mRNA_H-elongata_contig48573.12018.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48573.12018.1
Unique NamemRNA_H-elongata_contig48573.12018.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig48573.12018.1 vs. uniprot
Match: A0A6H5HYD7_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5HYD7_9HYME)

HSP 1 Score: 73.2 bits (178), Expect = 2.190e-12
Identity = 43/129 (33.33%), Postives = 62/129 (48.06%), Query Frame = 1
Query:   28 DARDERGMTPLLAAVWRGTPSTVSHLVTRLGDDNMFSNQCTVTGMTCLHLAAERRTTVSQGDSAADMLAFLFKTFSGREGFPAVDTRDKQGCSALHVACMYGDVEAARCLLRHGADPTAATENRSTPLH 414
            DAR   G TPLL A++ G  + V  L+ R    N+ +++    G TCLH+   R       D   +M   LF+    +     VD +D +G + LH A   G++     LLR GA P  A  ++ TPLH
Sbjct:  486 DARKNDGWTPLLEAIYNGKINLVEILLRRSACPNLVNDK----GQTCLHIICRR------DDDEENMAKMLFEICDEKHQMVQVDAQDNEGWTPLHEAIFNGNMNLVEILLRRGASPNVADNDKFTPLH 604          
BLAST of mRNA_H-elongata_contig48573.12018.1 vs. uniprot
Match: A0A6H5IDK1_9HYME (Gelsolin-like domain-containing protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IDK1_9HYME)

HSP 1 Score: 66.2 bits (160), Expect = 5.920e-10
Identity = 46/138 (33.33%), Postives = 62/138 (44.93%), Query Frame = 1
Query:    1 NKYDQAMMHDARDERGMTPLLAAVWRGTPSTVSHLVTRLGDDNMFSNQCTVTGMTCLHLAAERRTTVSQGDSAADMLAFLFKTFSGREGFPAVDTRDKQGCSALHVACMYGDVEAARCLLRHGADPTAATENRSTPLH 414
            ++  Q +  DARD  G TPL AA++ G  + V  L+ R  + N+        G T LH    R       D   +M   LF     +     VD RD +G + L VA   G +     LLR GA P  A +N+ TPLH
Sbjct:  716 DEIHQIVEVDARDNEGWTPLHAAIFNGNINLVEVLLRRGANPNLADKS----GYTPLHFVCLRE------DDDDNMAKMLFAICEEKHQTVQVDARDNEGRTPLLVAIHNGKINLVEFLLRRGARPDLADDNKVTPLH 843          
BLAST of mRNA_H-elongata_contig48573.12018.1 vs. uniprot
Match: A0A6H5IYV3_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IYV3_9HYME)

HSP 1 Score: 64.7 bits (156), Expect = 1.960e-9
Identity = 49/132 (37.12%), Postives = 63/132 (47.73%), Query Frame = 1
Query:   28 DARDERGMTPLLAAVWRGTPSTVSHLVTRLGDDNMFSNQCTVTGMTCLHLAAERRTTVSQGDSAADMLAFLFKTFSGREGFPA--VDTRDKQGCSALHVACMYGD-VEAARCLLRHGADPTAATENRSTPLH 414
            DARD+ G T L  A+  G  +    L+ R  D N+ +++    G T LH   +R    S+ D     L    +   GR+      VD R+K G + LH A   G  V   R LLR GADP AA E  STPLH
Sbjct:  541 DARDKLGNTALHVALHHGKEAVTESLLRRDADPNLANDE----GSTPLHFICQR----SEEDDDRGWLERFLEIVDGRDARKTLRVDARNKLGRTPLHYAVADGHKVRIIRELLRRGADPNAADEEGSTPLH 664          
BLAST of mRNA_H-elongata_contig48573.12018.1 vs. uniprot
Match: A0A7S1ND89_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1ND89_9EUGL)

HSP 1 Score: 63.2 bits (152), Expect = 3.500e-9
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1
Query:  268 FPAVDTRDKQGCSALHVACMYGDVEAARCLLRHGADPTAATENRSTPLH 414
            F  ++TRD QGC+ALH A  +G +E AR L+RHGAD  A + + STPLH
Sbjct:  172 FADINTRDAQGCTALHHAAEHGQIEMARTLIRHGADTNAPSSDESTPLH 220          
BLAST of mRNA_H-elongata_contig48573.12018.1 vs. uniprot
Match: A0A6H5IVG2_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IVG2_9HYME)

HSP 1 Score: 62.0 bits (149), Expect = 1.780e-8
Identity = 43/134 (32.09%), Postives = 65/134 (48.51%), Query Frame = 1
Query:   13 QAMMHDARDERGMTPLLAAVWRGTPSTVSHLVTRLGDDNMFSNQCTVTGMTCLHLAAERRTTVSQGDSAADMLAFLFKTFSGREGFPAVDTRDKQGCSALHVACMYGDVEAARCLLRHGADPTAATENRSTPLH 414
            Q +  +AR++ G+TPL ++V       V  L+ R  D N+  N     G+T LH+    + +V+Q +   D +   F      +    VD +D  G + L+ A     ++ A  LLR GA P  A  NRSTPLH
Sbjct:  782 QKIQVNARNKLGITPLHSSVDHNNRHLVEFLLKRGADPNVVDNY----GLTPLHIILASKESVTQNED--DFVEVFFNINDEIQQTVQVDVQDHAGRTPLNYALRCKHLKTAEYLLRRGAKPGLADNNRSTPLH 909          
BLAST of mRNA_H-elongata_contig48573.12018.1 vs. uniprot
Match: A0A6H5HZY6_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5HZY6_9HYME)

HSP 1 Score: 60.5 bits (145), Expect = 5.890e-8
Identity = 44/144 (30.56%), Postives = 64/144 (44.44%), Query Frame = 1
Query:    1 NKYDQAMMHDARDERGMTPLLAAV------WRGTPSTVSHLVTRLGDDNMFSNQCTVTGMTCLHLAAERRTTVSQGDSAADMLAFLFKTFSGREGFPAVDTRDKQGCSALHVACMYGDVEAARCLLRHGADPTAATENRSTPLH 414
            +K  Q +  DARD  G TPL  A+       R T +    L+    + N+ +++    G TCLH+   R       D   +M   LF+    +     VD +D +G + LH A   G++     LLR GA P  A  N+ T LH
Sbjct:  206 DKKHQMVEIDARDNEGWTPLHRALDQDLRRSRLTKNLAELLLRWDANPNLVNDK----GQTCLHIICRR------DDDDKNMAKMLFEMCDEKHQMVQVDAQDNEGRTPLHEAIFNGNINLIEILLRKGASPNLADNNKLTLLH 339          
BLAST of mRNA_H-elongata_contig48573.12018.1 vs. uniprot
Match: A0A6H5IZY6_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IZY6_9HYME)

HSP 1 Score: 60.1 bits (144), Expect = 8.300e-8
Identity = 40/129 (31.01%), Postives = 58/129 (44.96%), Query Frame = 1
Query:   28 DARDERGMTPLLAAVWRGTPSTVSHLVTRLGDDNMFSNQCTVTGMTCLHLAAERRTTVSQGDSAADMLAFLFKTFSGREGFPAVDTRDKQGCSALHVACMYGDVEAARCLLRHGADPTAATENRSTPLH 414
            DA+D  G TPL  A++ G  + V  L+ R  + N+  +     G T LH+   R         A D+    F+          VD +D +G + LH A   G++     LLR GA P  A  ++ TPLH
Sbjct:  575 DAQDNEGQTPLHKAIFNGNINLVEILMRRGANPNLADDN----GYTPLHILCLREY------DAVDLAKRFFEIGKEFNKPVKVDAQDNEGWTPLHEAIFNGNINLVEILLRRGASPNLADNDKLTPLH 693          
BLAST of mRNA_H-elongata_contig48573.12018.1 vs. uniprot
Match: A0A6H5IQ39_9HYME (Uncharacterized protein n=2 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IQ39_9HYME)

HSP 1 Score: 59.7 bits (143), Expect = 1.080e-7
Identity = 44/125 (35.20%), Postives = 56/125 (44.80%), Query Frame = 1
Query:   40 ERGMTPLLAAVWRGTPSTVSHLVTRLGDDNMFSNQCTVTGMTCLHLAAERRTTVSQGDSAADMLAFLFKTFSGREGFPAVDTRDKQGCSALHVACMYGDVEAARCLLRHGADPTAATENRSTPLH 414
            E G TPLL A+     S V   + R G D   +N+    G T LH+       +S+    AD    LF     +     VD RDK G + L+ A   G  +    LLR GADP  A E+R  PLH
Sbjct:  183 ETGDTPLLLALSNVARSDVVESLLRGGADPNLANE---EGKTPLHV-------ISRKHYIADFADLLFDLLEEKNQLLRVDARDKDGRTPLYWALYNGHEKLVESLLRKGADPNLADEDRDAPLH 297          
BLAST of mRNA_H-elongata_contig48573.12018.1 vs. uniprot
Match: A0A6H5IRQ0_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IRQ0_9HYME)

HSP 1 Score: 59.7 bits (143), Expect = 1.110e-7
Identity = 44/125 (35.20%), Postives = 56/125 (44.80%), Query Frame = 1
Query:   40 ERGMTPLLAAVWRGTPSTVSHLVTRLGDDNMFSNQCTVTGMTCLHLAAERRTTVSQGDSAADMLAFLFKTFSGREGFPAVDTRDKQGCSALHVACMYGDVEAARCLLRHGADPTAATENRSTPLH 414
            E G TPLL A+     S V   + R G D   +N+    G T LH+       +S+    AD    LF     +     VD RDK G + L+ A   G  +    LLR GADP  A E+R  PLH
Sbjct:  248 ETGDTPLLLALSNVARSDVVESLLRGGADPNLANE---EGKTPLHV-------ISRKHYIADFADLLFDLLEEKNQLLRVDARDKDGRTPLYWALYNGHEKLVESLLRKGADPNLADEDRDAPLH 362          
BLAST of mRNA_H-elongata_contig48573.12018.1 vs. uniprot
Match: A0A6H5IX98_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IX98_9HYME)

HSP 1 Score: 59.7 bits (143), Expect = 1.120e-7
Identity = 44/125 (35.20%), Postives = 56/125 (44.80%), Query Frame = 1
Query:   40 ERGMTPLLAAVWRGTPSTVSHLVTRLGDDNMFSNQCTVTGMTCLHLAAERRTTVSQGDSAADMLAFLFKTFSGREGFPAVDTRDKQGCSALHVACMYGDVEAARCLLRHGADPTAATENRSTPLH 414
            E G TPLL A+     S V   + R G D   +N+    G T LH+       +S+    AD    LF     +     VD RDK G + L+ A   G  +    LLR GADP  A E+R  PLH
Sbjct:  548 ETGDTPLLLALSNVARSDVVESLLRGGADPNLANE---EGKTPLHV-------ISRKHYIADFADLLFDLLEEKNQLLRVDARDKDGRTPLYWALYNGHEKLVESLLRKGADPNLADEDRDAPLH 662          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48573.12018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5HYD7_9HYME2.190e-1233.33Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A6H5IDK1_9HYME5.920e-1033.33Gelsolin-like domain-containing protein n=1 Tax=Tr... [more]
A0A6H5IYV3_9HYME1.960e-937.12Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A7S1ND89_9EUGL3.500e-955.10Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A6H5IVG2_9HYME1.780e-832.09Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A6H5HZY6_9HYME5.890e-830.56Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A6H5IZY6_9HYME8.300e-831.01Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A6H5IQ39_9HYME1.080e-735.20Uncharacterized protein n=2 Tax=Trichogramma brass... [more]
A0A6H5IRQ0_9HYME1.110e-735.20Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A6H5IX98_9HYME1.120e-735.20Uncharacterized protein n=1 Tax=Trichogramma brass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48573contigH-elongata_contig48573:3032..3445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue7.5e-17
Seed eggNOG ortholog2880.D7FGT9
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size414
Cds size396
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930800.1267345-CDS-H-elongata_contig48573:3031..34271622930800.1267345-CDS-H-elongata_contig48573:3031..3427Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48573 3032..3427 -
1691679575.7398949-CDS-H-elongata_contig48573:3031..34271691679575.7398949-CDS-H-elongata_contig48573:3031..3427Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48573 3032..3427 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930800.1429257-UTR-H-elongata_contig48573:3427..34451622930800.1429257-UTR-H-elongata_contig48573:3427..3445Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48573 3428..3445 -
1691679575.753046-UTR-H-elongata_contig48573:3427..34451691679575.753046-UTR-H-elongata_contig48573:3427..3445Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48573 3428..3445 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48573.12018.1prot_H-elongata_contig48573.12018.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48573 3032..3427 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48573.12018.1

>prot_H-elongata_contig48573.12018.1 ID=prot_H-elongata_contig48573.12018.1|Name=mRNA_H-elongata_contig48573.12018.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
MMHDARDERGMTPLLAAVWRGTPSTVSHLVTRLGDDNMFSNQCTVTGMTC
LHLAAERRTTVSQGDSAADMLAFLFKTFSGREGFPAVDTRDKQGCSALHV
ACMYGDVEAARCLLRHGADPTAATENRSTPLH
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mRNA from alignment at H-elongata_contig48573:3032..3445-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48573.12018.1 ID=mRNA_H-elongata_contig48573.12018.1|Name=mRNA_H-elongata_contig48573.12018.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=414bp|location=Sequence derived from alignment at H-elongata_contig48573:3032..3445- (Himanthalia elongata Himel1 dioecious)
AACAAGTACGACCAGGCCATGATGCATGATGCTCGGGACGAACGCGGTAT GACGCCACTCCTCGCGGCGGTGTGGCGAGGCACCCCGAGCACGGTGTCCC ATCTCGTGACGAGGCTCGGTGATGACAACATGTTCTCTAATCAATGCACA GTTACCGGGATGACATGCCTTCATCTAGCGGCAGAGCGTCGGACGACCGT CTCTCAGGGCGATTCCGCGGCAGACATGCTGGCTTTTCTCTTCAAAACAT TTTCGGGAAGGGAAGGTTTCCCAGCCGTGGACACACGCGACAAGCAGGGC TGCTCGGCTCTCCACGTAGCCTGCATGTACGGTGACGTGGAAGCCGCGAG GTGCTTACTGAGACACGGAGCTGACCCAACCGCGGCGACGGAAAACAGAT CGACGCCCTTACAT
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Coding sequence (CDS) from alignment at H-elongata_contig48573:3032..3445-

>mRNA_H-elongata_contig48573.12018.1 ID=mRNA_H-elongata_contig48573.12018.1|Name=mRNA_H-elongata_contig48573.12018.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig48573:3032..3445- (Himanthalia elongata Himel1 dioecious)
ATGATGCATGATGCTCGGGACGAACGCGGTATGACGCCACTCCTCGCGGC
GGTGTGGCGAGGCACCCCGAGCACGGTGTCCCATCTCGTGACGAGGCTCG
GTGATGACAACATGTTCTCTAATCAATGCACAGTTACCGGGATGACATGC
CTTCATCTAGCGGCAGAGCGTCGGACGACCGTCTCTCAGGGCGATTCCGC
GGCAGACATGCTGGCTTTTCTCTTCAAAACATTTTCGGGAAGGGAAGGTT
TCCCAGCCGTGGACACACGCGACAAGCAGGGCTGCTCGGCTCTCCACGTA
GCCTGCATGTACGGTGACGTGGAAGCCGCGAGGTGCTTACTGAGACACGG
AGCTGACCCAACCGCGGCGACGGAAAACAGATCGACGCCCTTACATATGA
TGCATGATGCTCGGGACGAACGCGGTATGACGCCACTCCTCGCGGCGGTG
TGGCGAGGCACCCCGAGCACGGTGTCCCATCTCGTGACGAGGCTCGGTGA
TGACAACATGTTCTCTAATCAATGCACAGTTACCGGGATGACATGCCTTC
ATCTAGCGGCAGAGCGTCGGACGACCGTCTCTCAGGGCGATTCCGCGGCA
GACATGCTGGCTTTTCTCTTCAAAACATTTTCGGGAAGGGAAGGTTTCCC
AGCCGTGGACACACGCGACAAGCAGGGCTGCTCGGCTCTCCACGTAGCCT
GCATGTACGGTGACGTGGAAGCCGCGAGGTGCTTACTGAGACACGGAGCT
GACCCAACCGCGGCGACGGAAAACAGATCGACGCCCTTACAT
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