFLCGAAGAVAVLVFEGSKIVLWAGVAAYGLSNGPLCGYSSELYNRVAIHSDTGVAMVVFGMNTG-SMMPYVISWVWDETV---------WPPSLFVILAASHLVPLWLILNSRRVAESK 866
            F   Y+IE  +   +FW++GGK GAT+ L +YV DT   +     LL+  LW A  +GR VG+  LQ       L+ Q T+L + GAA A   L+F  S  VLW  VA +GL NGP  GY  +L NR    S+ G+++V+FG+N+G S++PY ++  W                +LF     SH +PL  +L  R +   K
Sbjct:  218 FVHEYRIELLVAFMVFWLIGGKVGATAYLTQYVEDTGVIAPACASLLIVVLWAAITLGRCVGI-HLQRDATPRALYAQTTLLCVAGAAAAALPLLFPSSAAVLWIAVALWGLFNGPSIGYCYDLNNRATAPSEVGMSVVMFGLNSGASLVPYALAAAWRGAAAAAGXXXXXXXRALFAFALVSHALPLPALLAVRALHRRK 417
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4868.12029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FZ10_ECTSI1.640e-5351.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G4N2_ECTSI2.480e-4445.13Similar to sodium-dependent glucose transporter 1 ... [more]
A0A836CPE2_9STRA4.270e-4144.85Major facilitator superfamily domain-containing pr... [more]
H6WBB1_VAULI2.200e-3440.72Uncharacterized protein n=1 Tax=Vaucheria litorea ... [more]
A0A835ZG03_9STRA4.240e-2636.82Major facilitator superfamily domain-containing pr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4868contigH-elongata_contig4868:8857..11176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1977
Cds size771
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4868.12029.1prot_H-elongata_contig4868.12029.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4868 9881..10994 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930801.5704362-UTR-H-elongata_contig4868:8856..98801622930801.5704362-UTR-H-elongata_contig4868:8856..9880Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4868 8857..9880 -
1691679576.1291752-UTR-H-elongata_contig4868:8856..98801691679576.1291752-UTR-H-elongata_contig4868:8856..9880Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4868 8857..9880 -
1622930801.6283042-UTR-H-elongata_contig4868:10994..111761622930801.6283042-UTR-H-elongata_contig4868:10994..11176Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4868 10995..11176 -
1691679576.175454-UTR-H-elongata_contig4868:10994..111761691679576.175454-UTR-H-elongata_contig4868:10994..11176Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4868 10995..11176 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930801.5867796-CDS-H-elongata_contig4868:9880..104741622930801.5867796-CDS-H-elongata_contig4868:9880..10474Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4868 9881..10474 -
1691679576.1432014-CDS-H-elongata_contig4868:9880..104741691679576.1432014-CDS-H-elongata_contig4868:9880..10474Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4868 9881..10474 -
1622930801.6013913-CDS-H-elongata_contig4868:10817..109941622930801.6013913-CDS-H-elongata_contig4868:10817..10994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4868 10818..10994 -
1691679576.1533701-CDS-H-elongata_contig4868:10817..109941691679576.1533701-CDS-H-elongata_contig4868:10817..10994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4868 10818..10994 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4868.12029.1

>prot_H-elongata_contig4868.12029.1 ID=prot_H-elongata_contig4868.12029.1|Name=mRNA_H-elongata_contig4868.12029.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=257bp
MPLEIHTLCMQEIPEPVTMPTFQGGLKIRTIGSRWRAFCERYQIEFCIGA
TMFWIVGGKDGATSLLKKYVLDTEKSSGGNEHLLVEWLWLAFVIGRLVGL
LDLQYVVNIPRLHRQLTILFLCGAAGAVAVLVFEGSKIVLWAGVAAYGLS
NGPLCGYSSELYNRVAIHSDTGVAMVVFGMNTGSMMPYVISWVWDETVWP
PSLFVILAASHLVPLWLILNSRRVAESKENKDMSECETSTCLSDSEETGL
LDAIPE*
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mRNA from alignment at H-elongata_contig4868:8857..11176-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4868.12029.1 ID=mRNA_H-elongata_contig4868.12029.1|Name=mRNA_H-elongata_contig4868.12029.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2320bp|location=Sequence derived from alignment at H-elongata_contig4868:8857..11176- (Himanthalia elongata Himel1 dioecious)
ATCACCTCAATCACATGATCGAAACGAGTCGTGGCGGCGGCCTCAAGAAA
GTCTGCCGGAGCCGGACAACCGGCAAGGACTCCTGTATGGCACTATCACT
TATACGTGGAAATCATTTTGAAACTCCTTGCCTGAAGCTGGGCCAGTGGT
TTGTCGGATCGTAAGTGCAGTGCGTCGACGGCATGCCTCTCGAAATACAC
ACACTCTGCATGCAGGAGATTCCCGAACCGGTGACGATGCCCACATTTCA
AGGGGGGCTCAAGATAAGGACAATAGGGAGCCGGTGGCGGGCGTTCTGCG
AGAGGTACCAGATCGAGTTCTGCATCGGCGCCACGATGTTTTGGATCGTT
GGTGGCAAGGTGAGAGCTCAACGAGATCATTTGTGTCGACCGCCTACGTA
GCAAGTCACGGGTGCAGGGGTGCTTCACAAACAACATGCGACTTCAGGGA
GATCCGCCGTCTGTATGTTGTGCGCATTCGCCTATTCCTATCGATGGGAA
GGAAAGACCGTCATCTTCGGTCAAACGTATCGCAAGTAAGCGTCAAGAAT
GAGCGTGACCGCTGCTTTGAGCCACGCCACGTCTCTGGTCTCGAGGCAGA
CCTCTCTTCCCTCTACTGAATTGGAGGGTTCCAAGAATAGTTTGTGCTCC
TGTAAACTACCCCCGAAAAAATATCGCCCTCGATGCTGCTCGTGTTTCGA
AGGACGGGGCGACTTCGCTCCTCAAGAAGTACGTACTCGACACCGAAAAA
TCAAGTGGTGGAAACGAACACCTGCTCGTGGAGTGGTTGTGGCTCGCCTT
CGTCATAGGGCGACTGGTCGGTCTGCTCGACCTTCAGTACGTCGTCAACA
TTCCTCGCCTCCATCGGCAGCTTACAATCTTGTTCTTGTGCGGAGCTGCG
GGGGCGGTTGCGGTACTCGTTTTCGAAGGGTCGAAGATCGTCCTCTGGGC
GGGAGTCGCCGCGTACGGTCTCTCCAACGGGCCGCTCTGCGGCTACTCCA
GCGAACTGTACAACCGCGTGGCCATTCACTCCGACACGGGGGTGGCGATG
GTGGTATTCGGGATGAACACTGGCTCAATGATGCCGTATGTCATCTCGTG
GGTGTGGGACGAGACCGTCTGGCCTCCGTCCCTCTTCGTCATATTGGCGG
CGTCGCACCTCGTGCCCCTCTGGCTGATACTGAACTCTCGGCGCGTGGCG
GAGTCGAAGGAGAACAAGGACATGTCGGAGTGCGAAACGTCAACATGCTT
GTCTGATTCCGAGGAGACTGGTCTGCTGGATGCCATACCGGAATGATCGA
TGGCGTAGAAAGACTCGTACTCGTTTCCCCCCGCTTGCGCGTCACGCCAT
CAGGAAGCTTCGCCGTGTATACGCGATCCCATACAAGAAGTCACCGGCGC
TGACGTCTTTAATTATCGCGCTCGCTGTTTCTCTGGCTCGAGAGAAATAG
ACTCTACGCGCCCTATATGCAATGGGATACACGCGATGCGAAGGCGAACG
ACGGGTGAGATGCTCTACAAGGGAACGGTAGAGTGTGTAATTTCAAGTGA
CACGGCTGCGCCACGGCGTTTTTTTGCATCCTTTTTCGTTGTTTGCAGCC
TGGATGTCCATTTTTTTACTGTACTGTCTGTTTTGTTTTTGAGTGTGCGC
CTCCCTTGATTATATGGCATGTCTAATGTTATGGCCAGCGCTAATGCCAA
TAATATAAGTTGTTCATGAAACAATTAAATTAGCACTTCTTCTGTCCTTG
TTCTTTAAAAAAAAATGAACTCGTTCAAACCCTCCGAATATCCAACACCT
TTAGTTACCATTCATAGGACGGGTTCGATGAATATTATCCCCAGGGGGGG
AGCAACTATTGGGGTTGTTCAACTCGTCGCCCGAGCAGTCTTACACGTAC
CCACGCAAATTGCTTACTTGTATAGTATAATAGTACTAAAGTAAGATGTT
TGATCCTGTAGTATGAAGTAAGATGTTTTGACTTTTTTATGGCATCTTTC
GCGGTATTAGTGGCTTGGAATCAGTGCTAAAACGCGAGGACGGGAGGAAG
CAAAGTTAGACCATTTGTTGACGTGCAGGAGCGCTGAACTTACATTGCGA
TAAAAAAATCATAGGGAGGCGTTAACTAACCGGGGAGAGGGAGATATGGG
CTAATCCCTGAGGGCGACAGGCGGTAGGGGTGGTGAGGCAACGTTGTAAT
AGGTAGGATTGGTAACCTAGTACTTTGAATAATGGTATAATTAACATACT
ATATGTGTGGATGTTCGGAGGGTTGGAATGAGTTCAAGTTTTTTTTAATA
AAAATGCTATACCCCATCAG
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Coding sequence (CDS) from alignment at H-elongata_contig4868:8857..11176-

>mRNA_H-elongata_contig4868.12029.1 ID=mRNA_H-elongata_contig4868.12029.1|Name=mRNA_H-elongata_contig4868.12029.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1542bp|location=Sequence derived from alignment at H-elongata_contig4868:8857..11176- (Himanthalia elongata Himel1 dioecious)
ATGCCTCTCGAAATACACACACTCTGCATGCAGGAGATTCCCGAACCGGT
GACGATGCCCACATTTCAAGGGGGGCTCAAGATAAGGACAATAGGGAGCC
GGTGGCGGGCGTTCTGCGAGAGGTACCAGATCGAGTTCTGCATCGGCGCC
ACGATGTTTTGGATCGTTGGTGGCAAGATGCCTCTCGAAATACACACACT
CTGCATGCAGGAGATTCCCGAACCGGTGACGATGCCCACATTTCAAGGGG
GGCTCAAGATAAGGACAATAGGGAGCCGGTGGCGGGCGTTCTGCGAGAGG
TACCAGATCGAGTTCTGCATCGGCGCCACGATGTTTTGGATCGTTGGTGG
CAAGGACGGGGCGACTTCGCTCCTCAAGAAGTACGTACTCGACACCGAAA
AATCAAGTGGTGGAAACGAACACCTGCTCGTGGAGTGGTTGTGGCTCGCC
TTCGTCATAGGGCGACTGGTCGGTCTGCTCGACCTTCAGTACGTCGTCAA
CATTCCTCGCCTCCATCGGCAGCTTACAATCTTGTTCTTGTGCGGAGCTG
CGGGGGCGGTTGCGGTACTCGTTTTCGAAGGGTCGAAGATCGTCCTCTGG
GCGGGAGTCGCCGCGTACGGTCTCTCCAACGGGCCGCTCTGCGGCTACTC
CAGCGAACTGTACAACCGCGTGGCCATTCACTCCGACACGGGGGTGGCGA
TGGTGGTATTCGGGATGAACACTGGCTCAATGATGCCGTATGTCATCTCG
TGGGTGTGGGACGAGACCGTCTGGCCTCCGTCCCTCTTCGTCATATTGGC
GGCGTCGCACCTCGTGCCCCTCTGGCTGATACTGAACTCTCGGCGCGTGG
CGGAGTCGAAGGAGAACAAGGACATGTCGGAGTGCGAAACGTCAACATGC
TTGTCTGATTCCGAGGAGACTGGTCTGCTGGATGCCATACCGGAATGAGA
CGGGGCGACTTCGCTCCTCAAGAAGTACGTACTCGACACCGAAAAATCAA
GTGGTGGAAACGAACACCTGCTCGTGGAGTGGTTGTGGCTCGCCTTCGTC
ATAGGGCGACTGGTCGGTCTGCTCGACCTTCAGTACGTCGTCAACATTCC
TCGCCTCCATCGGCAGCTTACAATCTTGTTCTTGTGCGGAGCTGCGGGGG
CGGTTGCGGTACTCGTTTTCGAAGGGTCGAAGATCGTCCTCTGGGCGGGA
GTCGCCGCGTACGGTCTCTCCAACGGGCCGCTCTGCGGCTACTCCAGCGA
ACTGTACAACCGCGTGGCCATTCACTCCGACACGGGGGTGGCGATGGTGG
TATTCGGGATGAACACTGGCTCAATGATGCCGTATGTCATCTCGTGGGTG
TGGGACGAGACCGTCTGGCCTCCGTCCCTCTTCGTCATATTGGCGGCGTC
GCACCTCGTGCCCCTCTGGCTGATACTGAACTCTCGGCGCGTGGCGGAGT
CGAAGGAGAACAAGGACATGTCGGAGTGCGAAACGTCAACATGCTTGTCT
GATTCCGAGGAGACTGGTCTGCTGGATGCCATACCGGAATGA
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