mRNA_H-elongata_contig48549.12013.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48549.12013.1
Unique NamemRNA_H-elongata_contig48549.12013.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig48549.12013.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 239 bits (611), Expect = 2.270e-68
Identity = 132/304 (43.42%), Postives = 182/304 (59.87%), Query Frame = 1
Query:   13 PREDTPEVRRQRAGKLAHERGGITKAASALMSPPAAPQDNKTLTILRSKHPAEDPAEITTGKAQAEQRAGTNAVGE---QMQQQPDA-----------------------------ALCDELVEDLAEFSTLVFSSSLLPQIFSTLNTSANLSALGQKARRVPCGDVLRRVIGAVFCRRYGRKLVDYFQPWGQYGVAVSGGVEIMTLTSILGFEEGCSILSYDGANAFNSMYRHRVLPALAEIIPSGVPYAANLYARESPKLLFALDGGGVEVVESARGVQQGCNLGPLCYSTGPLKILKEIRS 828
            PR+     +  RA  LAH+RGG++KAAS L++PP+ P++ +TL  LR KHP E   EI     +A  R      G    +  ++P A                             +L  EL E +A+  +++F  S LP  F  L+TSANLSA+G K R +  GD+ RR++G V CR+YG  L ++F+P GQYGVAV GG E++   + L  ++G  +L+YD  NAFNSM R  +LPALA++IP  +PYA N+YARE PKLL+  D  G+ V+ SA GVQQGCNLGPLCYS G LK+L++ R+
Sbjct: 1073 PRQGEEASKHARAEHLAHQRGGLSKAASTLLAPPSPPRNAETLETLRKKHPGESQQEIAEACCEATARLSRPPPGVSRIEAVEEPFATETVTATIRRGNPQGSPGPSGLRFSLLQSSLTPELCEAIAKLCSVIFDGSHLPDSFWQLHTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLLYKTDS-GMAVIPSATGVQQGCNLGPLCYSAGLLKLLRDFRA 1375          
BLAST of mRNA_H-elongata_contig48549.12013.1 vs. uniprot
Match: A0A6H5KQ62_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ62_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 7.030e-62
Identity = 132/305 (43.28%), Postives = 173/305 (56.72%), Query Frame = 1
Query:   22 DTPEVRRQRAGKLAHERGGITKAASALMSPPAAPQDNKTLTILRSKHPAEDPAEITTGKAQAEQRAGT-------NAVGE-------------------QMQQQPDA---------ALCDELVEDLAEFSTLVFS-SSLLPQIFSTLNTSANLSALGQKARRVPCGDVLRRVIGAVFCRRYGRKLVDYFQPWGQYGVAVSGGVEIMTLTSILGFEEGCSILSYDGANAFNSMYRHRVLPALAEIIPSGVPYAANLYARESPKLLFALDGGGVEVVESARGVQQGCNLGPLCYSTGPLKILKEIRS 828
            DT + R++RA +LAHE GGITKAASAL+SP  +P++N TL  LR+ HP EDP +I T    + + AG        ++V E                   Q    PD           + D   E LA+FS  VF     LP  F  L+TSANLSALG+K R +  G VLRR+I   FCR+Y   + + F+   Q+G  V GGVEI+  T+ L  ++G +ILS+DG NA+NSM R  +LPA+A   P  V Y  N+YAR   KLLF ++ G +EVV S RGVQQGCNLG   +  G L I+KE  +
Sbjct:   36 DTEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIETHKIDSVAEPDEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNN 340          
BLAST of mRNA_H-elongata_contig48549.12013.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 5.120e-59
Identity = 131/305 (42.95%), Postives = 172/305 (56.39%), Query Frame = 1
Query:   22 DTPEVRRQRAGKLAHERGGITKAASALMSPPAAPQDNKTLTILRSKHPAEDPAEITTGKAQAEQRAGT-------NAVGE-------------------QMQQQPDA---------ALCDELVEDLAEFSTLVFS-SSLLPQIFSTLNTSANLSALGQKARRVPCGDVLRRVIGAVFCRRYGRKLVDYFQPWGQYGVAVSGGVEIMTLTSILGFEEGCSILSYDGANAFNSMYRHRVLPALAEIIPSGVPYAANLYARESPKLLFALDGGGVEVVESARGVQQGCNLGPLCYSTGPLKILKEIRS 828
            DT + R++RA +LAHE GGITKAASAL+SP  +P++N TL  LR+ HP EDP +I T    + + AG        ++V E                   Q    PD           + D   E LA+FS  VF     LP  F  L+TSANLSALG+K R +  G VLRR+I   FC +Y   + + F+   Q+G  V GGVEI+  T+ L  ++G +ILS+DG NA+NSM R  +LPA+A   P  V Y  N+YAR   KLLF ++ G +EVV S RGVQQGCNLG   +  G L I+KE  +
Sbjct:   36 DTEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCHQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNN 340          
BLAST of mRNA_H-elongata_contig48549.12013.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 1.880e-58
Identity = 132/305 (43.28%), Postives = 173/305 (56.72%), Query Frame = 1
Query:   22 DTPEVRRQRAGKLAHERGGITKAASALMSPPAAPQDNKTLTILRSKHPAEDPAEITTGKAQAEQRAGT-------NAVGE-------------------QMQQQPDA---------ALCDELVEDLAEFSTLVFS-SSLLPQIFSTLNTSANLSALGQKARRVPCGDVLRRVIGAVFCRRYGRKLVDYFQPWGQYGVAVSGGVEIMTLTSILGFEEGCSILSYDGANAFNSMYRHRVLPALAEIIPSGVPYAANLYARESPKLLFALDGGGVEVVESARGVQQGCNLGPLCYSTGPLKILKEIRS 828
            DT + R++RA +LAHE GGITKAASAL+SP  +P++N TL  LR+ HP EDP +I T    + + AG        ++V E                   Q    PD           + D   E LA+FS  VF     LP  F  L+TSANLSALG+K R +  G VLRR+I   FCR+Y   + + F+   Q+G  V GGVEI+  T+ L  ++G +ILS+DG NA+NSM R  +LPA+A   P  V Y  N+YAR   KLLF ++ G +EVV S RGVQQGCNLG   +  G L I+KE  +
Sbjct:   36 DTEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNN 340          
BLAST of mRNA_H-elongata_contig48549.12013.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 4.770e-58
Identity = 132/305 (43.28%), Postives = 173/305 (56.72%), Query Frame = 1
Query:   22 DTPEVRRQRAGKLAHERGGITKAASALMSPPAAPQDNKTLTILRSKHPAEDPAEITTGKAQAEQRAGT-------NAVGE-------------------QMQQQPDA---------ALCDELVEDLAEFSTLVFS-SSLLPQIFSTLNTSANLSALGQKARRVPCGDVLRRVIGAVFCRRYGRKLVDYFQPWGQYGVAVSGGVEIMTLTSILGFEEGCSILSYDGANAFNSMYRHRVLPALAEIIPSGVPYAANLYARESPKLLFALDGGGVEVVESARGVQQGCNLGPLCYSTGPLKILKEIRS 828
            DT + R++RA +LAHE GGITKAASAL+SP  +P++N TL  LR+ HP EDP +I T    + + AG        ++V E                   Q    PD           + D   E LA+FS  VF     LP  F  L+TSANLSALG+K R +  G VLRR+I   FCR+Y   + + F+   Q+G  V GGVEI+  T+ L  ++G +ILS+DG NA+NSM R  +LPA+A   P  V Y  N+YAR   KLLF ++ G +EVV S RGVQQGCNLG   +  G L I+KE  +
Sbjct:   36 DTEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKVAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDSFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNN 340          
BLAST of mRNA_H-elongata_contig48549.12013.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 8.070e-45
Identity = 90/188 (47.87%), Postives = 117/188 (62.23%), Query Frame = 1
Query:  268 LCDELVEDLAEFSTLVFS-SSLLPQIFSTLNTSANLSALGQKARRVPCGDVLRRVIGAVFCRRYGRKLVDYFQPWGQYGVAVSGGVEIMTLTSILGFEEGCSILSYDGANAFNSMYRHRVLPALAEIIPSGVPYAANLYARESPKLLFALDGGGVEVVESARGVQQGCNLGPLCYSTGPLKILKEIRS 828
            + D   E LA+FS  VF     LP  F  L+TSANLSALG+K R +  G VLRR+I   FCR+Y   + + F+   Q+G  V GGVEI+  T+ L  ++G +ILS+DG NA+NSM R  +LPA+A   P    Y  N+YAR   KLLF ++ G +EVV S RGVQQGCNLG   +  G L I+KE  +
Sbjct:    1 MSDYFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLAKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNN 188          
BLAST of mRNA_H-elongata_contig48549.12013.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 1.930e-42
Identity = 89/188 (47.34%), Postives = 117/188 (62.23%), Query Frame = 1
Query:  268 LCDELVEDLAEFSTLVFS-SSLLPQIFSTLNTSANLSALGQKARRVPCGDVLRRVIGAVFCRRYGRKLVDYFQPWGQYGVAVSGGVEIMTLTSILGFEEGCSILSYDGANAFNSMYRHRVLPALAEIIPSGVPYAANLYARESPKLLFALDGGGVEVVESARGVQQGCNLGPLCYSTGPLKILKEIRS 828
            + D   E LA+FS  VF     LP     L+TSANLSALG+K R +  G VLRR+I   F R+Y   + + F+   Q+G  V GGVEI+  T+ L  ++G +ILS+DG NA+NSM R  +LPA+A + P  V Y  N+YAR   KLLF ++ G +EVV S RGVQQGCNLG   +  G L I+KE  +
Sbjct:    1 MSDSFTETLADFSFKVFYYGDELPDFLWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFYRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATLTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNN 188          
BLAST of mRNA_H-elongata_contig48549.12013.1 vs. uniprot
Match: A0A6H5L3H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H3_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 3.090e-38
Identity = 77/166 (46.39%), Postives = 104/166 (62.65%), Query Frame = 1
Query:  268 LCDELVEDLAEFSTLVFS-SSLLPQIFSTLNTSANLSALGQKARRVPCGDVLRRVIGAVFCRRYGRKLVDYFQPWGQYGVAVSGGVEIMTLTSILGFEEGCSILSYDGANAFNSMYRHRVLPALAEIIPSGVPYAANLYARESPKLLFALDGGGVEVVESARGVQQ 762
            + D+  E LA+FS  VF     LP +F    TSA+LSALG+K R +  G VLRR+I   FCR+Y + + D F+   Q+G  V GGVEI+  T+ L  ++G +ILS+DG NA+NS+ R  +L A+A   P  V Y  NLYAR   KLLF ++ G +E+V S R VQQ
Sbjct:    1 MSDDFSETLADFSYKVFYYGDELPDLFWGFQTSASLSALGEKKRPIAVGGVLRRIISGSFCRQYKQGIADIFEASNQFGGGVPGGVEIVASTAALSHQQGSTILSFDGRNAYNSILRSSILTAVATHTPHLVKYFGNLYARIKAKLLFKMEDGSIEMVRSQREVQQ 166          
BLAST of mRNA_H-elongata_contig48549.12013.1 vs. uniprot
Match: A0A6H5KQE6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE6_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 8.680e-21
Identity = 56/137 (40.88%), Postives = 80/137 (58.39%), Query Frame = 1
Query:  268 LCDELVEDLAEFSTLVFS-SSLLPQIFSTLNTSANLSALGQKARRVPCGDVLRRVI------------GAVFCRRYGRKLVDYFQPWGQYGVAVSGGVEIMTLTSILGFEEGCSILSYDGANAFNSMYRHRVLPALA 639
            + D+    LA+FS  VF     LP +F  L+TSA+LSALG+K R +  G VLRR+I               FCR+Y + + D F+   Q+G  V GGVEI+  T+    ++G +ILS+DG NA+NS+ R  +L A+A
Sbjct:    1 MSDDFSATLADFSHKVFYYGDELPDLFWGLHTSASLSALGEKKRPIAVGGVLRRIIXIXXXXXXXXXISGSFCRQYKQGIADIFEASNQFGGGVPGGVEIVASTAAPSHQQGSTILSFDGKNAYNSILRSSILTAVA 137          
BLAST of mRNA_H-elongata_contig48549.12013.1 vs. uniprot
Match: A0A1D1VL73_RAMVA (Reverse transcriptase domain-containing protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1VL73_RAMVA)

HSP 1 Score: 70.5 bits (171), Expect = 4.680e-10
Identity = 61/192 (31.77%), Postives = 89/192 (46.35%), Query Frame = 1
Query:  274 DELVEDLAEFSTLVFSSSLLPQIFSTLNTSANLSALGQK---ARRVPCGDVLRRVIGAVFCRRYGRKLVDYFQPWGQYGVAVSGGVEIMTLTSILGFEEGCS----ILSYDGANAFNSMYRHRVLPALAEIIPSGVPYAANLYARESPKLLFALDGGGVEVVESARGVQQGCNLGPLCYSTGPLKILKEIRS 828
            +EL E LA   T++ S  +   I   L   A+L+AL +K    R +  G  LRR+ G +  +R    + +  +P  Q G    GG E     + L      +    +L  D  NAFN++YR R+L  + E +P     A  LY R    L F     G +++ SAR VQQG  LGPL +     K+ K + S
Sbjct:  258 NELTEALAGLMTIMLSGKVPADICPFLY-GASLTALKKKDGGIRPIAVGSTLRRIAGKIVSKRVMLSMGELLRP-EQVGYGTRGGAEAAVHAARLFVSSNTNDCQVLLKLDFKNAFNTVYRERLLSEVRETLPDYYASAHQLY-RHPSNLFF-----GEKLLSSARCVQQGDPLGPLFFCHVTRKLSKSLVS 441          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48549.12013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6P0N5L4_9CYAN2.270e-6843.42Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
A0A6H5KQ62_9PHAE7.030e-6243.28Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KGJ4_9PHAE5.120e-5942.95Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JCM0_9PHAE1.880e-5843.28Reverse transcriptase domain-containing protein (F... [more]
A0A6H5LN63_9PHAE4.770e-5843.28Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KSY9_9PHAE8.070e-4547.87Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K1H0_9PHAE1.930e-4247.34Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L3H3_9PHAE3.090e-3846.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQE6_9PHAE8.680e-2140.88Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A1D1VL73_RAMVA4.680e-1031.77Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48549contigH-elongata_contig48549:271..1245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue1.7e-10
Seed eggNOG ortholog400682.PAC_15702057
EggNOG free text desc.Ribonuclease H protein
EggNOG OGsKOG1075@1,KOG1075@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size828
Cds size828
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930799.687598-CDS-H-elongata_contig48549:270..5311622930799.687598-CDS-H-elongata_contig48549:270..531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48549 271..531 +
1691679575.4993947-CDS-H-elongata_contig48549:270..5311691679575.4993947-CDS-H-elongata_contig48549:270..531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48549 271..531 +
1622930799.7010503-CDS-H-elongata_contig48549:678..12451622930799.7010503-CDS-H-elongata_contig48549:678..1245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48549 679..1245 +
1691679575.5105932-CDS-H-elongata_contig48549:678..12451691679575.5105932-CDS-H-elongata_contig48549:678..1245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48549 679..1245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48549.12013.1prot_H-elongata_contig48549.12013.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48549 271..1245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48549.12013.1

>prot_H-elongata_contig48549.12013.1 ID=prot_H-elongata_contig48549.12013.1|Name=mRNA_H-elongata_contig48549.12013.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=276bp
SRQKPREDTPEVRRQRAGKLAHERGGITKAASALMSPPAAPQDNKTLTIL
RSKHPAEDPAEITTGKAQAEQRAGTNAVGEQMQQQPDAALCDELVEDLAE
FSTLVFSSSLLPQIFSTLNTSANLSALGQKARRVPCGDVLRRVIGAVFCR
RYGRKLVDYFQPWGQYGVAVSGGVEIMTLTSILGFEEGCSILSYDGANAF
NSMYRHRVLPALAEIIPSGVPYAANLYARESPKLLFALDGGGVEVVESAR
GVQQGCNLGPLCYSTGPLKILKEIRS
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mRNA from alignment at H-elongata_contig48549:271..1245+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48549.12013.1 ID=mRNA_H-elongata_contig48549.12013.1|Name=mRNA_H-elongata_contig48549.12013.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=975bp|location=Sequence derived from alignment at H-elongata_contig48549:271..1245+ (Himanthalia elongata Himel1 dioecious)
AGCCGGCAGAAACCACGGGAAGACACCCCTGAAGTTCGTAGACAGCGAGC AGGAAAGCTAGCGCATGAGCGAGGGGGCATCACGAAGGCCGCAAGCGCCC TAATGTCTCCTCCAGCAGCACCTCAAGACAACAAGACGCTGACAATTCTA CGCAGCAAGCATCCTGCTGAAGACCCTGCGGAAATCACCACAGGCAAAGC CCAGGCTGAACAACGGGCAGGGACAAACGCAGTCGGTGAGCAAATGCAGC AACAGCCGGACGTGGTAATCAAGCTCCTTGATGATGTATTGGGCCAGATT CTGGAAATGGAGAATCTTTTTCAAGAAGCCACGGTGAAAGCCATAACCAA GACGGCCAGCCCACAGAGCGCAGCAGGGCCATCCGGACGACGCTTTAGCC ATCTCCAGGCCGCGCTGTGCGACGAACTAGTTGAGGATCTCGCCGAGTTT TCTACGCTTGTCTTCTCCAGCAGTCTTCTACCTCAAATATTCTCGACATT GAATACAAGCGCTAACCTGTCTGCGTTGGGCCAAAAGGCGAGACGGGTCC CGTGTGGTGACGTCCTCCGAAGAGTTATTGGAGCCGTTTTCTGCCGCAGA TACGGCAGAAAACTTGTAGACTACTTCCAGCCTTGGGGCCAGTATGGTGT TGCAGTGTCTGGTGGGGTAGAGATTATGACCCTAACATCCATATTAGGTT TCGAAGAGGGCTGCTCTATCCTCTCCTACGACGGGGCCAACGCTTTCAAC AGCATGTACCGTCACAGAGTTCTGCCAGCGCTAGCGGAAATTATCCCTTC AGGGGTTCCCTACGCGGCAAACTTATACGCCCGAGAATCACCTAAACTGT TGTTTGCGCTAGATGGCGGAGGAGTAGAAGTGGTCGAGTCTGCGCGGGGC GTACAGCAAGGCTGCAACCTGGGCCCTCTTTGCTATAGCACAGGGCCCCT CAAGATTCTGAAGGAGATCAGGTCT
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Coding sequence (CDS) from alignment at H-elongata_contig48549:271..1245+

>mRNA_H-elongata_contig48549.12013.1 ID=mRNA_H-elongata_contig48549.12013.1|Name=mRNA_H-elongata_contig48549.12013.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1656bp|location=Sequence derived from alignment at H-elongata_contig48549:271..1245+ (Himanthalia elongata Himel1 dioecious)
AGCCGGCAGAAACCACGGGAAGACACCCCTGAAGTTCGTAGACAGCGAGC
AGGAAAGCTAGCGCATGAGCGAGGGGGCATCACGAAGGCCGCAAGCGCCC
TAATGTCTCCTCCAGCAGCACCTCAAGACAACAAGACGCTGACAATTCTA
CGCAGCAAGCATCCTGCTGAAGACCCTGCGGAAATCACCACAGGCAAAGC
CCAGGCTGAACAACGGGCAGGGACAAACGCAGTCGGTGAGCAAATGCAGC
AACAGCCGGACAGCCGGCAGAAACCACGGGAAGACACCCCTGAAGTTCGT
AGACAGCGAGCAGGAAAGCTAGCGCATGAGCGAGGGGGCATCACGAAGGC
CGCAAGCGCCCTAATGTCTCCTCCAGCAGCACCTCAAGACAACAAGACGC
TGACAATTCTACGCAGCAAGCATCCTGCTGAAGACCCTGCGGAAATCACC
ACAGGCAAAGCCCAGGCTGAACAACGGGCAGGGACAAACGCAGTCGGTGA
GCAAATGCAGCAACAGCCGGACGCCGCGCTGTGCGACGAACTAGTTGAGG
ATCTCGCCGAGTTTTCTACGCTTGTCTTCTCCAGCAGTCTTCTACCTCAA
ATATTCTCGACATTGAATACAAGCGCTAACCTGTCTGCGTTGGGCCAAAA
GGCGAGACGGGTCCCGTGTGGTGACGTCCTCCGAAGAGTTATTGGAGCCG
TTTTCTGCCGCAGATACGGCAGAAAACTTGTAGACTACTTCCAGCCTTGG
GGCCAGTATGGTGTTGCAGTGTCTGGTGGGGTAGAGATTATGACCCTAAC
ATCCATATTAGGTTTCGAAGAGGGCTGCTCTATCCTCTCCTACGACGGGG
CCAACGCTTTCAACAGCATGTACCGTCACAGAGTTCTGCCAGCGCTAGCG
GAAATTATCCCTTCAGGGGTTCCCTACGCGGCAAACTTATACGCCCGAGA
ATCACCTAAACTGTTGTTTGCGCTAGATGGCGGAGGAGTAGAAGTGGTCG
AGTCTGCGCGGGGCGTACAGCAAGGCTGCAACCTGGGCCCTCTTTGCTAT
AGCACAGGGCCCCTCAAGATTCTGAAGGAGATCAGGTCTGCCGCGCTGTG
CGACGAACTAGTTGAGGATCTCGCCGAGTTTTCTACGCTTGTCTTCTCCA
GCAGTCTTCTACCTCAAATATTCTCGACATTGAATACAAGCGCTAACCTG
TCTGCGTTGGGCCAAAAGGCGAGACGGGTCCCGTGTGGTGACGTCCTCCG
AAGAGTTATTGGAGCCGTTTTCTGCCGCAGATACGGCAGAAAACTTGTAG
ACTACTTCCAGCCTTGGGGCCAGTATGGTGTTGCAGTGTCTGGTGGGGTA
GAGATTATGACCCTAACATCCATATTAGGTTTCGAAGAGGGCTGCTCTAT
CCTCTCCTACGACGGGGCCAACGCTTTCAACAGCATGTACCGTCACAGAG
TTCTGCCAGCGCTAGCGGAAATTATCCCTTCAGGGGTTCCCTACGCGGCA
AACTTATACGCCCGAGAATCACCTAAACTGTTGTTTGCGCTAGATGGCGG
AGGAGTAGAAGTGGTCGAGTCTGCGCGGGGCGTACAGCAAGGCTGCAACC
TGGGCCCTCTTTGCTATAGCACAGGGCCCCTCAAGATTCTGAAGGAGATC
AGGTCT
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