mRNA_H-elongata_contig48388.11992.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48388.11992.1
Unique NamemRNA_H-elongata_contig48388.11992.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig48388.11992.1 vs. uniprot
Match: A0A6H5JP83_9PHAE (EAF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP83_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 6.020e-22
Identity = 84/255 (32.94%), Postives = 130/255 (50.98%), Query Frame = 1 
Query:  184 VDKMMAKSREALSRISRG---ASGERPDRASVVNGATQAARVCVSHEGALSEALDLVRRFCSVHLVGLKAVALVIDAESDKIGRREPGHY-------------------------EG-GSDGDSAVRLLRVLIAALNAFLGNAR------STGEHLEILDGTVAVIRRTIDNLTGDLGG-PTAGMAAAKLRGLTAMACFRRL------------RRSSVDQPQDARWAENLVRMGNRDVDKLLKCISR-QGKKDQ 801
            V K++ +S+ A  + +     A  E  D +++  GA QAA +CV+ E    +A+ LVR FCS H+  L  V+  ++ E+ ++ ++                              EG G+  + A RLLRVLI++ NAFL  +       ST  H+ +LD  V++ R+ I+ L+ +    P+ G AAA+LRGLTA ACF  +            +  + +Q   A  ++NL RMG +DVDKLL CIS  +GKKD+
Sbjct:   72 VKKLLVQSKAAYLQAASALAAAGEENTDVSAISQGAPQAALICVASEAVFPKAIALVRWFCSKHVASLCEVSQAMEIEAKRLEKQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGSGTRAERATRLLRVLISSFNAFLEQSSPGSGMFSTAAHVRVLDIAVSLARKAIERLSRECSADPSVGKAAARLRGLTAAACFASVSPALDGGGEADEKSQTKEQVPAAPNSDNLDRMGKKDVDKLLVCISGGEGKKDE 326
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BLAST of mRNA_H-elongata_contig48388.11992.1 vs. uniprot
Match: D7FRR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR3_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 4.380e-19
Identity = 82/269 (30.48%), Postives = 126/269 (46.84%), Query Frame = 1 
Query:  184 VDKMMAKSREALSRISRG---ASGERPDRASVVNGATQAARVCVSHEGALSEALDLVRRFCSVHLVGLKAVALVIDAESDKIGRR--------------------------EPGHYEGGSDGDSAVRLLRVLIAALNAFLGNAR------STGEHLEILDGTVAVIRRTIDNLTGDLGG-PTAGMAAAKLRGLTAMACFRRLRRSSVDQPQDARW--------------------------AENLVRMGNRDVDKLLKCISR-QGKKDQ 801
            V K++ +S+ A  + +     A GE  D A++  GA QAA +CV+ E    EA+ LVR FCS H+  L  VA  ++ E+ ++ ++                                     + A+RLLRVL+ + NAFL  +       ST  H+ +LD  V++ R+ I+ L+ +    P+ G AAA+LRGLTA ACF  +   ++D   +A                            ++NL RMG +DVDKLL C+S  + KKD+
Sbjct:   70 VKKLLVQSKAAYLQAASALAAAGGENTDVAAISQGAPQAALICVASEAVFPEAIALVRWFCSKHVASLCEVAQAMEIEAKRLEKQGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAERAIRLLRVLLGSFNAFLQQSSLGSGMFSTSAHVRVLDIAVSLARKAIERLSRECSADPSVGKAAARLRGLTAAACFAPVS-PALDGGGEADXXXXXXXXXXXXXXXXXXXXXXXXAPNSDNLDRMGKKDVDKLLMCVSGGEAKKDE 337
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48388.11992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JP83_9PHAE6.020e-2232.94EAF domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FRR3_ECTSI4.380e-1930.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48388contigH-elongata_contig48388:1198..3868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_003540.1
Hectar predicted targeting categoryother localisation
Exons5
Model size802
Cds size627
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48388.11992.1prot_H-elongata_contig48388.11992.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48388 1198..3694 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930797.1543777-CDS-H-elongata_contig48388:1197..12841622930797.1543777-CDS-H-elongata_contig48388:1197..1284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48388 1198..1284 -
1691679574.3313942-CDS-H-elongata_contig48388:1197..12841691679574.3313942-CDS-H-elongata_contig48388:1197..1284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48388 1198..1284 -
1622930797.1741652-CDS-H-elongata_contig48388:1599..17771622930797.1741652-CDS-H-elongata_contig48388:1599..1777Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48388 1600..1777 -
1691679574.3487856-CDS-H-elongata_contig48388:1599..17771691679574.3487856-CDS-H-elongata_contig48388:1599..1777Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48388 1600..1777 -
1622930797.194964-CDS-H-elongata_contig48388:1976..21651622930797.194964-CDS-H-elongata_contig48388:1976..2165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48388 1977..2165 -
1691679574.3584347-CDS-H-elongata_contig48388:1976..21651691679574.3584347-CDS-H-elongata_contig48388:1976..2165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48388 1977..2165 -
1622930797.2129574-CDS-H-elongata_contig48388:2448..26121622930797.2129574-CDS-H-elongata_contig48388:2448..2612Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48388 2449..2612 -
1691679574.3675165-CDS-H-elongata_contig48388:2448..26121691679574.3675165-CDS-H-elongata_contig48388:2448..2612Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48388 2449..2612 -
1622930797.2294188-CDS-H-elongata_contig48388:3685..36941622930797.2294188-CDS-H-elongata_contig48388:3685..3694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48388 3686..3694 -
1691679574.3805223-CDS-H-elongata_contig48388:3685..36941691679574.3805223-CDS-H-elongata_contig48388:3685..3694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48388 3686..3694 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930797.246815-UTR-H-elongata_contig48388:3694..38681622930797.246815-UTR-H-elongata_contig48388:3694..3868Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48388 3695..3868 -
1691679574.391773-UTR-H-elongata_contig48388:3694..38681691679574.391773-UTR-H-elongata_contig48388:3694..3868Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48388 3695..3868 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48388.11992.1

>prot_H-elongata_contig48388.11992.1 ID=prot_H-elongata_contig48388.11992.1|Name=mRNA_H-elongata_contig48388.11992.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=209bp
MSDVDKMMAKSREALSRISRGASGERPDRASVVNGATQAARVCVSHEGAL
SEALDLVRRFCSVHLVGLKAVALVIDAESDKIGRREPGHYEGGSDGDSAV
RLLRVLIAALNAFLGNARSTGEHLEILDGTVAVIRRTIDNLTGDLGGPTA
GMAAAKLRGLTAMACFRRLRRSSVDQPQDARWAENLVRMGNRDVDKLLKC
ISRQGKKDQ
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mRNA from alignment at H-elongata_contig48388:1198..3868-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48388.11992.1 ID=mRNA_H-elongata_contig48388.11992.1|Name=mRNA_H-elongata_contig48388.11992.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2671bp|location=Sequence derived from alignment at H-elongata_contig48388:1198..3868- (Himanthalia elongata Himel1 dioecious)
CGGCACGAGTGAGGAAAGACCCGAAGCCCCAGACGTGAAGCATACCAGGC
TTTCACAAGGAGGGGAAACCCGACATCCGGAGTGCGGAGGAAGGGTCGAC
ATCTTATATCTGGTCTAATTAAGGCGAGGATCTTGCTGCTAAGCTGGATC
ACCGTCGTATCACCGTCGTCCAGGATGAGCGACGTGAGCTTTTCTGCACT
TGGAAGGCATTATTTAGATGTGTGTGTGTGTGTGTGTGTGTGTGTTAAAT
AAACATCACATAACCGCGCAATCCGGCCTTGTCATGCTATTGTAGTCCTT
CTAGGCTACACGTGATGATCCTCCCAATGGGGGATCAATCATATTTACTA
TAAATTGTGTTGTGTTAGTGTGTGTGTGCGTGTGTGTGTGTACATAACCG
CGCAATCTATGCTAGTCCTTTTAGTCTACTCTCGCATTGATCTTCCCAAT
GGGGGGATGTGTCTGTTATATGATATATGATATATGAGTGCTATACCAAC
AAGTAGTACATTGTACAATTAATAGAAGCCACCGCAGTTCGAAAAAGATT
GAGGTGCCGTCGAGCAACCTGAGTCGAGGAGCCACTCGGAAAGGGAGGTG
GGGCGTACCAAAGTTTTTCATTCTTTATCATAGCTGTTGATCATTGATAT
ATTGACTATTTGACCACCCGTCCTCGGAAGGAAGGGGGATGTTAGATCTT
TCTTGGTGTGTGTGTGTGTGTGTCGTGATGACGTCATCCCATATTGCAGA
GTAAGGATCAGCCGGATTCGGTTGCCTCCTCCTGCTCATGGTCAGCTGAA
CAGGGAAAATTATTTTTCCCTGTCCCCGTTCGCGCCTGAGATTTGGGTCT
CGCGAGACGAGTTCGGCAGTCACGTCCCGCGTCAGCCTGCTCATTCTCTA
AACCCAGGCTGAGTCTGATGCGTACTCCCGGGAATCCTCTCGATCCTCTA
GTTTTTCGCGACGGCGTCTATCTCAACCGCGAACCGCTATCGGGTCAATC
TCGATTTCATCAGGTCACACAATTGCGTACGATGGCGTTTACGAGCGAGA
GTCTGCCGACACTTGGCCAGCAGTCCATAAGATAGATTGAGTAACAGGTG
TGTAGAGTAGTGATTCTCGAGATGAGGATCTCAGAGTCAACGCAGCATTT
GTAAATATATATATACTAGTATATATACATATATACACGCTTTACATTTC
TGCCCACGACGGGCGCACATTCGACCGCTACAGTTCCCCGTACGTTTTTT
TTTCAGGTCGACAAGATGATGGCGAAATCGAGGGAAGCCCTCTCCAGAAT
TTCACGTGGTGCATCCGGAGAGAGGCCAGACAGAGCCTCAGTCGTAAATG
GCGCGACTCAGGCGGCCAGGGTCTGCGTTTCGCACGAGGGAGCGTTATCC
GAAGCGCTGGACCTCGTCAGGTGCAGAGGTCAAGCCGTACCCTCGCTTAC
TGCGACGCTTTCCAGTATTCAGCACTGCTCGGGCGTTTTGCTACTCCCCA
TCTTACTGTTGTTTCGCCTGTGAACGCCTTACTCTCCTCCTCCCCTCTCA
TCTTGACCCGTGCTGTGCCGTATTGTGCGTATTATGTGTGTAACGACCAT
GCGTATCTGAAGACGCCAAAATCCCAACGCCGACACGGTCTTGATCATCT
CTCGTGTAGCCATTCTTGGTCTCTCAAAACGGCTCGTTGGCTTTACCGCT
CAGGAGGTTTTGCTCCGTGCATCTGGTCGGCCTGAAGGCGGTGGCACTAG
TCATTGACGCCGAATCCGACAAGATTGGACGCCGTGAGCCTGGTCACTAC
GAAGGCGGTAGCGATGGTGACAGCGCCGTCCGACTCCTCCGAGTCCTCAT
CGCCGCGCTGAACGCATTCCTCGGAAACGCGCGCAGCACCGGGTGAGTTT
TCTCTCGGATCTTTGTTCTTCAGCTCACAGCCGATCCAGGGCAAGGCTTA
CGTGTCTGGTCGTACGCGCGCGCGCTGTGTAGTGGCTCCCGTTTGCCGCC
GCTCGAGGAAAGTGTCGTGACGGGCGCTCGTAGTGCATGCGTCTCGGCGG
AGCCCTTTTTTTATCTTGCAGCCCCCCTGCTCAATGCGCAGGGAGCACTT
AGAAATTCTGGACGGGACCGTGGCGGTGATCCGGAGAACCATCGATAACC
TCACTGGGGATCTTGGCGGCCCTACGGCTGGCATGGCAGCCGCGAAGTTG
AGAGGGCTGACGGCGATGGCGTGCTTTAGGCGACTCCGCCGCTCGTCTGT
CGACCAGCCGCAGGATGCGGTGAGGGAAGAAGCGCGATTGATATTGACAC
GTCGTACGACGCAGGCCGCCGTTATGATCTCGGCAAGCTGTTGCGGAGGA
GCTAGCTCGTGCTTTTCTTTTCCATCCTTTCCGTCTTTGAGAGTCGTCGA
CCCCTTCTCCAGGCTAACGTCCGGAAACCCGGTCGCGGGCATCATTCCGC
GCCCGCCGAACCTACCGTGGCTTATTCATCGTACCTTTAGTGGTGGCGCC
TCTCGCCGATCATCGTGCTGTGGAAACAGTTCTCGTGTTCCTTTCTTTGC
CGGACGCGAACGCCTTGATCACACGCCGCAAAAGAGGTGGGCCGAAAACT
TGGTGAGGATGGGAAACCGAGACGTGGACAAGCTCCTCAAGTGCATATCC
CGACAGGGCAAGAAAGACCAG
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Coding sequence (CDS) from alignment at H-elongata_contig48388:1198..3868-

>mRNA_H-elongata_contig48388.11992.1 ID=mRNA_H-elongata_contig48388.11992.1|Name=mRNA_H-elongata_contig48388.11992.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1254bp|location=Sequence derived from alignment at H-elongata_contig48388:1198..3868- (Himanthalia elongata Himel1 dioecious)
ATGAGCGACATGAGCGACGTCGACAAGATGATGGCGAAATCGAGGGAAGC
CCTCTCCAGAATTTCACGTGGTGCATCCGGAGAGAGGCCAGACAGAGCCT
CAGTCGTAAATGGCGCGACTCAGGCGGCCAGGGTCTGCGTTTCGCACGAG
GGAGCGTTATCCGAAGCGCTGGACCTCGTCAGGTCGACAAGATGATGGCG
AAATCGAGGGAAGCCCTCTCCAGAATTTCACGTGGTGCATCCGGAGAGAG
GCCAGACAGAGCCTCAGTCGTAAATGGCGCGACTCAGGCGGCCAGGGTCT
GCGTTTCGCACGAGGGAGCGTTATCCGAAGCGCTGGACCTCGTCAGGAGG
TTTTGCTCCGTGCATCTGGTCGGCCTGAAGGCGGTGGCACTAGTCATTGA
CGCCGAATCCGACAAGATTGGACGCCGTGAGCCTGGTCACTACGAAGGCG
GTAGCGATGGTGACAGCGCCGTCCGACTCCTCCGAGTCCTCATCGCCGCG
CTGAACGCATTCCTCGGAAACGCGCGCAGCACCGGGAGGTTTTGCTCCGT
GCATCTGGTCGGCCTGAAGGCGGTGGCACTAGTCATTGACGCCGAATCCG
ACAAGATTGGACGCCGTGAGCCTGGTCACTACGAAGGCGGTAGCGATGGT
GACAGCGCCGTCCGACTCCTCCGAGTCCTCATCGCCGCGCTGAACGCATT
CCTCGGAAACGCGCGCAGCACCGGGGAGCACTTAGAAATTCTGGACGGGA
CCGTGGCGGTGATCCGGAGAACCATCGATAACCTCACTGGGGATCTTGGC
GGCCCTACGGCTGGCATGGCAGCCGCGAAGTTGAGAGGGCTGACGGCGAT
GGCGTGCTTTAGGCGACTCCGCCGCTCGTCTGTCGACCAGCCGCAGGATG
CGGGAGCACTTAGAAATTCTGGACGGGACCGTGGCGGTGATCCGGAGAAC
CATCGATAACCTCACTGGGGATCTTGGCGGCCCTACGGCTGGCATGGCAG
CCGCGAAGTTGAGAGGGCTGACGGCGATGGCGTGCTTTAGGCGACTCCGC
CGCTCGTCTGTCGACCAGCCGCAGGATGCGAGGTGGGCCGAAAACTTGGT
GAGGATGGGAAACCGAGACGTGGACAAGCTCCTCAAGTGCATATCCCGAC
AGGGCAAGAAAGACCAGAGGTGGGCCGAAAACTTGGTGAGGATGGGAAAC
CGAGACGTGGACAAGCTCCTCAAGTGCATATCCCGACAGGGCAAGAAAGA
CCAG
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