mRNA_H-elongata_contig48294.11975.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48294.11975.1
Unique NamemRNA_H-elongata_contig48294.11975.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48294.11975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48294contigH-elongata_contig48294:3399..3786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size388
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930795.7412868-CDS-H-elongata_contig48294:3398..37461622930795.7412868-CDS-H-elongata_contig48294:3398..3746Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48294 3399..3746 +
1691679573.832861-CDS-H-elongata_contig48294:3398..37461691679573.832861-CDS-H-elongata_contig48294:3398..3746Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48294 3399..3746 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930795.7576597-UTR-H-elongata_contig48294:3746..37861622930795.7576597-UTR-H-elongata_contig48294:3746..3786Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48294 3747..3786 +
1691679573.8423731-UTR-H-elongata_contig48294:3746..37861691679573.8423731-UTR-H-elongata_contig48294:3746..3786Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48294 3747..3786 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48294.11975.1prot_H-elongata_contig48294.11975.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48294 3399..3746 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48294.11975.1

>prot_H-elongata_contig48294.11975.1 ID=prot_H-elongata_contig48294.11975.1|Name=mRNA_H-elongata_contig48294.11975.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
SSPAALLPPLPSVGLLVFFPPVLIILLFIIIIFFVIVVVALFICLLLLSL
GPGARHTAAHSAIPRHAPTCARGETAGVATGAKLPGFELLQHLVLHLRHS
IVILELLCPLCAGLN*
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mRNA from alignment at H-elongata_contig48294:3399..3786+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48294.11975.1 ID=mRNA_H-elongata_contig48294.11975.1|Name=mRNA_H-elongata_contig48294.11975.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=388bp|location=Sequence derived from alignment at H-elongata_contig48294:3399..3786+ (Himanthalia elongata Himel1 dioecious)
TCCTCCCCTGCTGCCCTTCTACCACCCCTTCCGTCCGTCGGCCTCCTCGT
CTTCTTTCCCCCCGTCCTGATCATCCTGCTCTTCATCATCATCATATTCT
TCGTCATCGTCGTCGTCGCCCTCTTCATCTGCCTCCTCCTGCTCTCCTTG
GGGCCGGGTGCCCGGCACACGGCTGCCCACAGCGCCATTCCCCGACACGC
CCCTACGTGCGCCAGGGGGGAGACTGCAGGTGTCGCTACGGGGGCGAAGC
TTCCCGGCTTTGAACTTCTTCAACACCTTGTTCTCCATCTCCGACACAGT
ATAGTCATTCTTGAACTTCTCTGCCCTCTCTGTGCCGGCCTCAACTAGTG
TTCCTCGTTGTGGCATCTGGCGACGTGGTCGATCACAC
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Coding sequence (CDS) from alignment at H-elongata_contig48294:3399..3786+

>mRNA_H-elongata_contig48294.11975.1 ID=mRNA_H-elongata_contig48294.11975.1|Name=mRNA_H-elongata_contig48294.11975.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig48294:3399..3786+ (Himanthalia elongata Himel1 dioecious)
TCCTCCCCTGCTGCCCTTCTACCACCCCTTCCGTCCGTCGGCCTCCTCGT
CTTCTTTCCCCCCGTCCTGATCATCCTGCTCTTCATCATCATCATATTCT
TCGTCATCGTCGTCGTCGCCCTCTTCATCTGCCTCCTCCTGCTCTCCTTG
GGGCCGGGTGCCCGGCACACGGCTGCCCACAGCGCCATTCCCCGACACGC
CCCTACGTGCGCCAGGGGGGAGACTGCAGGTGTCGCTACGGGGGCGAAGC
TTCCCGGCTTTGAACTTCTTCAACACCTTGTTCTCCATCTCCGACACAGT
ATAGTCATTCTTGAACTTCTCTGCCCTCTCTGTGCCGGCCTCAACTAGTC
CTCCCCTGCTGCCCTTCTACCACCCCTTCCGTCCGTCGGCCTCCTCGTCT
TCTTTCCCCCCGTCCTGATCATCCTGCTCTTCATCATCATCATATTCTTC
GTCATCGTCGTCGTCGCCCTCTTCATCTGCCTCCTCCTGCTCTCCTTGGG
GCCGGGTGCCCGGCACACGGCTGCCCACAGCGCCATTCCCCGACACGCCC
CTACGTGCGCCAGGGGGGAGACTGCAGGTGTCGCTACGGGGGCGAAGCTT
CCCGGCTTTGAACTTCTTCAACACCTTGTTCTCCATCTCCGACACAGTAT
AGTCATTCTTGAACTTCTCTGCCCTCTCTGTGCCGGCCTCAACTAG
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