mRNA_H-elongata_contig48549.12013.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig48549.12013.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN) HSP 1 Score: 239 bits (611), Expect = 2.270e-68 Identity = 132/304 (43.42%), Postives = 182/304 (59.87%), Query Frame = 1
Query: 13 PREDTPEVRRQRAGKLAHERGGITKAASALMSPPAAPQDNKTLTILRSKHPAEDPAEITTGKAQAEQRAGTNAVGE---QMQQQPDA-----------------------------ALCDELVEDLAEFSTLVFSSSLLPQIFSTLNTSANLSALGQKARRVPCGDVLRRVIGAVFCRRYGRKLVDYFQPWGQYGVAVSGGVEIMTLTSILGFEEGCSILSYDGANAFNSMYRHRVLPALAEIIPSGVPYAANLYARESPKLLFALDGGGVEVVESARGVQQGCNLGPLCYSTGPLKILKEIRS 828
PR+ + RA LAH+RGG++KAAS L++PP+ P++ +TL LR KHP E EI +A R G + ++P A +L EL E +A+ +++F S LP F L+TSANLSA+G K R + GD+ RR++G V CR+YG L ++F+P GQYGVAV GG E++ + L ++G +L+YD NAFNSM R +LPALA++IP +PYA N+YARE PKLL+ D G+ V+ SA GVQQGCNLGPLCYS G LK+L++ R+
Sbjct: 1073 PRQGEEASKHARAEHLAHQRGGLSKAASTLLAPPSPPRNAETLETLRKKHPGESQQEIAEACCEATARLSRPPPGVSRIEAVEEPFATETVTATIRRGNPQGSPGPSGLRFSLLQSSLTPELCEAIAKLCSVIFDGSHLPDSFWQLHTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLLYKTDS-GMAVIPSATGVQQGCNLGPLCYSAGLLKLLRDFRA 1375
BLAST of mRNA_H-elongata_contig48549.12013.1 vs. uniprot
Match: A0A6H5KQ62_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ62_9PHAE) HSP 1 Score: 209 bits (532), Expect = 7.030e-62 Identity = 132/305 (43.28%), Postives = 173/305 (56.72%), Query Frame = 1
Query: 22 DTPEVRRQRAGKLAHERGGITKAASALMSPPAAPQDNKTLTILRSKHPAEDPAEITTGKAQAEQRAGT-------NAVGE-------------------QMQQQPDA---------ALCDELVEDLAEFSTLVFS-SSLLPQIFSTLNTSANLSALGQKARRVPCGDVLRRVIGAVFCRRYGRKLVDYFQPWGQYGVAVSGGVEIMTLTSILGFEEGCSILSYDGANAFNSMYRHRVLPALAEIIPSGVPYAANLYARESPKLLFALDGGGVEVVESARGVQQGCNLGPLCYSTGPLKILKEIRS 828
DT + R++RA +LAHE GGITKAASAL+SP +P++N TL LR+ HP EDP +I T + + AG ++V E Q PD + D E LA+FS VF LP F L+TSANLSALG+K R + G VLRR+I FCR+Y + + F+ Q+G V GGVEI+ T+ L ++G +ILS+DG NA+NSM R +LPA+A P V Y N+YAR KLLF ++ G +EVV S RGVQQGCNLG + G L I+KE +
Sbjct: 36 DTEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIETHKIDSVAEPDEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNN 340
BLAST of mRNA_H-elongata_contig48549.12013.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE) HSP 1 Score: 207 bits (527), Expect = 5.120e-59 Identity = 131/305 (42.95%), Postives = 172/305 (56.39%), Query Frame = 1
Query: 22 DTPEVRRQRAGKLAHERGGITKAASALMSPPAAPQDNKTLTILRSKHPAEDPAEITTGKAQAEQRAGT-------NAVGE-------------------QMQQQPDA---------ALCDELVEDLAEFSTLVFS-SSLLPQIFSTLNTSANLSALGQKARRVPCGDVLRRVIGAVFCRRYGRKLVDYFQPWGQYGVAVSGGVEIMTLTSILGFEEGCSILSYDGANAFNSMYRHRVLPALAEIIPSGVPYAANLYARESPKLLFALDGGGVEVVESARGVQQGCNLGPLCYSTGPLKILKEIRS 828
DT + R++RA +LAHE GGITKAASAL+SP +P++N TL LR+ HP EDP +I T + + AG ++V E Q PD + D E LA+FS VF LP F L+TSANLSALG+K R + G VLRR+I FC +Y + + F+ Q+G V GGVEI+ T+ L ++G +ILS+DG NA+NSM R +LPA+A P V Y N+YAR KLLF ++ G +EVV S RGVQQGCNLG + G L I+KE +
Sbjct: 36 DTEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCHQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNN 340
BLAST of mRNA_H-elongata_contig48549.12013.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE) HSP 1 Score: 209 bits (532), Expect = 1.880e-58 Identity = 132/305 (43.28%), Postives = 173/305 (56.72%), Query Frame = 1
Query: 22 DTPEVRRQRAGKLAHERGGITKAASALMSPPAAPQDNKTLTILRSKHPAEDPAEITTGKAQAEQRAGT-------NAVGE-------------------QMQQQPDA---------ALCDELVEDLAEFSTLVFS-SSLLPQIFSTLNTSANLSALGQKARRVPCGDVLRRVIGAVFCRRYGRKLVDYFQPWGQYGVAVSGGVEIMTLTSILGFEEGCSILSYDGANAFNSMYRHRVLPALAEIIPSGVPYAANLYARESPKLLFALDGGGVEVVESARGVQQGCNLGPLCYSTGPLKILKEIRS 828
DT + R++RA +LAHE GGITKAASAL+SP +P++N TL LR+ HP EDP +I T + + AG ++V E Q PD + D E LA+FS VF LP F L+TSANLSALG+K R + G VLRR+I FCR+Y + + F+ Q+G V GGVEI+ T+ L ++G +ILS+DG NA+NSM R +LPA+A P V Y N+YAR KLLF ++ G +EVV S RGVQQGCNLG + G L I+KE +
Sbjct: 36 DTEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNN 340
BLAST of mRNA_H-elongata_contig48549.12013.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE) HSP 1 Score: 209 bits (533), Expect = 4.770e-58 Identity = 132/305 (43.28%), Postives = 173/305 (56.72%), Query Frame = 1
Query: 22 DTPEVRRQRAGKLAHERGGITKAASALMSPPAAPQDNKTLTILRSKHPAEDPAEITTGKAQAEQRAGT-------NAVGE-------------------QMQQQPDA---------ALCDELVEDLAEFSTLVFS-SSLLPQIFSTLNTSANLSALGQKARRVPCGDVLRRVIGAVFCRRYGRKLVDYFQPWGQYGVAVSGGVEIMTLTSILGFEEGCSILSYDGANAFNSMYRHRVLPALAEIIPSGVPYAANLYARESPKLLFALDGGGVEVVESARGVQQGCNLGPLCYSTGPLKILKEIRS 828
DT + R++RA +LAHE GGITKAASAL+SP +P++N TL LR+ HP EDP +I T + + AG ++V E Q PD + D E LA+FS VF LP F L+TSANLSALG+K R + G VLRR+I FCR+Y + + F+ Q+G V GGVEI+ T+ L ++G +ILS+DG NA+NSM R +LPA+A P V Y N+YAR KLLF ++ G +EVV S RGVQQGCNLG + G L I+KE +
Sbjct: 36 DTEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKVAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDSFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNN 340
BLAST of mRNA_H-elongata_contig48549.12013.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE) HSP 1 Score: 167 bits (423), Expect = 8.070e-45 Identity = 90/188 (47.87%), Postives = 117/188 (62.23%), Query Frame = 1
Query: 268 LCDELVEDLAEFSTLVFS-SSLLPQIFSTLNTSANLSALGQKARRVPCGDVLRRVIGAVFCRRYGRKLVDYFQPWGQYGVAVSGGVEIMTLTSILGFEEGCSILSYDGANAFNSMYRHRVLPALAEIIPSGVPYAANLYARESPKLLFALDGGGVEVVESARGVQQGCNLGPLCYSTGPLKILKEIRS 828
+ D E LA+FS VF LP F L+TSANLSALG+K R + G VLRR+I FCR+Y + + F+ Q+G V GGVEI+ T+ L ++G +ILS+DG NA+NSM R +LPA+A P Y N+YAR KLLF ++ G +EVV S RGVQQGCNLG + G L I+KE +
Sbjct: 1 MSDYFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLAKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNN 188
BLAST of mRNA_H-elongata_contig48549.12013.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE) HSP 1 Score: 165 bits (417), Expect = 1.930e-42 Identity = 89/188 (47.34%), Postives = 117/188 (62.23%), Query Frame = 1
Query: 268 LCDELVEDLAEFSTLVFS-SSLLPQIFSTLNTSANLSALGQKARRVPCGDVLRRVIGAVFCRRYGRKLVDYFQPWGQYGVAVSGGVEIMTLTSILGFEEGCSILSYDGANAFNSMYRHRVLPALAEIIPSGVPYAANLYARESPKLLFALDGGGVEVVESARGVQQGCNLGPLCYSTGPLKILKEIRS 828
+ D E LA+FS VF LP L+TSANLSALG+K R + G VLRR+I F R+Y + + F+ Q+G V GGVEI+ T+ L ++G +ILS+DG NA+NSM R +LPA+A + P V Y N+YAR KLLF ++ G +EVV S RGVQQGCNLG + G L I+KE +
Sbjct: 1 MSDSFTETLADFSFKVFYYGDELPDFLWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFYRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATLTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNN 188
BLAST of mRNA_H-elongata_contig48549.12013.1 vs. uniprot
Match: A0A6H5L3H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H3_9PHAE) HSP 1 Score: 141 bits (356), Expect = 3.090e-38 Identity = 77/166 (46.39%), Postives = 104/166 (62.65%), Query Frame = 1
Query: 268 LCDELVEDLAEFSTLVFS-SSLLPQIFSTLNTSANLSALGQKARRVPCGDVLRRVIGAVFCRRYGRKLVDYFQPWGQYGVAVSGGVEIMTLTSILGFEEGCSILSYDGANAFNSMYRHRVLPALAEIIPSGVPYAANLYARESPKLLFALDGGGVEVVESARGVQQ 762
+ D+ E LA+FS VF LP +F TSA+LSALG+K R + G VLRR+I FCR+Y + + D F+ Q+G V GGVEI+ T+ L ++G +ILS+DG NA+NS+ R +L A+A P V Y NLYAR KLLF ++ G +E+V S R VQQ
Sbjct: 1 MSDDFSETLADFSYKVFYYGDELPDLFWGFQTSASLSALGEKKRPIAVGGVLRRIISGSFCRQYKQGIADIFEASNQFGGGVPGGVEIVASTAALSHQQGSTILSFDGRNAYNSILRSSILTAVATHTPHLVKYFGNLYARIKAKLLFKMEDGSIEMVRSQREVQQ 166
BLAST of mRNA_H-elongata_contig48549.12013.1 vs. uniprot
Match: A0A6H5KQE6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE6_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 8.680e-21 Identity = 56/137 (40.88%), Postives = 80/137 (58.39%), Query Frame = 1
Query: 268 LCDELVEDLAEFSTLVFS-SSLLPQIFSTLNTSANLSALGQKARRVPCGDVLRRVI------------GAVFCRRYGRKLVDYFQPWGQYGVAVSGGVEIMTLTSILGFEEGCSILSYDGANAFNSMYRHRVLPALA 639
+ D+ LA+FS VF LP +F L+TSA+LSALG+K R + G VLRR+I FCR+Y + + D F+ Q+G V GGVEI+ T+ ++G +ILS+DG NA+NS+ R +L A+A
Sbjct: 1 MSDDFSATLADFSHKVFYYGDELPDLFWGLHTSASLSALGEKKRPIAVGGVLRRIIXIXXXXXXXXXISGSFCRQYKQGIADIFEASNQFGGGVPGGVEIVASTAAPSHQQGSTILSFDGKNAYNSILRSSILTAVA 137
BLAST of mRNA_H-elongata_contig48549.12013.1 vs. uniprot
Match: A0A1D1VL73_RAMVA (Reverse transcriptase domain-containing protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1VL73_RAMVA) HSP 1 Score: 70.5 bits (171), Expect = 4.680e-10 Identity = 61/192 (31.77%), Postives = 89/192 (46.35%), Query Frame = 1
Query: 274 DELVEDLAEFSTLVFSSSLLPQIFSTLNTSANLSALGQK---ARRVPCGDVLRRVIGAVFCRRYGRKLVDYFQPWGQYGVAVSGGVEIMTLTSILGFEEGCS----ILSYDGANAFNSMYRHRVLPALAEIIPSGVPYAANLYARESPKLLFALDGGGVEVVESARGVQQGCNLGPLCYSTGPLKILKEIRS 828
+EL E LA T++ S + I L A+L+AL +K R + G LRR+ G + +R + + +P Q G GG E + L + +L D NAFN++YR R+L + E +P A LY R L F G +++ SAR VQQG LGPL + K+ K + S
Sbjct: 258 NELTEALAGLMTIMLSGKVPADICPFLY-GASLTALKKKDGGIRPIAVGSTLRRIAGKIVSKRVMLSMGELLRP-EQVGYGTRGGAEAAVHAARLFVSSNTNDCQVLLKLDFKNAFNTVYRERLLSEVRETLPDYYASAHQLY-RHPSNLFF-----GEKLLSSARCVQQGDPLGPLFFCHVTRKLSKSLVS 441 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48549.12013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig48549.12013.1 >prot_H-elongata_contig48549.12013.1 ID=prot_H-elongata_contig48549.12013.1|Name=mRNA_H-elongata_contig48549.12013.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=276bp SRQKPREDTPEVRRQRAGKLAHERGGITKAASALMSPPAAPQDNKTLTILback to top mRNA from alignment at H-elongata_contig48549:271..1245+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig48549.12013.1 ID=mRNA_H-elongata_contig48549.12013.1|Name=mRNA_H-elongata_contig48549.12013.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=975bp|location=Sequence derived from alignment at H-elongata_contig48549:271..1245+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig48549:271..1245+ >mRNA_H-elongata_contig48549.12013.1 ID=mRNA_H-elongata_contig48549.12013.1|Name=mRNA_H-elongata_contig48549.12013.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1656bp|location=Sequence derived from alignment at H-elongata_contig48549:271..1245+ (Himanthalia elongata Himel1 dioecious)back to top |