mRNA_H-elongata_contig48597.12019.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48597.12019.1
Unique NamemRNA_H-elongata_contig48597.12019.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48597.12019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48597contigH-elongata_contig48597:1260..1562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size305
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930800.2118506-CDS-H-elongata_contig48597:1259..15621622930800.2118506-CDS-H-elongata_contig48597:1259..1562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48597 1260..1562 +
1691679575.7610269-CDS-H-elongata_contig48597:1259..15621691679575.7610269-CDS-H-elongata_contig48597:1259..1562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48597 1260..1562 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48597.12019.1prot_H-elongata_contig48597.12019.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48597 1260..1562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48597.12019.1

>prot_H-elongata_contig48597.12019.1 ID=prot_H-elongata_contig48597.12019.1|Name=mRNA_H-elongata_contig48597.12019.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
PSILQLSAVEAEEVRGEIGDEKGVGTRSSGAMTVSRWVKSTATGPANSIE
GGSTANGARRTRYGAAHACAPCLLPPYLTKRNSPTKVSLVGDSKAFRLLL
*
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mRNA from alignment at H-elongata_contig48597:1260..1562+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48597.12019.1 ID=mRNA_H-elongata_contig48597.12019.1|Name=mRNA_H-elongata_contig48597.12019.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=303bp|location=Sequence derived from alignment at H-elongata_contig48597:1260..1562+ (Himanthalia elongata Himel1 dioecious)
CCTTCCATCCTTCAACTCAGCGCCGTCGAAGCTGAAGAGGTTCGGGGTGA
GATTGGGGATGAAAAGGGTGTGGGGACAAGAAGCAGCGGGGCAATGACGG
TATCGCGTTGGGTTAAATCGACTGCTACTGGGCCTGCCAACAGCATCGAA
GGAGGGTCAACGGCCAATGGTGCCCGGCGAACACGATACGGTGCTGCGCA
TGCGTGTGCCCCTTGTCTCCTCCCTCCTTACCTGACAAAGCGAAACAGCC
CCACAAAAGTCAGCCTGGTCGGCGACTCTAAAGCATTTCGCCTTTTACTC
TAA
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Coding sequence (CDS) from alignment at H-elongata_contig48597:1260..1562+

>mRNA_H-elongata_contig48597.12019.1 ID=mRNA_H-elongata_contig48597.12019.1|Name=mRNA_H-elongata_contig48597.12019.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig48597:1260..1562+ (Himanthalia elongata Himel1 dioecious)
CCTTCCATCCTTCAACTCAGCGCCGTCGAAGCTGAAGAGGTTCGGGGTGA
GATTGGGGATGAAAAGGGTGTGGGGACAAGAAGCAGCGGGGCAATGACGG
TATCGCGTTGGGTTAAATCGACTGCTACTGGGCCTGCCAACAGCATCGAA
GGAGGGTCAACGGCCAATGGTGCCCGGCGAACACGATACGGTGCTGCGCA
TGCGTGTGCCCCTTGTCTCCTCCCTCCTTACCTGACAAAGCGAAACAGCC
CCACAAAAGTCAGCCTGGTCGGCGACTCTAAAGCATTTCGCCTTTTACTC
TAACCTTCCATCCTTCAACTCAGCGCCGTCGAAGCTGAAGAGGTTCGGGG
TGAGATTGGGGATGAAAAGGGTGTGGGGACAAGAAGCAGCGGGGCAATGA
CGGTATCGCGTTGGGTTAAATCGACTGCTACTGGGCCTGCCAACAGCATC
GAAGGAGGGTCAACGGCCAATGGTGCCCGGCGAACACGATACGGTGCTGC
GCATGCGTGTGCCCCTTGTCTCCTCCCTCCTTACCTGACAAAGCGAAACA
GCCCCACAAAAGTCAGCCTGGTCGGCGACTCTAAAGCATTTCGCCTTTTA
CTCTAA
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