mRNA_H-elongata_contig48655.12027.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48655.12027.1
Unique NamemRNA_H-elongata_contig48655.12027.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig48655.12027.1 vs. uniprot
Match: D8LMN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN4_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 8.620e-26
Identity = 43/68 (63.24%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 PDTVDYQVKELTDGNRVAVFFMCKQRDNGSNMGRRFANSSLFIKLIARECHRFGVTYSMPLQPITVGK 204
            PDTVD+Q+K LTDGNR++VF +C+QR+N +NMGRRF NSSLF KL+AREC+R G++Y++P QP+   K
Sbjct:  116 PDTVDFQIKGLTDGNRLSVFVLCQQRENSANMGRRFGNSSLFHKLLARECNRHGISYTLPAQPLVAQK 183
[Close]
BLAST of mRNA_H-elongata_contig48655.12027.1 vs. uniprot
Match: A0A6H5JSR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR3_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.060e-24
Identity = 44/69 (63.77%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 PDTVDYQVKELTDGNRVAVFFMCKQRDNGSNMGRRFANSSLFIKLIARECHRFGVTYSMPLQPITVGKG 207
            PDTVDYQ+K LTDGNR++VF +C+QR+N +NMGRRF NS+LF KL+AREC+R G++Y++P QP+   KG
Sbjct:  942 PDTVDYQIKGLTDGNRLSVFVVCQQRENSANMGRRFGNSNLFHKLLARECNRHGISYTLPAQPLVAQKG 1010
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48655.12027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMN4_ECTSI8.620e-2663.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSR3_9PHAE1.060e-2463.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48655contigH-elongata_contig48655:176..388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue6.6e-20
Seed eggNOG ortholog2880.D8LMN4
KEGG koko:K02575,ko:K22048
KEGG TC1.A.23.4,2.A.1.8
KEGG Pathwayko00910,map00910
KEGG ModuleM00615
EggNOG free text desc.mechanosensitive ion channel activity
EggNOG OGsCOG0668@1,KOG4629@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930801.4393563-CDS-H-elongata_contig48655:175..3881622930801.4393563-CDS-H-elongata_contig48655:175..388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48655 176..388 +
1691679576.0655892-CDS-H-elongata_contig48655:175..3881691679576.0655892-CDS-H-elongata_contig48655:175..388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48655 176..388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48655.12027.1prot_H-elongata_contig48655.12027.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48655 176..388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48655.12027.1

>prot_H-elongata_contig48655.12027.1 ID=prot_H-elongata_contig48655.12027.1|Name=mRNA_H-elongata_contig48655.12027.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
PDTVDYQVKELTDGNRVAVFFMCKQRDNGSNMGRRFANSSLFIKLIAREC
HRFGVTYSMPLQPITVGKGDV
back to top

mRNA from alignment at H-elongata_contig48655:176..388+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48655.12027.1 ID=mRNA_H-elongata_contig48655.12027.1|Name=mRNA_H-elongata_contig48655.12027.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig48655:176..388+ (Himanthalia elongata Himel1 dioecious)
CCAGATACCGTCGACTATCAAGTAAAGGAGCTAACGGACGGCAACCGTGT
GGCAGTTTTCTTCATGTGCAAACAGAGAGACAACGGCAGCAACATGGGTC
GGCGCTTCGCCAATTCGAGCCTTTTCATTAAGCTTATCGCCAGAGAGTGC
CATAGATTTGGCGTCACCTATTCGATGCCACTGCAGCCGATCACCGTTGG
CAAAGGTGATGTA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig48655:176..388+

>mRNA_H-elongata_contig48655.12027.1 ID=mRNA_H-elongata_contig48655.12027.1|Name=mRNA_H-elongata_contig48655.12027.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig48655:176..388+ (Himanthalia elongata Himel1 dioecious)
CCAGATACCGTCGACTATCAAGTAAAGGAGCTAACGGACGGCAACCGTGT
GGCAGTTTTCTTCATGTGCAAACAGAGAGACAACGGCAGCAACATGGGTC
GGCGCTTCGCCAATTCGAGCCTTTTCATTAAGCTTATCGCCAGAGAGTGC
CATAGATTTGGCGTCACCTATTCGATGCCACTGCAGCCGATCACCGTTGG
CAAAGGTGATGTACCAGATACCGTCGACTATCAAGTAAAGGAGCTAACGG
ACGGCAACCGTGTGGCAGTTTTCTTCATGTGCAAACAGAGAGACAACGGC
AGCAACATGGGTCGGCGCTTCGCCAATTCGAGCCTTTTCATTAAGCTTAT
CGCCAGAGAGTGCCATAGATTTGGCGTCACCTATTCGATGCCACTGCAGC
CGATCACCGTTGGCAAAGGTGATGTA
back to top