mRNA_H-elongata_contig48372.11988.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48372.11988.1
Unique NamemRNA_H-elongata_contig48372.11988.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig48372.11988.1 vs. uniprot
Match: D8LEW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW3_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 1.310e-40
Identity = 75/100 (75.00%), Postives = 84/100 (84.00%), Query Frame = 1 
Query:    1 NLMGFFEQIGNTFASIQPWREFPPGHPRHGEPPPTLEEERRRLSRLRVLRFALTIVMAYAAFRLSRALHRLVAGRPGGSRAALTHASLENIYRQQRVRGG 300
            NLMGF E IGN+  SIQPWREFPPGHPRHGEPPPT EEERRRLSRLRVLRFALT+V+AYA FR+SRALHRL++GR    R A+  ASLE+IY  Q+ RGG
Sbjct:   14 NLMGFLEHIGNSLTSIQPWREFPPGHPRHGEPPPTPEEERRRLSRLRVLRFALTLVVAYAGFRVSRALHRLISGRHR-PRPAIAQASLEDIYSLQQ-RGG 111
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BLAST of mRNA_H-elongata_contig48372.11988.1 vs. uniprot
Match: A0A6H5KL98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL98_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 5.120e-38
Identity = 79/114 (69.30%), Postives = 89/114 (78.07%), Query Frame = 1 
Query:    1 NLMGFFEQIGNTFASIQPWREFPPGHPRHGEPPPTLEEERRRLSRLRVLRFALTIVMAYAAFRLSRALHRLVAGRPGGSRAALTHASLENIYR-QQRVRGGTLKGKHQSAEALA 339
            NLMGF E IGN+  SIQPWREFPPGHPRHGEPPPT EEERRRLSRLRVLRFALT+V+AYA FR SRALHRL++GR    R A+  ASLE+IY  QQR R G   G+ ++A   A
Sbjct:  306 NLMGFLEHIGNSLTSIQPWREFPPGHPRHGEPPPTPEEERRRLSRLRVLRFALTLVVAYAGFRASRALHRLISGRHR-PRPAIAQASLEDIYSLQQRGRVGGGNGQARTAVGAA 418
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BLAST of mRNA_H-elongata_contig48372.11988.1 vs. uniprot
Match: A0A836CLC2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLC2_9STRA)

HSP 1 Score: 102 bits (255), Expect = 2.800e-24
Identity = 53/96 (55.21%), Postives = 66/96 (68.75%), Query Frame = 1 
Query:    1 NLMGFFEQIGNTFASIQPWREFPPGHPRHGEPPPTLEEERRRLSRLRVLRFALTIVMAYAAFRLSRALHRLVAGRPGGSRAA----LTHASLENIY 276
            NLM F E  G   AS+QPWREFPPGHPRHGEPPPT EEERRR++R+RVLR+  ++++AYA F+L R L      R    RAA    L   ++ENI+
Sbjct:   98 NLMSFIENAGLALASLQPWREFPPGHPRHGEPPPTAEEERRRVTRVRVLRWVASLLIAYAGFKLLRLLRGAPQRRALTHRAAPTRMLAETAMENIF 193
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BLAST of mRNA_H-elongata_contig48372.11988.1 vs. uniprot
Match: A0A7S2UWF4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWF4_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 6.020e-13
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    7 MGFFEQIGNTFASIQPWR-EFPPGHPRHGEPPPTLEEERRRLSRLRVLRFALTIVMAYAAFR 189
            +G  E + +  + +QPW+ +FPPGHPRHGEP PT EEERRR+ RLRVLRF      AY A++
Sbjct:   37 LGILEAVSSFISHLQPWQPDFPPGHPRHGEPQPTPEEERRRIHRLRVLRFFTACFAAYLAYK 98
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BLAST of mRNA_H-elongata_contig48372.11988.1 vs. uniprot
Match: A0A6G0W6V5_9STRA (Peroxin-13 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W6V5_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.690e-7
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:   31 NTFASIQPWREFPPGHPRHGEPPPTLEEERRRLSRLRVLRFALTIVMAYAAFRLSRALHRL 213
            N  A + P  +FPPGHPR+GEPP T EE + RL R+RV++F + ++  YAA R+ + +  L
Sbjct:  176 NAVAMLSPKPDFPPGHPRYGEPPETEEEIKSRLRRVRVVKFLVGLLALYAASRIVQRIRNL 236
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BLAST of mRNA_H-elongata_contig48372.11988.1 vs. uniprot
Match: A0A833WCQ5_PHYIN (Peroxin-13 n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WCQ5_PHYIN)

HSP 1 Score: 56.2 bits (134), Expect = 2.080e-6
Identity = 43/104 (41.35%), Postives = 55/104 (52.88%), Query Frame = 1 
Query:   13 FFEQIGNTFASIQ----PWREFPPGHPRHGEPPPTLEEERRRLSRLRVLRF-----ALTIVMAYAAFRL-----SRALHRLVAGRPGGSRAALTHASLENIYRQ 282
            F E+IG   A I     P   FPPGHPRHGEPP T EEE+ RL R+R+++F     ALT+V  Y   R      SRA  +L+   P           LENI+++
Sbjct:  207 FLERIGAVCAGIAAMLAPRPTFPPGHPRHGEPPVTEEEEKSRLRRVRIVQFMVSMAALTVV--YKGLRWIMRLRSRATQKLLVAPPTTGMGR----DLENIFQR 304
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BLAST of mRNA_H-elongata_contig48372.11988.1 vs. uniprot
Match: A0A6A3UN19_9STRA (Peroxin-13 n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UN19_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.130e-6
Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:   13 FFEQIGNTFASIQ----PWREFPPGHPRHGEPPPTLEEERRRLSRLRVLRFALTIVMAYAAFRLSRALHRLVAGRP 228
            F E+IG   A I     P   FPPGHPRHGEPP T EEE+ R+ R+R+ +F +++     A++  R L RL +  P
Sbjct:  216 FLERIGAMCAGIAAMLAPRPVFPPGHPRHGEPPATEEEEKSRVRRVRIFQFMVSMAALACAYKGLRWLTRLRSKTP 291
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BLAST of mRNA_H-elongata_contig48372.11988.1 vs. uniprot
Match: A0A3R7JXX5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JXX5_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.950e-6
Identity = 37/101 (36.63%), Postives = 51/101 (50.50%), Query Frame = 1 
Query:   13 FFEQIGNTFASIQ----PWREFPPGHPRHGEPPPTLEEERRRLSRLRVLRFALTIVMAYAAF-------RLSRALHRLVAGRPGGSRAALTHASLENIYRQ 282
            F E+IG   A I     P   FPPGHPRHGEPP T EEER RL R+R+ +F +++      +       RL +   +L+   P           LENI+++
Sbjct:   78 FLERIGAMCAGIASMLAPRPVFPPGHPRHGEPPVTEEEERSRLRRVRIFQFMVSMAGLTCLYKGLQWLARLRKPASKLLVAPPSNGMGR----DLENIFQR 174
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BLAST of mRNA_H-elongata_contig48372.11988.1 vs. uniprot
Match: M4BRU7_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BRU7_HYAAE)

HSP 1 Score: 52.4 bits (124), Expect = 4.480e-6
Identity = 34/87 (39.08%), Postives = 47/87 (54.02%), Query Frame = 1 
Query:   40 ASIQPWREFPPGHPRHGEPPPTLEEERRRLSRLRVLRFALT---IVMAYAAFRLSRA---LHRLVAGRPGGSRAALTHASLENIYRQ 282
            A + P   FPPGHPRHGEPP T EEER R  R+R+ +F L+   + + Y   R  R    L +L+   P  S     +  LE I+++
Sbjct:    7 AMLAPRPVFPPGHPRHGEPPVTEEEERSRRRRVRIFQFILSMAILALVYKGLRWLRGRTLLKKLLVASPSRS----VNRDLEQIFQR 89
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BLAST of mRNA_H-elongata_contig48372.11988.1 vs. uniprot
Match: G5A3S2_PHYSP (Peroxin-13 n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A3S2_PHYSP)

HSP 1 Score: 54.7 bits (130), Expect = 7.370e-6
Identity = 32/71 (45.07%), Postives = 42/71 (59.15%), Query Frame = 1 
Query:   13 FFEQIGNTFASIQ----PWREFPPGHPRHGEPPPTLEEERRRLSRLRVLRFALTIVMAYAAFRLSRALHRL 213
            F E+IG   A I     P   FPPGHPRHGEPP T EEE+ RL R+R+ +F +++      ++  R L RL
Sbjct:  215 FLERIGAMCAGIAAMLAPRPVFPPGHPRHGEPPVTEEEEKSRLRRVRIFQFMVSMAALGCVYKGLRWLARL 285
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48372.11988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LEW3_ECTSI1.310e-4075.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KL98_9PHAE5.120e-3869.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CLC2_9STRA2.800e-2455.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UWF4_9STRA6.020e-1354.84Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6G0W6V5_9STRA4.690e-745.90Peroxin-13 n=1 Tax=Aphanomyces euteiches TaxID=100... [more]
A0A833WCQ5_PHYIN2.080e-641.35Peroxin-13 n=2 Tax=Phytophthora infestans TaxID=47... [more]
A0A6A3UN19_9STRA2.130e-643.42Peroxin-13 n=6 Tax=Phytophthora TaxID=4783 RepID=A... [more]
A0A3R7JXX5_9STRA3.950e-636.63Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
M4BRU7_HYAAE4.480e-639.08Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
G5A3S2_PHYSP7.370e-645.07Peroxin-13 n=1 Tax=Phytophthora sojae (strain P649... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48372contigH-elongata_contig48372:2616..3858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size462
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48372.11988.1prot_H-elongata_contig48372.11988.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48372 2616..3852 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930796.8142152-CDS-H-elongata_contig48372:2615..28971622930796.8142152-CDS-H-elongata_contig48372:2615..2897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48372 2616..2897 -
1691679574.1959155-CDS-H-elongata_contig48372:2615..28971691679574.1959155-CDS-H-elongata_contig48372:2615..2897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48372 2616..2897 -
1622930796.831933-CDS-H-elongata_contig48372:3518..36101622930796.831933-CDS-H-elongata_contig48372:3518..3610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48372 3519..3610 -
1691679574.2062976-CDS-H-elongata_contig48372:3518..36101691679574.2062976-CDS-H-elongata_contig48372:3518..3610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48372 3519..3610 -
1622930796.8438125-CDS-H-elongata_contig48372:3770..38521622930796.8438125-CDS-H-elongata_contig48372:3770..3852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48372 3771..3852 -
1691679574.2193804-CDS-H-elongata_contig48372:3770..38521691679574.2193804-CDS-H-elongata_contig48372:3770..3852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48372 3771..3852 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930796.8582697-UTR-H-elongata_contig48372:3852..38581622930796.8582697-UTR-H-elongata_contig48372:3852..3858Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48372 3853..3858 -
1691679574.229326-UTR-H-elongata_contig48372:3852..38581691679574.229326-UTR-H-elongata_contig48372:3852..3858Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48372 3853..3858 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48372.11988.1

>prot_H-elongata_contig48372.11988.1 ID=prot_H-elongata_contig48372.11988.1|Name=mRNA_H-elongata_contig48372.11988.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp
MGFFEQIGNTFASIQPWREFPPGHPRHGEPPPTLEEERRRLSRLRVLRFA
LTIVMAYAAFRLSRALHRLVAGRPGGSRAALTHASLENIYRQQRVRGGTL
KGKHQSAEALAWDGSGSSVSSQSSRVAGGARAGRGGSVGGAFDDADPWNN
L*
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mRNA from alignment at H-elongata_contig48372:2616..3858-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48372.11988.1 ID=mRNA_H-elongata_contig48372.11988.1|Name=mRNA_H-elongata_contig48372.11988.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1243bp|location=Sequence derived from alignment at H-elongata_contig48372:2616..3858- (Himanthalia elongata Himel1 dioecious)
AACCTCATGGGTTTTTTTGAGCAAATCGGCAACACCTTCGCATCCATACA
GCCGTGGCGAGAGTTCCCTCCCGGACACCCGCGACACGGTGAGGCTCTGG
GAACGGCCCACGCACCGTTTTCAGTTAAGCCGCTCTCCTTCAACGGTTTC
CATCTGACCTCTGACGTGTGAGATTATACGCGGGAGTGCTTTAGGTCATC
GCTGACTTTACCGTGTTGTCCTCCTTGCTCCAAATGCCAAAATGTCAGGC
GAACCGCCGCCCACGCTGGAGGAAGAGCGAAGACGCTTAAGCCGATTGCG
GGTGCTCCGGTTTGCGCTTACGATCGTCATGGCTTACGCGGTGAGAAACG
GCGCGCTTTGACGAAGACACCGACGCTTGAGATTGAAAAGTTTTTTTTTA
TAAAAATAACGGCACCCAAGGGACGGACGGGCGCACGGCGTGGACTCGCC
CTCCCCACAAATATCTACGACGCGAACTCACCGTTAGTATCAGGAAGCGC
AAACGTTGCATGAAAAAACATTCGCCTAGAACACTAAAAAAAAAAAATCC
TGCGCCAGTACCCCCGAGAGGAAGCGAGACGGGAGAGGTGGCGGATGGGG
GGGGCACTCTCCGAACTGACGATAGACGGGTTAACCGAGCTTTCCTTATC
CGGATTGAGTTGGCTTGTCTTCCTCTAGTTGCCAACGATTCTTTCCCCCC
CCACCTCCCCTCTCCAAACATTTGTTTTTCACCTTAAAACGACTCGCCTT
CTTGGCAGTAATATTTCATATCTACTCTCTCTCGATAATATCTCTCGAGG
CGAAAGACTGCCGCACTTGAACGGCCACCTTGGAGACAGTGGTTGGAAAA
TAACAGGCGCCGTGGACAGACGTAATTGTCACACACCTTACATGACACCC
CGATGGGCACACACACGCGCTCACAACCTCTATGTGCACGTTCTTCCTCA
AAATTTTGCAGGCGTTCCGATTATCTCGAGCGTTACACCGGCTCGTCGCT
GGTCGTCCAGGAGGATCAAGAGCTGCTCTCACCCACGCGTCCCTCGAGAA
CATATATCGGCAGCAGCGAGTTCGAGGAGGCACGCTGAAAGGTAAACACC
AAAGCGCCGAGGCTTTGGCGTGGGATGGATCGGGGTCTAGCGTCTCCAGT
CAATCTTCTCGCGTCGCGGGTGGAGCGAGGGCTGGCCGCGGCGGGTCCGT
AGGCGGAGCGTTTGATGACGCCGATCCGTGGAATAATCTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig48372:2616..3858-

>mRNA_H-elongata_contig48372.11988.1 ID=mRNA_H-elongata_contig48372.11988.1|Name=mRNA_H-elongata_contig48372.11988.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at H-elongata_contig48372:2616..3858- (Himanthalia elongata Himel1 dioecious)
ATGGGTTTTTTTGAGCAAATCGGCAACACCTTCGCATCCATACAGCCGTG
GCGAGAGTTCCCTCCCGGACACCCGCGACACGATGGGTTTTTTTGAGCAA
ATCGGCAACACCTTCGCATCCATACAGCCGTGGCGAGAGTTCCCTCCCGG
ACACCCGCGACACGGCGAACCGCCGCCCACGCTGGAGGAAGAGCGAAGAC
GCTTAAGCCGATTGCGGGTGCTCCGGTTTGCGCTTACGATCGTCATGGCT
TACGCGGCGAACCGCCGCCCACGCTGGAGGAAGAGCGAAGACGCTTAAGC
CGATTGCGGGTGCTCCGGTTTGCGCTTACGATCGTCATGGCTTACGCGGC
GTTCCGATTATCTCGAGCGTTACACCGGCTCGTCGCTGGTCGTCCAGGAG
GATCAAGAGCTGCTCTCACCCACGCGTCCCTCGAGAACATATATCGGCAG
CAGCGAGTTCGAGGAGGCACGCTGAAAGGTAAACACCAAAGCGCCGAGGC
TTTGGCGTGGGATGGATCGGGGTCTAGCGTCTCCAGTCAATCTTCTCGCG
TCGCGGGTGGAGCGAGGGCTGGCCGCGGCGGGTCCGTAGGCGGAGCGTTT
GATGACGCCGATCCGTGGAATAATCTTTGAGCGTTCCGATTATCTCGAGC
GTTACACCGGCTCGTCGCTGGTCGTCCAGGAGGATCAAGAGCTGCTCTCA
CCCACGCGTCCCTCGAGAACATATATCGGCAGCAGCGAGTTCGAGGAGGC
ACGCTGAAAGGTAAACACCAAAGCGCCGAGGCTTTGGCGTGGGATGGATC
GGGGTCTAGCGTCTCCAGTCAATCTTCTCGCGTCGCGGGTGGAGCGAGGG
CTGGCCGCGGCGGGTCCGTAGGCGGAGCGTTTGATGACGCCGATCCGTGG
AATAATCTTTGA
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