mRNA_H-elongata_contig48643.12023.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48643.12023.1
Unique NamemRNA_H-elongata_contig48643.12023.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48643.12023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48643contigH-elongata_contig48643:85..1199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue4.7e-19
Seed eggNOG ortholog2880.D7FI63
EggNOG OGs2D0G2@1,2SE3H@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size516
Cds size516
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48643.12023.1prot_H-elongata_contig48643.12023.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48643 85..1199 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930801.0395834-CDS-H-elongata_contig48643:84..1611622930801.0395834-CDS-H-elongata_contig48643:84..161Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48643 85..161 +
1691679575.9044614-CDS-H-elongata_contig48643:84..1611691679575.9044614-CDS-H-elongata_contig48643:84..161Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48643 85..161 +
1622930801.0527732-CDS-H-elongata_contig48643:293..4551622930801.0527732-CDS-H-elongata_contig48643:293..455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48643 294..455 +
1691679575.9139128-CDS-H-elongata_contig48643:293..4551691679575.9139128-CDS-H-elongata_contig48643:293..455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48643 294..455 +
1622930801.0668461-CDS-H-elongata_contig48643:727..8081622930801.0668461-CDS-H-elongata_contig48643:727..808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48643 728..808 +
1691679575.9234307-CDS-H-elongata_contig48643:727..8081691679575.9234307-CDS-H-elongata_contig48643:727..808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48643 728..808 +
1622930801.0847595-CDS-H-elongata_contig48643:1003..11991622930801.0847595-CDS-H-elongata_contig48643:1003..1199Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48643 1004..1199 +
1691679575.9307284-CDS-H-elongata_contig48643:1003..11991691679575.9307284-CDS-H-elongata_contig48643:1003..1199Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48643 1004..1199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48643.12023.1

>prot_H-elongata_contig48643.12023.1 ID=prot_H-elongata_contig48643.12023.1|Name=mRNA_H-elongata_contig48643.12023.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=172bp
GRFCRACYNDVDVAMAADTTEDRAIMCDTGEPVTMYATRQLRTKDTTDAS
HTGRKLQRWKENQKWKTTEKWQGNDDTEAKWKTSAKWQGNDDTEPKWKTT
QKYKTNVCLDGCETDSGSEARICDPSCETGELYGDLGCNTEDGLYGRYCR
ACYNDVDVAMAADTNEDRAIM*
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mRNA from alignment at H-elongata_contig48643:85..1199+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48643.12023.1 ID=mRNA_H-elongata_contig48643.12023.1|Name=mRNA_H-elongata_contig48643.12023.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1115bp|location=Sequence derived from alignment at H-elongata_contig48643:85..1199+ (Himanthalia elongata Himel1 dioecious)
GGACGCTTCTGTCGCGCCTGCTACAACGATGTCGATGTCGCTATGGCCGC
CGACACGACCGAGGACCGCGCCATCATGTGAGAGCGGAATCGCGTCGTTC
TTCTCCGGACGATTGTCGAAGACCGCCCTGTATTCCTCTAACACCTACTA
GACCGTTATCTTTTACAGATAGTGATTCCGTTCTTCTCCACCGCCCATAC
ATTGGACAGGTGTGACACTGGAGAGCCGGTGACCATGTACGCTACCCGCC
AACTTCGTACCAAAGACACCACGGACGCGTCTCATACTGGTCGCAAGCTC
CAGCGGTGGAAGGAGAACCAGAAGTGGAAGACTACCGAGAAGTGGCAGGG
CAACGATGACACAGAGGCCAAGTACGTACGGGTTGTACTCTTACCAAAAT
AAAGTGATATTCGGCTCTTTTTTATGACCACGATGTATGTTCGGTGTGTG
ATACCCTTTTGGGAGTGAAAAATACGGGACAGAGCACACGCCGTGCGGTG
GTGACGCCCGGCTCGGTAGTATCTCGAGTAATACGTACGGTGGTTGGGGC
GAATATCGACTTCGAGGTTCGTATCCCGGCCAGGCGTCAACATCTGCCGT
TTTTCCGACCCTATACCCCACTCTCTTCGCTACTTCCATATAGGTGGAAG
ACCAGCGCAAAGTGGCAGGGTAACGACGATACCGAGCCCAAGTGGAAGAC
AACCCAGAAGTACAAGACCAACGTGTGAGTAATGTCCGCCGTCTTTCCGT
CCCGTCTCGACCCGGCGTAGGTCAAAGAAAGCATGTCGTGACGCATATCT
CCTCCGTGAGGTGTCCAGCACGGTGACTCCAAACTCTATCTCGACCAGTC
ATGACCAATCCCGATCGCTTTCTCACTAGCATAATATCATATACTGATCT
ACCTGTACTCGTTGTTCAGGTGCCTGGACGGCTGCGAGACCGACAGCGGC
TCTGAAGCACGCATCTGCGACCCCTCGTGCGAGACGGGAGAGCTCTACGG
AGACCTCGGCTGCAACACCGAGGACGGCTTGTATGGACGCTACTGTCGCG
CCTGCTACAACGATGTCGATGTCGCTATGGCCGCCGACACGAACGAGGAC
CGCGCCATCATGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig48643:85..1199+

>mRNA_H-elongata_contig48643.12023.1 ID=mRNA_H-elongata_contig48643.12023.1|Name=mRNA_H-elongata_contig48643.12023.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1032bp|location=Sequence derived from alignment at H-elongata_contig48643:85..1199+ (Himanthalia elongata Himel1 dioecious)
GGACGCTTCTGTCGCGCCTGCTACAACGATGTCGATGTCGCTATGGCCGC
CGACACGACCGAGGACCGCGCCATCATGGACGCTTCTGTCGCGCCTGCTA
CAACGATGTCGATGTCGCTATGGCCGCCGACACGACCGAGGACCGCGCCA
TCATGTGTGACACTGGAGAGCCGGTGACCATGTACGCTACCCGCCAACTT
CGTACCAAAGACACCACGGACGCGTCTCATACTGGTCGCAAGCTCCAGCG
GTGGAAGGAGAACCAGAAGTGGAAGACTACCGAGAAGTGGCAGGGCAACG
ATGACACAGAGGCCAAGTGTGACACTGGAGAGCCGGTGACCATGTACGCT
ACCCGCCAACTTCGTACCAAAGACACCACGGACGCGTCTCATACTGGTCG
CAAGCTCCAGCGGTGGAAGGAGAACCAGAAGTGGAAGACTACCGAGAAGT
GGCAGGGCAACGATGACACAGAGGCCAAGTGGAAGACCAGCGCAAAGTGG
CAGGGTAACGACGATACCGAGCCCAAGTGGAAGACAACCCAGAAGTACAA
GACCAACGTGTGGAAGACCAGCGCAAAGTGGCAGGGTAACGACGATACCG
AGCCCAAGTGGAAGACAACCCAGAAGTACAAGACCAACGTGTGCCTGGAC
GGCTGCGAGACCGACAGCGGCTCTGAAGCACGCATCTGCGACCCCTCGTG
CGAGACGGGAGAGCTCTACGGAGACCTCGGCTGCAACACCGAGGACGGCT
TGTATGGACGCTACTGTCGCGCCTGCTACAACGATGTCGATGTCGCTATG
GCCGCCGACACGAACGAGGACCGCGCCATCATGTGAGTGCCTGGACGGCT
GCGAGACCGACAGCGGCTCTGAAGCACGCATCTGCGACCCCTCGTGCGAG
ACGGGAGAGCTCTACGGAGACCTCGGCTGCAACACCGAGGACGGCTTGTA
TGGACGCTACTGTCGCGCCTGCTACAACGATGTCGATGTCGCTATGGCCG
CCGACACGAACGAGGACCGCGCCATCATGTGA
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