mRNA_H-elongata_contig48322.11980.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48322.11980.1
Unique NamemRNA_H-elongata_contig48322.11980.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig48322.11980.1 vs. uniprot
Match: D8LC33_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC33_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 2.360e-50
Identity = 108/211 (51.18%), Postives = 138/211 (65.40%), Query Frame = 1 
Query:    1 KVVQFDAETGAMALDRWNLYQCGVFRYSCALENVSKLEITEGMVYMMSAHAFEHLRQTKEYGLRVLLSLPVHPGRKSS----SPLPNANAPV-------AATAIEAPGVGAISSSGXXXXHAEASAAGASFPPTGSRRRRWDVFF-------------GGR----RPMARCAASGVGGFLYLDLLFGRKASDNRKLRGPVELVNDLLQRFA 549
            +VV+FDA++GAMALDRWNL+ CGVFRYSCALEN+SK+EITEG VYMMSAHAFEHLRQTKE+GLRV+ S+P+   + ++    SP PN NA +       ++ + +  G+ A+S +      A A+A  A+  P   RRRRW V F             GGR    RP AR   S  G  +YL+LLFG+K  D+R LR PVE+VN+LL RFA
Sbjct:  156 QVVEFDADSGAMALDRWNLFHCGVFRYSCALENISKVEITEGNVYMMSAHAFEHLRQTKEFGLRVIFSVPLGASQAATAHPRSPRPN-NAGMNFSDPGGSSPSSDGDGISAVSGTVGGAPVARAAARRAAGAP---RRRRWGVLFRRLLLCGRAGWCFGGRGWWRRPAARGVLSTSGELMYLNLLFGKKELDDRNLRRPVEMVNELLLRFA 362
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BLAST of mRNA_H-elongata_contig48322.11980.1 vs. uniprot
Match: A0A6H5JJL0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJL0_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 2.810e-47
Identity = 107/210 (50.95%), Postives = 135/210 (64.29%), Query Frame = 1 
Query:    1 KVVQFDAETGAMALDRWNLYQCGVFRYSCALENVSKLEITEGMVYMMSAHAFEHLRQTKEYGLRVLLSLPVHPGRKSS----SPLP-NANAPVAATAIEAP-----GVGAISSSGXXXXHAEASAAGASFPPTGSRRRRWDVFF-------------GGR----RPMARCAASGVGGFLYLDLLFGRKASDNRKLRGPVELVNDLLQRFA 549
            +VV+FDA++GAMALDRWNL+ CGVFRYSCALEN+SK+EITEG VYMMSAHAFEHLRQTKE+GLRV+ S+P+   ++++    SP P NA   ++ T   +P     G+  +S +      A  +A  A   P   RRRRW V F             GGR    RP AR   S  G  +YL+LLFG+K  D+R LR PVE+VN+LL RFA
Sbjct:  354 EVVEFDADSGAMALDRWNLFNCGVFRYSCALENISKIEITEGNVYMMSAHAFEHLRQTKEFGLRVIFSVPLGASQETTAHPRSPRPSNAAMNLSDTDGSSPSSDGDGISGVSGTVGGAPVARGTARRAVGAP---RRRRWGVLFRRLLLCGRAGWCFGGRGWWRRPAARGVLSTSGELMYLNLLFGKKELDDRNLRRPVEMVNELLLRFA 560
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BLAST of mRNA_H-elongata_contig48322.11980.1 vs. uniprot
Match: A0A7S2Y0H0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0H0_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.710e-5
Identity = 30/74 (40.54%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:    1 KVVQFDAETGAMALDRWNLYQCGVFRYSCALENVSKLEITEGMVYMMSA---HAFEHLRQTKEYGLRVLLSLPV 213
            +V  FDAE+G   L+R NL       Y+CALEN+S L+I    V+  ++   H   HL + +E+ LRVLL  P+
Sbjct:  214 EVAVFDAESGVFRLERSNLVSRPQVLYTCALENISALQIAGDTVFTFTSSRRHTDNHLMERQEFSLRVLLCRPM 287
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48322.11980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LC33_ECTSI2.360e-5051.18RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JJL0_9PHAE2.810e-4750.95RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S2Y0H0_9STRA1.710e-540.54Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48322contigH-elongata_contig48322:2429..4001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-20_004260.1
Exons3
Model size555
Cds size555
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48322.11980.1prot_H-elongata_contig48322.11980.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48322 2429..4001 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930796.1389465-CDS-H-elongata_contig48322:2428..25511622930796.1389465-CDS-H-elongata_contig48322:2428..2551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48322 2429..2551 +
1691679573.978335-CDS-H-elongata_contig48322:2428..25511691679573.978335-CDS-H-elongata_contig48322:2428..2551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48322 2429..2551 +
1622930796.1545546-CDS-H-elongata_contig48322:3254..35621622930796.1545546-CDS-H-elongata_contig48322:3254..3562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48322 3255..3562 +
1691679573.988387-CDS-H-elongata_contig48322:3254..35621691679573.988387-CDS-H-elongata_contig48322:3254..3562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48322 3255..3562 +
1622930796.1730118-CDS-H-elongata_contig48322:3877..40011622930796.1730118-CDS-H-elongata_contig48322:3877..4001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48322 3878..4001 +
1691679574.000608-CDS-H-elongata_contig48322:3877..40011691679574.000608-CDS-H-elongata_contig48322:3877..4001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48322 3878..4001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48322.11980.1

>prot_H-elongata_contig48322.11980.1 ID=prot_H-elongata_contig48322.11980.1|Name=mRNA_H-elongata_contig48322.11980.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=185bp
KVVQFDAETGAMALDRWNLYQCGVFRYSCALENVSKLEITEGMVYMMSAH
AFEHLRQTKEYGLRVLLSLPVHPGRKSSSPLPNANAPVAATAIEAPGVGA
ISSSGTGIGHAEASAAGASFPPTGSRRRRWDVFFGGRRPMARCAASGVGG
FLYLDLLFGRKASDNRKLRGPVELVNDLLQRFAK*
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mRNA from alignment at H-elongata_contig48322:2429..4001+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48322.11980.1 ID=mRNA_H-elongata_contig48322.11980.1|Name=mRNA_H-elongata_contig48322.11980.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1573bp|location=Sequence derived from alignment at H-elongata_contig48322:2429..4001+ (Himanthalia elongata Himel1 dioecious)
AAGGTGGTGCAGTTCGACGCCGAGACGGGGGCCATGGCGCTCGACCGGTG
GAACCTGTATCAGTGCGGCGTGTTCCGCTATTCCTGCGCCCTGGAAAATG
TCAGCAAGCTCGAGATAACCGAGGTGTGTCCGCCCCTCTCCCCGGCCCCT
TTCTTACTCTTGGTGGTGCCTGCCTTTCCCTCGTCTCGTCCTTAATACTC
CTTATATACTACTGTATACATAATACCGTAACTGATATCTCGGCTTGAAA
ATTTAAATTTTCCCCTTAAATACGTATTCACATTCGACATGTTTATATAC
GTCTAAATATAGCATATGTGTATACGTACAGTGGGTGTGTGATCATCAAT
GTACTGAGTGGACTATACTATTCTCTAGTGTACTCTAGTGTACTTCGCGC
CCAGGTGGTTCAAGGGATAAACCTGCACGATAACGTTTACAGGAGTCCTG
GGTTTGAATCTATAGATACATTGACATCTATTTGTACATCTATTTGTCTG
TATATATATACTTGTATATCTTTGGTTTTGATTTTTCATGAAAATAACCA
AGGTTGGACCAGAGATTTACATACGTACCATAGTATATCTATCTATCTAT
CTATCTATCTATATTGTGTGTGCGTGTGTGACGTCAACTGCCTCCTGTAC
CAATTTAAGTAGGTCCACGAGTTTTCCCCCTCCCTCTGTCACCTATTGAT
GGGGACAAGGGAAAATTATTTTCCCTGTTGAGCTGACCACGAGCAGAAAG
CAACCAACTCCGGTTGATCTTCTGCTAAATGTGTGACCAACAACAACATA
TATGTATGTACCCTACGCGACCCCAGGGGATGGTGTACATGATGTCCGCC
CACGCCTTCGAGCACCTGCGACAGACTAAGGAGTACGGCCTGCGCGTCCT
CCTGTCCCTTCCGGTCCACCCGGGGAGGAAGTCATCTTCGCCCCTTCCAA
ACGCGAACGCCCCCGTTGCCGCGACCGCAATAGAGGCTCCCGGTGTTGGC
GCTATTAGTAGTAGCGGCACGGGGATCGGTCACGCGGAGGCGAGCGCTGC
TGGTGCTTCTTTCCCCCCCACTGGATCGAGGCGTCGACGGTGGGACGTAT
TTTTCGGCGGTAGGAGACCGATGGCGAGGTGCGCGTTTGAAAGAGTGACC
GATCCTTCTTTCCGGCGAGTGTCCTGATCCTGATCCTGACACGGTATGGT
CTGGCCACGCGGGGTGAAGGACGGACGGACGGACGAGATATATTGCATTT
TGTTTTGCCCATCACAAGGGACTGTCTGGTTTATTTATTAGCACATTTTA
TATACGAATGATTTTGGCGGCGCTGGAGTGTGCCGCCAGGTCATCCTCGT
CGCATGCGTTGCGGGACTAATTATTCCTCGACGTGATCGTGGAAAGCATC
CACCGCCCTCCTACCCCCCTCATGTCCCCTGCTGCTGCCGCTTCAGAAGG
GCGAGCGGCGTCGGAGGGTTTTTGTATCTCGATCTACTTTTCGGAAGGAA
GGCGTCGGATAATCGCAAGCTACGCGGACCTGTGGAGCTGGTGAATGACC
TCCTGCAGCGATTCGCCAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig48322:2429..4001+

>mRNA_H-elongata_contig48322.11980.1 ID=mRNA_H-elongata_contig48322.11980.1|Name=mRNA_H-elongata_contig48322.11980.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1110bp|location=Sequence derived from alignment at H-elongata_contig48322:2429..4001+ (Himanthalia elongata Himel1 dioecious)
AAGGTGGTGCAGTTCGACGCCGAGACGGGGGCCATGGCGCTCGACCGGTG
GAACCTGTATCAGTGCGGCGTGTTCCGCTATTCCTGCGCCCTGGAAAATG
TCAGCAAGCTCGAGATAACCGAGAAGGTGGTGCAGTTCGACGCCGAGACG
GGGGCCATGGCGCTCGACCGGTGGAACCTGTATCAGTGCGGCGTGTTCCG
CTATTCCTGCGCCCTGGAAAATGTCAGCAAGCTCGAGATAACCGAGGGGA
TGGTGTACATGATGTCCGCCCACGCCTTCGAGCACCTGCGACAGACTAAG
GAGTACGGCCTGCGCGTCCTCCTGTCCCTTCCGGTCCACCCGGGGAGGAA
GTCATCTTCGCCCCTTCCAAACGCGAACGCCCCCGTTGCCGCGACCGCAA
TAGAGGCTCCCGGTGTTGGCGCTATTAGTAGTAGCGGCACGGGGATCGGT
CACGCGGAGGCGAGCGCTGCTGGTGCTTCTTTCCCCCCCACTGGATCGAG
GCGTCGACGGTGGGACGTATTTTTCGGCGGTAGGAGACCGATGGCGAGGT
GCGCGGGATGGTGTACATGATGTCCGCCCACGCCTTCGAGCACCTGCGAC
AGACTAAGGAGTACGGCCTGCGCGTCCTCCTGTCCCTTCCGGTCCACCCG
GGGAGGAAGTCATCTTCGCCCCTTCCAAACGCGAACGCCCCCGTTGCCGC
GACCGCAATAGAGGCTCCCGGTGTTGGCGCTATTAGTAGTAGCGGCACGG
GGATCGGTCACGCGGAGGCGAGCGCTGCTGGTGCTTCTTTCCCCCCCACT
GGATCGAGGCGTCGACGGTGGGACGTATTTTTCGGCGGTAGGAGACCGAT
GGCGAGGTGCGCGGCGAGCGGCGTCGGAGGGTTTTTGTATCTCGATCTAC
TTTTCGGAAGGAAGGCGTCGGATAATCGCAAGCTACGCGGACCTGTGGAG
CTGGTGAATGACCTCCTGCAGCGATTCGCCAAGTGAGGCGAGCGGCGTCG
GAGGGTTTTTGTATCTCGATCTACTTTTCGGAAGGAAGGCGTCGGATAAT
CGCAAGCTACGCGGACCTGTGGAGCTGGTGAATGACCTCCTGCAGCGATT
CGCCAAGTGA
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