mRNA_H-elongata_contig48370.11987.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48370.11987.1
Unique NamemRNA_H-elongata_contig48370.11987.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig48370.11987.1 vs. uniprot
Match: D7FJK2_ECTSI (Similar to ribosomal protein S29 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJK2_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.380e-30
Identity = 49/54 (90.74%), Postives = 50/54 (92.59%), Query Frame = 1 
Query:    1 MGSKALVNSHPKKFGKGGRFCRVCSNQHGLIRKYGLNMCRQCFRVYAKDIGFTK 162
            MGSKALVNSHPK FGKGGR CRVCSNQHGLIRKYGL MCRQCFRVYA +IGFTK
Sbjct:   43 MGSKALVNSHPKSFGKGGRHCRVCSNQHGLIRKYGLYMCRQCFRVYATEIGFTK 96
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BLAST of mRNA_H-elongata_contig48370.11987.1 vs. uniprot
Match: A0A3P9IV47_ORYLA (40S ribosomal protein S29 n=3 Tax=Oryzias TaxID=8089 RepID=A0A3P9IV47_ORYLA)

HSP 1 Score: 102 bits (253), Expect = 2.500e-27
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 MGSKALVNSHPKKFGKGGRFCRVCSNQHGLIRKYGLNMCRQCFRVYAKDIGFTKVRE 171
            MG + L  SHP+KFG+G R CRVCSN+HGLIRKYGLNMCRQCFR YAKDIGF KVR 
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFVKVRS 57
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BLAST of mRNA_H-elongata_contig48370.11987.1 vs. uniprot
Match: A0A3B3DEW7_ORYME (40S ribosomal protein S29 n=1 Tax=Oryzias melastigma TaxID=30732 RepID=A0A3B3DEW7_ORYME)

HSP 1 Score: 102 bits (253), Expect = 3.770e-27
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 MGSKALVNSHPKKFGKGGRFCRVCSNQHGLIRKYGLNMCRQCFRVYAKDIGFTKVRE 171
            MG + L  SHP+KFG+G R CRVCSN+HGLIRKYGLNMCRQCFR YAKDIGF KVR 
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFVKVRS 57
[Close]
BLAST of mRNA_H-elongata_contig48370.11987.1 vs. uniprot
Match: L7N1Q0_MYOLU (40S ribosomal protein S29 n=2 Tax=Amniota TaxID=32524 RepID=L7N1Q0_MYOLU)

HSP 1 Score: 101 bits (251), Expect = 4.010e-27
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 MGSKALVNSHPKKFGKGGRFCRVCSNQHGLIRKYGLNMCRQCFRVYAKDIGFTKVR 168
            MG + L  SHP+KFG+G R CRVCSN+HGLIRKYGLNMCRQCFR YAKDIGF KVR
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKVR 56
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BLAST of mRNA_H-elongata_contig48370.11987.1 vs. uniprot
Match: M3Y0Q0_MUSPF (40S ribosomal protein S29 n=14 Tax=cellular organisms TaxID=131567 RepID=M3Y0Q0_MUSPF)

HSP 1 Score: 101 bits (251), Expect = 4.550e-27
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 MGSKALVNSHPKKFGKGGRFCRVCSNQHGLIRKYGLNMCRQCFRVYAKDIGFTKVR 168
            MG + L  SHP+KFG+G R CRVCSN+HGLIRKYGLNMCRQCFR YAKDIGF KVR
Sbjct:    6 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKVR 61
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BLAST of mRNA_H-elongata_contig48370.11987.1 vs. uniprot
Match: UPI00090E0E50 (Uncharacterized protein n=1 Tax=Xenopus laevis TaxID=8355 RepID=UPI00090E0E50)

HSP 1 Score: 101 bits (252), Expect = 4.930e-27
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 MGSKALVNSHPKKFGKGGRFCRVCSNQHGLIRKYGLNMCRQCFRVYAKDIGFTKV 165
            MG + L  SHP+KFG+G R CRVCSN+HGLIRKYGLNMCRQCFR YAKDIGFTKV
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFTKV 55
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BLAST of mRNA_H-elongata_contig48370.11987.1 vs. uniprot
Match: G5BW63_HETGA (40S ribosomal protein S29 n=2 Tax=Rodentia TaxID=9989 RepID=G5BW63_HETGA)

HSP 1 Score: 101 bits (251), Expect = 5.190e-27
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 MGSKALVNSHPKKFGKGGRFCRVCSNQHGLIRKYGLNMCRQCFRVYAKDIGFTKVR 168
            MG + L  SHP+KFG+G R CRVCSN+HGLIRKYGLNMCRQCFR YAKDIGF KVR
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKVR 56
[Close]
BLAST of mRNA_H-elongata_contig48370.11987.1 vs. uniprot
Match: A0A4D9E7Q6_9SAUR (40S ribosomal protein S29 n=1 Tax=Platysternon megacephalum TaxID=55544 RepID=A0A4D9E7Q6_9SAUR)

HSP 1 Score: 101 bits (251), Expect = 5.330e-27
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 MGSKALVNSHPKKFGKGGRFCRVCSNQHGLIRKYGLNMCRQCFRVYAKDIGFTKVR 168
            MG + L  SHP+KFG+G R CRVCSN+HGLIRKYGLNMCRQCFR YAKDIGF KVR
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKVR 56
[Close]
BLAST of mRNA_H-elongata_contig48370.11987.1 vs. uniprot
Match: A0A8C4LI93_EQUAS (40S ribosomal protein S29 n=1 Tax=Equus asinus asinus TaxID=83772 RepID=A0A8C4LI93_EQUAS)

HSP 1 Score: 101 bits (252), Expect = 5.990e-27
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 MGSKALVNSHPKKFGKGGRFCRVCSNQHGLIRKYGLNMCRQCFRVYAKDIGFTKVR 168
            MG + L  SHP+KFG+G R CRVCSN+HGLIRKYGLNMCRQCFR YAKDIGF KVR
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFVKVR 56
[Close]
BLAST of mRNA_H-elongata_contig48370.11987.1 vs. uniprot
Match: A0A8C8VN91_9SAUR (40S ribosomal protein S29 n=1 Tax=Pelusios castaneus TaxID=367368 RepID=A0A8C8VN91_9SAUR)

HSP 1 Score: 101 bits (252), Expect = 6.160e-27
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 MGSKALVNSHPKKFGKGGRFCRVCSNQHGLIRKYGLNMCRQCFRVYAKDIGFTKVR 168
            MG + L  SHP+KFG+G R CRVCSN+HGLIRKYGLNMCRQCFR YAKDIGF KVR
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFVKVR 56
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48370.11987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJK2_ECTSI1.380e-3090.74Similar to ribosomal protein S29 n=1 Tax=Ectocarpu... [more]
A0A3P9IV47_ORYLA2.500e-2777.1940S ribosomal protein S29 n=3 Tax=Oryzias TaxID=80... [more]
A0A3B3DEW7_ORYME3.770e-2777.1940S ribosomal protein S29 n=1 Tax=Oryzias melastig... [more]
L7N1Q0_MYOLU4.010e-2778.5740S ribosomal protein S29 n=2 Tax=Amniota TaxID=32... [more]
M3Y0Q0_MUSPF4.550e-2778.5740S ribosomal protein S29 n=14 Tax=cellular organi... [more]
UPI00090E0E504.930e-2780.00Uncharacterized protein n=1 Tax=Xenopus laevis Tax... [more]
G5BW63_HETGA5.190e-2778.5740S ribosomal protein S29 n=2 Tax=Rodentia TaxID=9... [more]
A0A4D9E7Q6_9SAUR5.330e-2778.5740S ribosomal protein S29 n=1 Tax=Platysternon meg... [more]
A0A8C4LI93_EQUAS5.990e-2778.5740S ribosomal protein S29 n=1 Tax=Equus asinus asi... [more]
A0A8C8VN91_9SAUR6.160e-2778.5740S ribosomal protein S29 n=1 Tax=Pelusios castane... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48370contigH-elongata_contig48370:2259..2435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue1.2e-22
Seed eggNOG ortholog2880.D7FJK2
Preferred namerps29
KEGG koko:K02980,ko:K20308
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0042788,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.ribosomal protein
EggNOG OGsCOG0199@1,KOG3506@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionsimilar to 40S ribosomal protein S29
Ec32 orthologEc-04_006420.1
Exons1
Model size177
Cds size177
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930796.762884-CDS-H-elongata_contig48370:2258..24351622930796.762884-CDS-H-elongata_contig48370:2258..2435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48370 2259..2435 +
1691679574.1826746-CDS-H-elongata_contig48370:2258..24351691679574.1826746-CDS-H-elongata_contig48370:2258..2435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48370 2259..2435 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48370.11987.1prot_H-elongata_contig48370.11987.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48370 2259..2435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48370.11987.1

>prot_H-elongata_contig48370.11987.1 ID=prot_H-elongata_contig48370.11987.1|Name=mRNA_H-elongata_contig48370.11987.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
MGSKALVNSHPKKFGKGGRFCRVCSNQHGLIRKYGLNMCRQCFRVYAKDI
GFTKVREW*
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mRNA from alignment at H-elongata_contig48370:2259..2435+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48370.11987.1 ID=mRNA_H-elongata_contig48370.11987.1|Name=mRNA_H-elongata_contig48370.11987.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig48370:2259..2435+ (Himanthalia elongata Himel1 dioecious)
ATGGGTTCCAAGGCTCTGGTGAACTCGCATCCTAAGAAATTCGGCAAAGG
CGGACGCTTCTGCCGAGTCTGCTCCAACCAGCACGGCTTGATCCGCAAGT
ATGGGCTGAACATGTGTCGCCAGTGCTTCCGCGTGTACGCGAAAGACATC
GGGTTCACGAAGGTGAGGGAATGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig48370:2259..2435+

>mRNA_H-elongata_contig48370.11987.1 ID=mRNA_H-elongata_contig48370.11987.1|Name=mRNA_H-elongata_contig48370.11987.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig48370:2259..2435+ (Himanthalia elongata Himel1 dioecious)
ATGGGTTCCAAGGCTCTGGTGAACTCGCATCCTAAGAAATTCGGCAAAGG
CGGACGCTTCTGCCGAGTCTGCTCCAACCAGCACGGCTTGATCCGCAAGT
ATGGGCTGAACATGTGTCGCCAGTGCTTCCGCGTGTACGCGAAAGACATC
GGGTTCACGAAGGTGAGGGAATGGTGAATGGGTTCCAAGGCTCTGGTGAA
CTCGCATCCTAAGAAATTCGGCAAAGGCGGACGCTTCTGCCGAGTCTGCT
CCAACCAGCACGGCTTGATCCGCAAGTATGGGCTGAACATGTGTCGCCAG
TGCTTCCGCGTGTACGCGAAAGACATCGGGTTCACGAAGGTGAGGGAATG
GTGA
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