mRNA_H-elongata_contig48293.11974.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig48293.11974.1 vs. uniprot
Match: D8LQI0_ECTSI (JmjC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQI0_ECTSI) HSP 1 Score: 410 bits (1053), Expect = 1.990e-139 Identity = 202/334 (60.48%), Postives = 248/334 (74.25%), Query Frame = 1
Query: 1 ACLKRVDVKGLSPLQIREQVDFSTPCILTGALKLGTCETWCDTLLEGLGDSEVDYQIRRNDNGRSELFRSTLADFIHDLE-ESNHDQSWYLLEENLLDNPRVRPALEPPLRELQRLLGWDEFDLFPCAVRPQKSCLIVGGLGARSFLHGDPMEWIGWNVLLEGRKLWTFLPPSPELDAPLGTYRLAPNAFGAHNISAGWQSDLDLYRRGKHTARGRESVSWSPSAPEAQDLMGLATGGVQGPGDVVIIPPRHWHQVYHLEPSVAVASQYMDHNVRRGVFRHILDWCGAAEGAL-PAEFDKLTPAQQVQHVLKAAFVAQLGQKKGLEALATLEPP 996
A L R+DV GLS Q+ + VDFS PCILTG L CE+WCD LL+ LG+ +QIR N++GRSE+F ++L DF+ L+ ES H++SWYLL+E+LLD P+ RP L L + Q LLG DEF LFP +VRPQ C IVGG+GARSFLH DPMEW+GWNVLLEGRKLWTFLPP +LD+ LGTYRLAPNAFG+HN+SAGWQS++DLY+ G TA SW P+A E Q++M A GVQ G++V+IPPRHWHQVYHLEPS+AVASQYMD VR VFRH+LDWCGA++ L + FD L Q++ VLK A VA+ G +KGLEA L+ P
Sbjct: 82 ASLPRIDVTGLSRAQVADLVDFSRPCILTGVLSSPDCESWCDGLLQDLGEETCAFQIRDNESGRSEVFEASLMDFVKRLQDESTHNESWYLLDEHLLDFPQARPELGALLEKPQDLLGTDEFQLFPPSVRPQNLCTIVGGVGARSFLHSDPMEWMGWNVLLEGRKLWTFLPPLADLDSSLGTYRLAPNAFGSHNVSAGWQSNVDLYQHGAATA------SW-PTAGEGQEVMQHAVSGVQEAGELVLIPPRHWHQVYHLEPSLAVASQYMDFRVRDRVFRHMLDWCGASDDVLLSSRFDALALRDQIKEVLKVALVARHGGEKGLEAFDGLDDP 408
BLAST of mRNA_H-elongata_contig48293.11974.1 vs. uniprot
Match: A0A7S2R9P6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9P6_9STRA) HSP 1 Score: 205 bits (521), Expect = 7.740e-59 Identity = 136/379 (35.88%), Postives = 183/379 (48.28%), Query Frame = 1
Query: 19 DVKGLSPLQIREQVDFSTPCILTGAL--KLGTC------ETWCDTLLEGLGDSEVDYQIRRNDNGRSELFRSTLADFIHDLEESNHDQSWYLLEENLLDNPRVRPALEPPLRELQRLLGWDEFDLFPCAVRPQKSCLIVGGLGARSFLHGDPMEWIGWNVLLEGRKLWTFLPPSPELDAPLGTYRLAPNAF--GAHNISAGWQSDLDLYRRGKHTARGRESVSWSPSAPE-------AQDL-MGLATGG-------------------------------VQGPGDVVIIPPRHWHQVYHLEPSVAVASQYMDHNVRRGVFRHILDWCGAAEGALPAEFDKLTPAQ----QVQHVLKAAFVAQLGQKKGLEALATLEPP 996
DV P Q R +VD ++ AL +G E W E V + + G + +L+ F+ +SNH S+YLL+E+LL + P+L L + G D F LFP ++P++ CL++GG G+RS LH DPMEW GWN LLEG KLWTFLPP + LG+ R+ + G +NISAGWQSD+DLY K +GR S W PSA A+D +GL G +Q GD+V IPP WHQ YHLEPSVAVA QY+ + V H+ WC A+ G + F ++ + +Q +L A AQ GQ KG E ++L P
Sbjct: 78 DVVTGRPEQFRSEVDGRRVGVIKNALWGDMGAARSAEAMEAWTAAFFEAFAQERVTCHTKDSTTGETTALDLSLSHFVDLAFKSNHQHSYYLLDESLLSSA---PSLASSLTLPEAWFGKDHFGLFPAELQPKQPCLVMGGAGSRSSLHADPMEWTGWNYLLEGSKLWTFLPPGKGTETALGSRRVLSGEWDGGKYNISAGWQSDVDLYME-KIAGKGR-SGDW-PSAAALGVMPSIARDYALGLVEGSCNTGHPFMPSNAMVLDALVDGRSLEDGRIAVLQREGDLVHIPPGWWHQTYHLEPSVAVAGQYLSSQNFQKVAAHVCKWCDASIGDAGSHFQQVADTEGYETAIQELLLLALRAQHGQAKGDELFSSLTFP 450
BLAST of mRNA_H-elongata_contig48293.11974.1 vs. uniprot
Match: A0A8J5Y022_DIALT (JmjC domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5Y022_DIALT) HSP 1 Score: 196 bits (497), Expect = 1.530e-56 Identity = 126/305 (41.31%), Postives = 160/305 (52.46%), Query Frame = 1
Query: 73 PCILTGALKLGTC-ETWCDTLLEGLGDSEVDYQIRRNDNGRSELFRSTLADFIHDLEESNHDQSWYLLEENLLDNPRVRPALEPPLRELQRLLGWDEFDL-FPCAVRPQKSCLIVGGLGARSFLHGDPMEWIGWNVLLEGRKLWTFLPPSPELDAPLGTYRLAPNAFGAHN--ISAGWQSDLDLYRRGKHTARGRESVSWSPSA----------------PEAQ---DLMGLATGGVQGPGDVVIIPPRHWHQVYHLEPSVAVASQYMDHNVRRGVFRHILDWCGAAEGALPAEFD-KLTPAQQV 915
P +LT AL G+ ETW D L+E + V+ Q+RR GRS R +L ++H W LL + L + R P LE L L D F+ FP +RP ++C+IVGG GARS LH DP EW+G NV LEGRKLW FLPP PEL A L YRL A+G+ +SAGWQSD DLY + A G ++ S A P+A+ D G VQ G++++IPP WHQ Y+ EPS A QY+D R VF+H+LDW G E D L P +QV
Sbjct: 5 PLLLTHALADGSALETWADRLVEHAAAARVEVQVRR---GRSTELREVTLSGACELAYASHHSEWSLLFDERLVSARA-PQLERELALRPGLFEPDWFEAHFPPELRPSRTCVIVGGEGARSTLHADPFEWVGTNVCLEGRKLWRFLPPEPELSAQLRGYRLPSIAWGSQGGALSAGWQSDFDLYATRRAGAPGARALRDSARADEQLRAMADVRTGLLRPDARLPADAARRLVGCVQRAGELLLIPPGWWHQSYYPEPSFCAAGQYLDSFCRASVFQHVLDW--TRTGRRADEIDASLRPQEQV 303
BLAST of mRNA_H-elongata_contig48293.11974.1 vs. uniprot
Match: W7TWL4_9STRA (F-box protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWL4_9STRA) HSP 1 Score: 189 bits (480), Expect = 2.510e-53 Identity = 113/297 (38.05%), Postives = 163/297 (54.88%), Query Frame = 1
Query: 16 VDVKGLSPLQIREQVDFSTPCILTGAL------KLGTCETWCDTLLEGLGDSEVDYQIRRNDN-GRSELFRSTLADFIHDL-EESNHDQSWYLLEENLLDNPRVRPALEPPLRELQRLLG-WDEFDLFPCAVRPQKSCLIVGGLGARSFLHGDPMEWIGWNVLLEGRKLWTFLPPSPELDAPLGTYRLAPNAFGAHNISAGWQS-DLDLYRRGKHTARGRESVSWSPSAPEAQDLMGLATGGVQGPGDVVIIPPRHWHQVYHLEPSVAVASQYMDHNVRRGVFRHILDWCGAAEGAL 876
+D + L Q + PC+LT A + +T+ DT E D E++ Q++RN + L+ TLA + + ++S H+++WYLL E LL++ + R ++ P R L G D FDLFP +RP+K CLI+GG GARSFLH DP EW G N LLEGRK+WTF PP A LG R+ P A+ +SAGW+S D DLY + G ++ + + + L VQ G++V+IPP HQVYHL+P +++A Q +H + V H+L W + G L
Sbjct: 36 LDARDLPSQQALDAYIKKGPCVLTHAFDKDPNTRKMADDTFSDTFFEEFQDVELEVQLKRNSKIAKPRLYSGTLAGIVDGMMQKSTHEEAWYLLNEKLLEDSQNR-KIKDPFRLPPSLFGKLDYFDLFPQRIRPKKHCLILGGTGARSFLHVDPFEWTGVNYLLEGRKIWTFFPPC---SADLGLKRVLPEAWEGE-VSAGWKSTDFDLYYKVPEIFEGAVTLDLPEVLADVEGVQAL----VQEEGELVVIPPGWAHQVYHLKPGLSLAWQVCNHGNLKNVIMHMLTWAIESGGNL 323
BLAST of mRNA_H-elongata_contig48293.11974.1 vs. uniprot
Match: A0A8J2SEA1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEA1_9STRA) HSP 1 Score: 158 bits (400), Expect = 2.840e-42 Identity = 105/294 (35.71%), Postives = 139/294 (47.28%), Query Frame = 1
Query: 13 RVDVKGLSPLQIREQVDFSTPCILTGALKLGTCETWCDTLLEGLGDSEVDYQIRRNDNGRSELFRSTLADFIHDLEESNHDQSWYLLEENLLDNPRVRPALEPPLRELQRLLGWDEFDLFPCAVRPQKSCLIVGGLGARSFLHGDPMEWIGWNVLLEGRKLWTFLPPSPELDAPLGTYRLAPNAFGAHNISAGWQSDLDLY----------------RRGKHTARGRESVSWSPSAPEAQDLMGLATGGVQGPGDVVIIPPRHWHQVYHLEPSVAVASQYMDHNVRRGVFRHIL 846
R+D K IR +D P + GAL C+ W L+EG GD+ V QI + F + LA+F +D S H+ +L +E LL+ A+ P + W D FP RP +C++ G GARS LH DP +W G ++ LEG K+W FL DA L Y+L AFG + SAG QSD+DLY R G E+ + S P G +Q GDVVI+PP+ WHQ Y LEPS AVASQ+ VF H++
Sbjct: 23 RIDAKDAPA--IRAALDSGQPFVAAGALSPEACDAWTGNLMEGFGDAIVTQQIA------GDPFDAPLAEFFYDALASTHETPHFLFDEALLEGNLRAAAIAPQRAIFEGEESW--LDAFPAERRPADACVVCAGAGARSPLHRDPYDWTGTSLCLEGSKVWRFLLDVD--DADLEAYKLPSEAFG--DDSAGTQSDIDLYCVQEGDWPDAADFEDDRDLVKAKAGPENFTPSTQVP------GRFCTALQFAGDVVIVPPKSWHQTYALEPSCAVASQFCGRRDAPTVFEHMI 296
BLAST of mRNA_H-elongata_contig48293.11974.1 vs. uniprot
Match: F0YQV8_AURAN (Expressed protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQV8_AURAN) HSP 1 Score: 145 bits (367), Expect = 8.570e-38 Identity = 105/278 (37.77%), Postives = 135/278 (48.56%), Query Frame = 1
Query: 13 RVDVKGLSPLQIREQVDFSTPCILTGALKLGTCETWCDTLLEGLGDSEVDYQIRRNDNGRSELFRSTLADFIHDLEESNHDQSWYLLEENLLD-NPRVRPALEPPLRELQRLLGWDE--FDLFPCAVRPQKSCLIVGGLGARSFLHGDPMEWIGWNVLLEGRKLWTFLPPSPELDAPLGTYRLAPNAFGAHNISAGWQSDLDLYRRG---------KHTARGRESVSWSPSAPEAQDLMGLATG----GVQGPGDVVIIPPRHWHQVYHLEPSVAVAS 798
RVD + + I +D P I AL CE W D L+ LGD+ V Q R E L F D S+H +L +E LLD + +R A P R + G + FD FP + RP+ C++ G GARS LH DP +W G ++ +EG K+W F DA LG Y LA AFG SAG QSD DLY R + + +WS +A A D+ T +Q GDVV++PPR WHQ Y LEPS+AVAS
Sbjct: 33 RVDARDHAA--IAAALDAGEPFIAAEALSARDCEAWTDALMMRLGDAPVRRQRR------GEALEMPLGAFFEDALTSSHALPSFLFDEFLLDGDDDLRGAAVGPQRAI---FGGERSWFDHFPESRRPRDGCVVGAGAGARSPLHRDPYDWTGTSLCVEGSKVWRFA--LDVADADLGAYELASEAFGGD--SAGTQSDADLYARRVGDGWPEPYAYDDDPALAATWSAAARFAPDVALPKTARFVTALQRAGDVVVVPPRAWHQTYALEPSLAVAS 295
BLAST of mRNA_H-elongata_contig48293.11974.1 vs. uniprot
Match: A0A812KFH2_9DINO (PSR protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812KFH2_9DINO) HSP 1 Score: 145 bits (365), Expect = 2.780e-37 Identity = 99/301 (32.89%), Postives = 139/301 (46.18%), Query Frame = 1
Query: 79 ILTGALKLGTCETWCDTLLEGLGDSEVDYQIRRND--NGRSELFRSTLADFIHDLEESNHDQSWYLLEENLLDNPRVRPALEPPLRELQRLLGWDEFDLFPCAVRPQKSCLIVGGLGARSFLHGDPMEWIGWNVLLEGRKLWTFLPPSPELDAPLGTYRLAPNAFGAHN-------ISAGWQSDLDLYRRGKHTARGRESVSW---SPSAPEAQDLMGLATG--GVQGPGDVVIIPPRHWHQVYHLEPSVAVASQYMDHNVRRGVFRHILDWCGAAEGALPAEFDKLTPAQQVQHVLKAAF 939
+L + + + C TLLE G EV+Y+ + N ++L L DF+ + S H+ L++EN++ + +L L L D F FP +RP CL+VGG GARS LH DP+ W GWN LL+GRKLW F P P+ +R FG I +GW+SD+DL+ H A S+ SP + + G + VQ PG+ +I P WHQ YHL P+ A Q ++ V HI+ WC E +P E P + VL A
Sbjct: 25 VLPNSFQEASSNFCCKTLLEEAGCQEVEYKRATHGELNLATDLLSKVLCDFVPN---SYHEDPVLLMDENVVSTTSLANSL---LEAAPPFLREDLFCEFPRMLRPAPLCLVVGGRGARSDLHIDPLSWTGWNCLLQGRKLWRFFPDIPQ---NAEAFRPMSRPFGIRKGGAEVCTIGSGWRSDVDLFANRTHPAAEPLCDSFGSLSPDLGQFPHVKGCSAPLEHVQEPGETLIFPGHWWHQTYHLTPTFGFAGQVLNSGNLGRVLGHIIRWC---ELEVPDEAWDQEPKALIAQVLGEAI 313
BLAST of mRNA_H-elongata_contig48293.11974.1 vs. uniprot
Match: A0A812XB14_9DINO (PSR protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812XB14_9DINO) HSP 1 Score: 147 bits (372), Expect = 2.660e-36 Identity = 101/300 (33.67%), Postives = 142/300 (47.33%), Query Frame = 1
Query: 79 ILTGALKLGTCETWCDTLLEGLGDSEVDYQIRRNDNGRSELFRSTLADFIHD-LEESNHDQSWYLLEENLLDNPRVRPALEPPLRELQRLLGWDEFDLFPCAVRPQKSCLIVGGLGARSFLHGDPMEWIGWNVLLEGRKLWTFLPPSPELDAPLGTYRLAPNAFGAHN-------ISAGWQSDLDLYRRGKHTARGR--ESVSW-SPSAPEAQDLMGLATG--GVQGPGDVVIIPPRHWHQVYHLEPSVAVASQYMDHNVRRGVFRHILDWCGAAEGALPAEFDKLTPAQQVQHVLKAAF 939
+L + + + C TLLE G EV+Y +R G L +L+ + D + S H+ L++EN++ + +L L L D F FP +RP + CL+VGG GARS LH DP+ W GWN LL+GRKLW F P P+ +R A FG I +GW+SD+DL+ +TA +S W SP + + G + VQ PG+ +I P WHQ YHL P+ A Q ++ V HI+ WC E +P E P + VL A
Sbjct: 25 VLPNSFQEASSNFCCKTLLEEAGCQEVEY--KRAAQGELSLATDSLSRVLCDFVPNSCHEDPVLLMDENVVSTTSLANSL---LEAAPPFLREDLFCEFPLMLRPAQLCLVVGGQGARSDLHIDPLSWTGWNCLLQGRKLWRFFPDIPQ---HAEAFRPASRPFGIRKGGAEVCTIGSGWRSDVDLFANRTNTAAEPPCDSFGWLSPDLAKFPHVKGCSAPLEHVQEPGETLIFPGHWWHQTYHLTPTFGFAGQVLNSGNLGRVLGHIIRWC---ELEVPDEAWDQEPKAFIAQVLGEAI 313
BLAST of mRNA_H-elongata_contig48293.11974.1 vs. uniprot
Match: A0A835YWS3_9STRA (JmjC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWS3_9STRA) HSP 1 Score: 137 bits (345), Expect = 6.250e-36 Identity = 78/168 (46.43%), Postives = 99/168 (58.93%), Query Frame = 1
Query: 478 LEGRKLWTFLPPSPELDAPLGTYRLAPNAFG-AHNISAGWQSDLDLYRRGKHT-ARGRESVSWSPSAPEA--QDLMGLATGGVQGPGDVVIIPPRHWHQVYHLEPSVAVASQ-YMDHNVRRGVFRHILDWCGAAEGALPAEFDKLTPAQQVQHVLKAAFVAQLGQKKG 966
+EG KLWTFLPP PE L YRL PNA+G ++N+SAGWQS +DLYR + A G + + S +A +D+ VQ G+ V+IPPR WHQV HL PS+AVASQ Y RR +F+HI DWCG A P E P +QV+ VL+ A+ G G
Sbjct: 1 MEGEKLWTFLPPCPE--HLLDGYRLPPNAWGGSYNVSAGWQSPVDLYRPFSESGAHGSDGIMLSAAAAYGVPEDVWARRKQVVQREGETVLIPPRWWHQVIHLAPSIAVASQHYAGARGRRRIFQHIRDWCGCGGSAAPPEIRSWPPQKQVEWVLQEGLCAKHGTDVG 166
BLAST of mRNA_H-elongata_contig48293.11974.1 vs. uniprot
Match: A0A1Q9EEB4_SYMMI (Bifunctional arginine demethylase and lysyl-hydroxylase PSR n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9EEB4_SYMMI) HSP 1 Score: 147 bits (372), Expect = 6.990e-36 Identity = 101/300 (33.67%), Postives = 142/300 (47.33%), Query Frame = 1
Query: 79 ILTGALKLGTCETWCDTLLEGLGDSEVDYQIRRNDNGRSELFRSTLADFIHD-LEESNHDQSWYLLEENLLDNPRVRPALEPPLRELQRLLGWDEFDLFPCAVRPQKSCLIVGGLGARSFLHGDPMEWIGWNVLLEGRKLWTFLPPSPELDAPLGTYRLAPNAFGAHN-------ISAGWQSDLDLYRRGKHTARGR--ESVSW-SPSAPEAQDLMGLATG--GVQGPGDVVIIPPRHWHQVYHLEPSVAVASQYMDHNVRRGVFRHILDWCGAAEGALPAEFDKLTPAQQVQHVLKAAF 939
+L + + + C TLLE G EV+Y +R G L +L+ + D + S H+ L++EN++ + +L L L D F FP +RP + CL+VGG GARS LH DP+ W GWN LL+GRKLW F P P+ +R A FG I +GW+SD+DL+ +TA +S W SP + + G + VQ PG+ +I P WHQ YHL P+ A Q ++ V HI+ WC E +P E P + VL A
Sbjct: 25 VLPNSFQEASSNFCCKTLLEEAGCQEVEY--KRAAQGELSLATDSLSRVLCDFVPNSCHEDPVLLMDENVVSTTSLANSL---LEAAPPFLREDLFCEFPLMLRPAQLCLVVGGQGARSDLHIDPLSWTGWNCLLQGRKLWRFFPDIPQ---HAEAFRPASRPFGIRKGGAEVCTIGSGWRSDVDLFANRTNTAAEPPCDSFGWLSPDLAKFPHVKGCSAPLEHVQEPGETLIFPGHWWHQTYHLTPTFGFAGQVLNSGNLGRVLGHIIRWC---ELEVPDEAWDQEPKAFIAQVLGEAI 313 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48293.11974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig48293.11974.1 >prot_H-elongata_contig48293.11974.1 ID=prot_H-elongata_contig48293.11974.1|Name=mRNA_H-elongata_contig48293.11974.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=333bp ACLKRVDVKGLSPLQIREQVDFSTPCILTGALKLGTCETWCDTLLEGLGDback to top mRNA from alignment at H-elongata_contig48293:334..3432+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig48293.11974.1 ID=mRNA_H-elongata_contig48293.11974.1|Name=mRNA_H-elongata_contig48293.11974.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3099bp|location=Sequence derived from alignment at H-elongata_contig48293:334..3432+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig48293:334..3432+ >mRNA_H-elongata_contig48293.11974.1 ID=mRNA_H-elongata_contig48293.11974.1|Name=mRNA_H-elongata_contig48293.11974.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1998bp|location=Sequence derived from alignment at H-elongata_contig48293:334..3432+ (Himanthalia elongata Himel1 dioecious)back to top |