mRNA_H-elongata_contig48312.11979.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig48312.11979.1
Unique Name	mRNA_H-elongata_contig48312.11979.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig48312.11979.1 vs. uniprot

BLAST of mRNA_H-elongata_contig48312.11979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig48312	contig	H-elongata_contig48312:1226..1756 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	531
Cds size	327
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig48312.11979.1	prot_H-elongata_contig48312.11979.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig48312 1353..1679 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930796.06695-UTR-H-elongata_contig48312:1225..1352	1622930796.06695-UTR-H-elongata_contig48312:1225..1352	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig48312 1226..1352 +
1691679573.9404721-UTR-H-elongata_contig48312:1225..1352	1691679573.9404721-UTR-H-elongata_contig48312:1225..1352	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig48312 1226..1352 +
1622930796.0991514-UTR-H-elongata_contig48312:1679..1756	1622930796.0991514-UTR-H-elongata_contig48312:1679..1756	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig48312 1680..1756 +
1691679573.9673617-UTR-H-elongata_contig48312:1679..1756	1691679573.9673617-UTR-H-elongata_contig48312:1679..1756	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig48312 1680..1756 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930796.0862765-CDS-H-elongata_contig48312:1352..1679	1622930796.0862765-CDS-H-elongata_contig48312:1352..1679	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig48312 1353..1679 +
1691679573.9520729-CDS-H-elongata_contig48312:1352..1679	1691679573.9520729-CDS-H-elongata_contig48312:1352..1679	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig48312 1353..1679 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig48312:1226..1756+
coding sequence from alignment at H-elongata_contig48312:1226..1756+

protein sequence of mRNA_H-elongata_contig48312.11979.1

>prot_H-elongata_contig48312.11979.1 ID=prot_H-elongata_contig48312.11979.1|Name=mRNA_H-elongata_contig48312.11979.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
MMGHAGTHANAVAVTTMPELAAAVATTKVAGIEGGDTPATNPVALREGVG
GIEAEVPAVTVANAAAMVTAAAMMIVPRATRIRQIGNGAEGARGSCSGSP
VWLRKQRK*

mRNA from alignment at H-elongata_contig48312:1226..1756+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig48312.11979.1 ID=mRNA_H-elongata_contig48312.11979.1|Name=mRNA_H-elongata_contig48312.11979.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=531bp|location=Sequence derived from alignment at H-elongata_contig48312:1226..1756+ (Himanthalia elongata Himel1 dioecious)
CTTCGTGGCGGATGACGCGGCGACGGGCGTGGCAGAGGAGGGAGCTGAAG
GGAGCCTCGCGCTACCAGTACAGACCAAAGGGGAGGAACCGATCGCACCG
GTAGCAGCCGCACGATCAGCGGAAGCGATGATGGGGCATGCGGGAACTCA
CGCGAACGCGGTTGCAGTGACCACGATGCCGGAGCTGGCCGCCGCTGTCG
CGACAACGAAGGTGGCAGGAATTGAGGGTGGGGATACACCGGCCACCAAC
CCCGTAGCGTTGAGGGAGGGGGTGGGAGGGATTGAGGCGGAAGTACCCGC
CGTGACAGTGGCGAATGCGGCGGCGATGGTTACGGCAGCAGCGATGATGA
TCGTCCCGCGAGCGACGAGAATCCGCCAGATCGGAAACGGTGCGGAAGGG
GCAAGAGGGAGTTGTAGCGGTAGTCCGGTGTGGTTGCGTAAGCAACGCAA
GTAGGATAGGCCACTCCAGCGTCCCCAGGGATAGCTCCCCATAAGGGGGG
AGTATTTGGCGCCCCCTTACGTGTCTTGCCG

Coding sequence (CDS) from alignment at H-elongata_contig48312:1226..1756+

>mRNA_H-elongata_contig48312.11979.1 ID=mRNA_H-elongata_contig48312.11979.1|Name=mRNA_H-elongata_contig48312.11979.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig48312:1226..1756+ (Himanthalia elongata Himel1 dioecious)
ATGATGGGGCATGCGGGAACTCACGCGAACGCGGTTGCAGTGACCACGAT
GCCGGAGCTGGCCGCCGCTGTCGCGACAACGAAGGTGGCAGGAATTGAGG
GTGGGGATACACCGGCCACCAACCCCGTAGCGTTGAGGGAGGGGGTGGGA
GGGATTGAGGCGGAAGTACCCGCCGTGACAGTGGCGAATGCGGCGGCGAT
GGTTACGGCAGCAGCGATGATGATCGTCCCGCGAGCGACGAGAATCCGCC
AGATCGGAAACGGTGCGGAAGGGGCAAGAGGGAGTTGTAGCGGTAGTCCG
GTGTGGTTGCGTAAGCAACGCAAGTAGATGATGGGGCATGCGGGAACTCA
CGCGAACGCGGTTGCAGTGACCACGATGCCGGAGCTGGCCGCCGCTGTCG
CGACAACGAAGGTGGCAGGAATTGAGGGTGGGGATACACCGGCCACCAAC
CCCGTAGCGTTGAGGGAGGGGGTGGGAGGGATTGAGGCGGAAGTACCCGC
CGTGACAGTGGCGAATGCGGCGGCGATGGTTACGGCAGCAGCGATGATGA
TCGTCCCGCGAGCGACGAGAATCCGCCAGATCGGAAACGGTGCGGAAGGG
GCAAGAGGGAGTTGTAGCGGTAGTCCGGTGTGGTTGCGTAAGCAACGCAA
GTAG