mRNA_H-elongata_contig48381.11990.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48381.11990.1
Unique NamemRNA_H-elongata_contig48381.11990.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig48381.11990.1 vs. uniprot
Match: D8LES6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LES6_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 6.120e-16
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 VLAVCASCDSAYHLGCVEPALPRVPFHDWFCGDCA 105
            VL VC +CDSAYHLGCVEPALPR+PFHDWFCGDCA
Sbjct:  360 VLVVCVACDSAYHLGCVEPALPRMPFHDWFCGDCA 394
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BLAST of mRNA_H-elongata_contig48381.11990.1 vs. uniprot
Match: UPI00188585F9 (PHD and RING finger domain-containing protein 1-like n=2 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI00188585F9)

HSP 1 Score: 53.1 bits (126), Expect = 5.570e-7
Identity = 20/38 (52.63%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:    4 LAVCASCDSAYHLGCVEPALPRVPFHDWFCGDCAKVRA 117
            L +C  CD+ YHL C+EP L  VP  +WFC +CA +RA
Sbjct:  163 LLLCDGCDAGYHLDCLEPPLDAVPVDEWFCPECAPLRA 200
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BLAST of mRNA_H-elongata_contig48381.11990.1 vs. uniprot
Match: UPI001C900EE3 (PHD and RING finger domain-containing protein 1-like n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C900EE3)

HSP 1 Score: 52.8 bits (125), Expect = 7.580e-7
Identity = 20/38 (52.63%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:    4 LAVCASCDSAYHLGCVEPALPRVPFHDWFCGDCAKVRA 117
            L +C  CD+ YHL C+EP L  VP  +WFC +CA +RA
Sbjct:  174 LLLCDGCDAGYHLDCLEPPLHEVPTDEWFCPECAPLRA 211
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BLAST of mRNA_H-elongata_contig48381.11990.1 vs. uniprot
Match: A0A7E6E393_9CHIR (PHD and RING finger domain-containing protein 1 isoform X1 n=9 Tax=Phyllostomus TaxID=9422 RepID=A0A7E6E393_9CHIR)

HSP 1 Score: 51.2 bits (121), Expect = 2.650e-6
Identity = 20/39 (51.28%), Postives = 26/39 (66.67%), Query Frame = 1 
Query:    4 LAVCASCDSAYHLGCVEPALPRVPFHDWFCGDCAKVRAA 120
            L +C SCDS YH+ C++P L  VP  +WFC +CA   AA
Sbjct:  194 LLLCDSCDSGYHMECLDPPLQEVPVDEWFCPECAVPGAA 232
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BLAST of mRNA_H-elongata_contig48381.11990.1 vs. uniprot
Match: A0A8B7P023_HYAAZ (uncharacterized protein LOC108674966 isoform X1 n=2 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7P023_HYAAZ)

HSP 1 Score: 51.2 bits (121), Expect = 2.660e-6
Identity = 18/34 (52.94%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:   10 VCASCDSAYHLGCVEPALPRVPFHDWFCGDCAKV 111
            +C SCDS YH+ C+EPAL  VP  +WFC  C+ +
Sbjct:  178 LCDSCDSGYHMDCLEPALEVVPIEEWFCPSCSLI 211
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BLAST of mRNA_H-elongata_contig48381.11990.1 vs. uniprot
Match: A0A232EV31_9HYME (RING-type E3 ubiquitin transferase n=3 Tax=Pteromalinae TaxID=272242 RepID=A0A232EV31_9HYME)

HSP 1 Score: 48.9 bits (115), Expect = 1.740e-5
Identity = 16/31 (51.61%), Postives = 22/31 (70.97%), Query Frame = 1 
Query:   10 VCASCDSAYHLGCVEPALPRVPFHDWFCGDC 102
            +C  C+  YH+GC+ PALP+VP  DW+C  C
Sbjct:  304 LCDECEDEYHIGCLTPALPKVPEEDWYCPRC 334
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BLAST of mRNA_H-elongata_contig48381.11990.1 vs. uniprot
Match: A0A068U991_COFCA (Uncharacterized protein n=7 Tax=Coffea TaxID=13442 RepID=A0A068U991_COFCA)

HSP 1 Score: 48.5 bits (114), Expect = 2.390e-5
Identity = 16/32 (50.00%), Postives = 21/32 (65.62%), Query Frame = 1 
Query:   10 VCASCDSAYHLGCVEPALPRVPFHDWFCGDCA 105
            +C  CD  YHL C+ P +PRVPF  W+C  C+
Sbjct:   97 LCDKCDKGYHLDCLRPIVPRVPFGHWYCPSCS 128
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BLAST of mRNA_H-elongata_contig48381.11990.1 vs. uniprot
Match: A0A2D4C314_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C314_PYTIN)

HSP 1 Score: 47.8 bits (112), Expect = 4.470e-5
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 1 
Query:   10 VCASCDSAYHLGCVEPALPRVPFHDWFCGDCAKVRAA 120
            +C SCD+AYHL C+EPAL  +P  +W+C  C   R +
Sbjct:  978 LCDSCDAAYHLFCLEPALDEIPSGNWYCPRCPIQRVS 1014
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48381.11990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LES6_ECTSI6.120e-1688.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI00188585F95.570e-752.63PHD and RING finger domain-containing protein 1-li... [more]
UPI001C900EE37.580e-752.63PHD and RING finger domain-containing protein 1-li... [more]
A0A7E6E393_9CHIR2.650e-651.28PHD and RING finger domain-containing protein 1 is... [more]
A0A8B7P023_HYAAZ2.660e-652.94uncharacterized protein LOC108674966 isoform X1 n=... [more]
A0A232EV31_9HYME1.740e-551.61RING-type E3 ubiquitin transferase n=3 Tax=Pteroma... [more]
A0A068U991_COFCA2.390e-550.00Uncharacterized protein n=7 Tax=Coffea TaxID=13442... [more]
A0A2D4C314_PYTIN4.470e-548.65Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48381contigH-elongata_contig48381:3506..3628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue4.5e-13
Seed eggNOG ortholog2880.D8LES6
EggNOG free text desc.histone lysine demethylation
EggNOG OGsCOG0055@1,KOG1246@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930796.996705-CDS-H-elongata_contig48381:3505..36281622930796.996705-CDS-H-elongata_contig48381:3505..3628Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48381 3506..3628 +
1691679574.285523-CDS-H-elongata_contig48381:3505..36281691679574.285523-CDS-H-elongata_contig48381:3505..3628Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48381 3506..3628 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48381.11990.1prot_H-elongata_contig48381.11990.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48381 3506..3628 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48381.11990.1

>prot_H-elongata_contig48381.11990.1 ID=prot_H-elongata_contig48381.11990.1|Name=mRNA_H-elongata_contig48381.11990.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
VLAVCASCDSAYHLGCVEPALPRVPFHDWFCGDCAKVRAAS
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mRNA from alignment at H-elongata_contig48381:3506..3628+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48381.11990.1 ID=mRNA_H-elongata_contig48381.11990.1|Name=mRNA_H-elongata_contig48381.11990.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=123bp|location=Sequence derived from alignment at H-elongata_contig48381:3506..3628+ (Himanthalia elongata Himel1 dioecious)
GTCTTGGCCGTGTGCGCCTCGTGCGACAGCGCGTACCACCTGGGATGCGT
AGAGCCCGCCCTGCCAAGGGTGCCCTTCCACGATTGGTTCTGTGGAGACT
GCGCGAAGGTGAGAGCCGCCTCG
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Coding sequence (CDS) from alignment at H-elongata_contig48381:3506..3628+

>mRNA_H-elongata_contig48381.11990.1 ID=mRNA_H-elongata_contig48381.11990.1|Name=mRNA_H-elongata_contig48381.11990.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig48381:3506..3628+ (Himanthalia elongata Himel1 dioecious)
GTCTTGGCCGTGTGCGCCTCGTGCGACAGCGCGTACCACCTGGGATGCGT
AGAGCCCGCCCTGCCAAGGGTGCCCTTCCACGATTGGTTCTGTGGAGACT
GCGCGAAGGTGAGAGCCGCCTCGGTCTTGGCCGTGTGCGCCTCGTGCGAC
AGCGCGTACCACCTGGGATGCGTAGAGCCCGCCCTGCCAAGGGTGCCCTT
CCACGATTGGTTCTGTGGAGACTGCGCGAAGGTGAGAGCCGCCTCG
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