mRNA_H-elongata_contig48387.11991.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig48387.11991.1 vs. uniprot
Match: D8LQR8_ECTSI (NapH1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQR8_ECTSI) HSP 1 Score: 182 bits (461), Expect = 3.360e-56 Identity = 93/152 (61.18%), Postives = 113/152 (74.34%), Query Frame = 1
Query: 1 VITYELGDEEFETYAGVDEGVQLIKASEWEPFIRTMPHSEFPSASACICKAYAEQVAYFLGTDEIDPPLQVDD-PVTSG---PMEFDSWSKISETCSNSRVWGGMHFSDAIPAGEDLCGGGLLAESISSSIGALIEGDESAAVFKKDVGELM 444
+I + LGDE E YAG D+GVQ +KASEWEPFIRTMPHSE+PSASAC+C+ +A QV FLG D+I+P LQ P +G +EF SWS+IS+ C +SRVW GMHF+ A+PAG +LCGG +A+SI S L GDESAAVFK DVGELM
Sbjct: 1 MIRHLLGDELVEAYAGPDQGVQNVKASEWEPFIRTMPHSEYPSASACLCEGFARQVENFLGNDKIEPALQFPPGPPPAGLNASLEFASWSEISQVCGDSRVWSGMHFAGAVPAGAELCGGEDMAKSIHDSFERLKAGDESAAVFKSDVGELM 152
BLAST of mRNA_H-elongata_contig48387.11991.1 vs. uniprot
Match: A0A6H5JTZ2_9PHAE (CPO-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JTZ2_9PHAE) HSP 1 Score: 183 bits (464), Expect = 6.340e-53 Identity = 88/149 (59.06%), Postives = 112/149 (75.17%), Query Frame = 1
Query: 1 VITYELGDEEFETYAGVDEGVQLIKASEWEPFIRTMPHSEFPSASACICKAYAEQVAYFLGTDEIDPPLQVDDPVTSGP-MEFDSWSKISETCSNSRVWGGMHFSDAIPAGEDLCGGGLLAESISSSIGALIEGDESAAVFKKDVGELM 444
VI ELGDE + YAG D G+Q IKASEWEP+IRTMPHSE+PS S+CIC+ +A + + G D IDPP+ P GP +EF SW++IS+ C +SRVW G+HF +A+PAG +LCGG +A SI++SI AL GDESAAVFK+DVGEL+
Sbjct: 332 VIRNELGDELVDAYAGPDIGIQTIKASEWEPYIRTMPHSEYPSGSSCICEGFASALRLWAGNDIIDPPIGFPPPEFGGPILEFSSWTEISQMCGDSRVWAGLHFEEAVPAGAELCGGDEIAVSIAASIDALTAGDESAAVFKRDVGELV 480
BLAST of mRNA_H-elongata_contig48387.11991.1 vs. uniprot
Match: D8LSP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSP1_ECTSI) HSP 1 Score: 178 bits (451), Expect = 9.280e-52 Identity = 90/152 (59.21%), Postives = 113/152 (74.34%), Query Frame = 1
Query: 1 VITYELGDEEFETYAGVDEGVQLIKASEWEPFIRTMPHSEFPSASACICKAYAEQVAYFLGTDEIDPPLQVDD-PVTSG---PMEFDSWSKISETCSNSRVWGGMHFSDAIPAGEDLCGGGLLAESISSSIGALIEGDESAAVFKKDVGELM 444
+I + LGDE E YAG D+GVQ +KASEWEPFIRTMPHSE+PSASAC+C+ +A QV FLG D+I+P L+ P +G +EF SWS+IS+ C +SR+WGGMHF+ A+ AG +LCGG +A+SI S L GDESAA+FK DVGELM
Sbjct: 247 MIRHLLGDELVEAYAGPDQGVQTMKASEWEPFIRTMPHSEYPSASACLCEGFARQVENFLGDDKIEPALEFPPGPPPAGLNASLEFASWSEISQVCGDSRIWGGMHFAGAVLAGAELCGGEDMAKSIHDSFERLKAGDESAAIFKSDVGELM 398
BLAST of mRNA_H-elongata_contig48387.11991.1 vs. uniprot
Match: A0A6H5K7C3_9PHAE (CPO-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7C3_9PHAE) HSP 1 Score: 174 bits (441), Expect = 4.650e-50 Identity = 86/153 (56.21%), Postives = 111/153 (72.55%), Query Frame = 1
Query: 1 VITYELGDEEFETYAGVDEGVQLIKASEWEPFIRTMPHSEFPSASACICKAYAEQVAYFLGTDEIDPPLQVDD-PVTSG----PMEFDSWSKISETCSNSRVWGGMHFSDAIPAGEDLCGGGLLAESISSSIGALIEGDESAAVFKKDVGELM 444
++ ++LGD E YAG +GVQ IKASEWEPFIRTMPHSE+PS S+C+C+A+A+Q+ FLG D I+P LQ P G P+EF SWS+IS+ C +SR WGGMHF+ A+PAG +LCG +A+SI S+ L GDESAA+F D+GELM
Sbjct: 268 MVKHKLGDALVEAYAGPGQGVQTIKASEWEPFIRTMPHSEYPSGSSCLCEAFAKQIENFLGDDTIEPALQFPPGPPPPGFDAPPLEFASWSEISQVCGDSRAWGGMHFAGAVPAGAELCGSTDMAKSIHDSLERLKVGDESAAIFTTDIGELM 420
BLAST of mRNA_H-elongata_contig48387.11991.1 vs. uniprot
Match: A0A6H5L4I1_9PHAE (CPO-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4I1_9PHAE) HSP 1 Score: 122 bits (306), Expect = 8.890e-30 Identity = 72/154 (46.75%), Postives = 99/154 (64.29%), Query Frame = 1
Query: 1 VITYELGDEEFETYAGVDEGVQLIKASEW-EPFIRTMP--HSEFPSASACICKAYAEQVA-YFLGTDEIDPPLQV--DDPVTSGPMEFDSWSKISETCSNSRVWGGMHFSDAIPAGEDLCGGGLLAESISSSIGALIEGDESAAVFKKDVGELM 444
V+ E+GDE E YAG D GVQ + ASEW + +R +E + + Y ++ + GTD I+PPL+ +DP+ S F SWS+ISE C +SRVWGG+HF +++PAG +LCGG +A SI++SI L GDES AVFK+D+GELM
Sbjct: 381 VVRNEIGDEIVEAYAGPDSGVQNMTASEWVDRSVRIFQGTDTERKQERFHMQQEYHKKTGRVWAGTDTINPPLEQPEEDPLVS----FASWSEISEMCGDSRVWGGLHFEESVPAGVELCGGDEMAISIAASIDGLTAGDESVAVFKRDIGELM 530
BLAST of mRNA_H-elongata_contig48387.11991.1 vs. uniprot
Match: A0A0G4IDW2_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4IDW2_9ALVE) HSP 1 Score: 103 bits (257), Expect = 6.790e-23 Identity = 56/124 (45.16%), Postives = 71/124 (57.26%), Query Frame = 1
Query: 19 GDEEFETYAGVDE-GVQLIKASEWEPFIRTMPHSEFPSASACICKAYAEQVAYFLGTDEIDPPLQVDD---------------PVTSGPMEFDSWSKISETCSNSRVWGGMHFSDAIPAGEDLC 342
G E T+AG D G + IK EWEP IRTMPH+E+PS SAC+CKA+AE + F G+DE++ P D P + F WS+I+ETCS SR GGMHFS A+ D+C
Sbjct: 493 GTERKSTWAGGDVLGEREIKVVEWEPVIRTMPHAEYPSGSACMCKAWAEALTAFSGSDEVNKPSPALDIVVKKGQSKIAPHVRPTEDVRLTFSRWSQIAETCSVSRTAGGMHFSKALDVSADMC 616
BLAST of mRNA_H-elongata_contig48387.11991.1 vs. uniprot
Match: A0A7S3Z7G8_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z7G8_9EUKA) HSP 1 Score: 100 bits (249), Expect = 7.370e-22 Identity = 48/108 (44.44%), Postives = 71/108 (65.74%), Query Frame = 1
Query: 55 EGVQLIKASEWEPFIRTMPHSEFPSASACICKAYAEQVAYFLGTDEIDPPLQVD------------DPVTSGPMEFDSWSKISETCSNSRVWGGMHFSDAIPAGEDLC 342
+G ++IK +E+EP IRTMPHSE+PSASAC+C+A+ + +A LG+D I PP + PV + F+ WS+++ C SR++GGMHF+ A+PAG +LC
Sbjct: 385 DGPEVIKQTEFEPVIRTMPHSEYPSASACVCQAFFDALADKLGSDSITPPATLGIQAGGTRNSPGLRPVEDVNLIFNLWSEMNTLCGQSRLFGGMHFTKAVPAGANLC 492
BLAST of mRNA_H-elongata_contig48387.11991.1 vs. uniprot
Match: R7QSC8_CHOCR (PAP2/haloperoxidase-like protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSC8_CHOCR) HSP 1 Score: 99.8 bits (247), Expect = 1.280e-21 Identity = 48/126 (38.10%), Postives = 73/126 (57.94%), Query Frame = 1
Query: 13 ELGDEEFETYAGVDEGVQLIKASEWEPFIRTMPHSEFPSASACICKAYAEQVAYFLGTDEI---DPPLQVDDPVTSGP-------------MEFDSWSKISETCSNSRVWGGMHFSDAIPAGEDLC 342
+L ++ YAG ++G + ++A +WEP+IRTMPHSE+PS SAC C +AE + F G+D P + V +G + ++SWS ++E C SR+ GGMHF+ ++PAG LC
Sbjct: 362 DLAGQKIFAYAGANQGKKQMRAEDWEPYIRTMPHSEYPSGSACFCAVFAESMKLFFGSDNFLANGKPSPLSLKVAAGQSLVEPGRPSADVTLVYNSWSAVAEDCGKSRLTGGMHFTASVPAGAALC 487
BLAST of mRNA_H-elongata_contig48387.11991.1 vs. uniprot
Match: A0A0G4IG90_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4IG90_9ALVE) HSP 1 Score: 95.1 bits (235), Expect = 6.580e-20 Identity = 57/147 (38.78%), Postives = 80/147 (54.42%), Query Frame = 1
Query: 37 TYAGVDE-GVQLIKASEWEPFIRTMPHSEFPSASACICKAYAEQV-AYFLGTDEIDPPLQVDDPVTSGP--------------MEFDSWSKISETCSNSRVWGGMHFSDAIPAGEDLCGGGLLAESISSSIGALIEGDESAAVFKKD 429
TYAG G + I S+W+P IRTMPH+E PS SAC+C+ + E + A+ D +DPP VD + G ++ +S+++E C SRV GGMHF ++ AGEDLC G L I+ + L EGD A + +D
Sbjct: 406 TYAGPFVLGSREISVSDWKPVIRTMPHAEHPSGSACLCRVFEEVMQAFNKKGDVVDPPGAVDLQIQKGGSRVSPRLRPEKELLFQYKKFSEVTEECKISRVIGGMHFPQSLDAGEDLCAG--LGTEIAEKVKRLEEGDPDARIEARD 550
BLAST of mRNA_H-elongata_contig48387.11991.1 vs. uniprot
Match: D8LLS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLS4_ECTSI) HSP 1 Score: 92.0 bits (227), Expect = 6.240e-19 Identity = 59/148 (39.86%), Postives = 72/148 (48.65%), Query Frame = 1
Query: 1 VITYELGDEEFETYAGVDEGVQLIKASEWEPFIRTMPHSEFPSASACICKAYAEQVAYFLGTDEIDPPLQVDDPVTSGPMEFDSWSKISETCSNSRVWGGMHFSDAIPAGEDLCGGGLLAESISSSIGALIEGDESAAVFKKDVGELM 444
+I ++LGDE E YAG EGVQ +KASEWE F+RT P SE+PSASAC+C+ A+PAG +LCGG +A SI S+ L GDESAA+FK DVGELM
Sbjct: 391 MIKHKLGDELVEAYAGPGEGVQTMKASEWESFMRTNPTSEYPSASACLCEG------------------------------------------------------AVPAGAELCGGMDMAMSIHDSLERLKAGDESAAIFKTDVGELM 484 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48387.11991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig48387.11991.1 >prot_H-elongata_contig48387.11991.1 ID=prot_H-elongata_contig48387.11991.1|Name=mRNA_H-elongata_contig48387.11991.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp VITYELGDEEFETYAGVDEGVQLIKASEWEPFIRTMPHSEFPSASACICKback to top mRNA from alignment at H-elongata_contig48387:43..2357+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig48387.11991.1 ID=mRNA_H-elongata_contig48387.11991.1|Name=mRNA_H-elongata_contig48387.11991.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2315bp|location=Sequence derived from alignment at H-elongata_contig48387:43..2357+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig48387:43..2357+ >mRNA_H-elongata_contig48387.11991.1 ID=mRNA_H-elongata_contig48387.11991.1|Name=mRNA_H-elongata_contig48387.11991.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig48387:43..2357+ (Himanthalia elongata Himel1 dioecious)back to top |