mRNA_H-elongata_contig48293.11974.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48293.11974.1
Unique NamemRNA_H-elongata_contig48293.11974.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig48293.11974.1 vs. uniprot
Match: D8LQI0_ECTSI (JmjC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQI0_ECTSI)

HSP 1 Score: 410 bits (1053), Expect = 1.990e-139
Identity = 202/334 (60.48%), Postives = 248/334 (74.25%), Query Frame = 1
Query:    1 ACLKRVDVKGLSPLQIREQVDFSTPCILTGALKLGTCETWCDTLLEGLGDSEVDYQIRRNDNGRSELFRSTLADFIHDLE-ESNHDQSWYLLEENLLDNPRVRPALEPPLRELQRLLGWDEFDLFPCAVRPQKSCLIVGGLGARSFLHGDPMEWIGWNVLLEGRKLWTFLPPSPELDAPLGTYRLAPNAFGAHNISAGWQSDLDLYRRGKHTARGRESVSWSPSAPEAQDLMGLATGGVQGPGDVVIIPPRHWHQVYHLEPSVAVASQYMDHNVRRGVFRHILDWCGAAEGAL-PAEFDKLTPAQQVQHVLKAAFVAQLGQKKGLEALATLEPP 996
            A L R+DV GLS  Q+ + VDFS PCILTG L    CE+WCD LL+ LG+    +QIR N++GRSE+F ++L DF+  L+ ES H++SWYLL+E+LLD P+ RP L   L + Q LLG DEF LFP +VRPQ  C IVGG+GARSFLH DPMEW+GWNVLLEGRKLWTFLPP  +LD+ LGTYRLAPNAFG+HN+SAGWQS++DLY+ G  TA      SW P+A E Q++M  A  GVQ  G++V+IPPRHWHQVYHLEPS+AVASQYMD  VR  VFRH+LDWCGA++  L  + FD L    Q++ VLK A VA+ G +KGLEA   L+ P
Sbjct:   82 ASLPRIDVTGLSRAQVADLVDFSRPCILTGVLSSPDCESWCDGLLQDLGEETCAFQIRDNESGRSEVFEASLMDFVKRLQDESTHNESWYLLDEHLLDFPQARPELGALLEKPQDLLGTDEFQLFPPSVRPQNLCTIVGGVGARSFLHSDPMEWMGWNVLLEGRKLWTFLPPLADLDSSLGTYRLAPNAFGSHNVSAGWQSNVDLYQHGAATA------SW-PTAGEGQEVMQHAVSGVQEAGELVLIPPRHWHQVYHLEPSLAVASQYMDFRVRDRVFRHMLDWCGASDDVLLSSRFDALALRDQIKEVLKVALVARHGGEKGLEAFDGLDDP 408          
BLAST of mRNA_H-elongata_contig48293.11974.1 vs. uniprot
Match: A0A7S2R9P6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9P6_9STRA)

HSP 1 Score: 205 bits (521), Expect = 7.740e-59
Identity = 136/379 (35.88%), Postives = 183/379 (48.28%), Query Frame = 1
Query:   19 DVKGLSPLQIREQVDFSTPCILTGAL--KLGTC------ETWCDTLLEGLGDSEVDYQIRRNDNGRSELFRSTLADFIHDLEESNHDQSWYLLEENLLDNPRVRPALEPPLRELQRLLGWDEFDLFPCAVRPQKSCLIVGGLGARSFLHGDPMEWIGWNVLLEGRKLWTFLPPSPELDAPLGTYRLAPNAF--GAHNISAGWQSDLDLYRRGKHTARGRESVSWSPSAPE-------AQDL-MGLATGG-------------------------------VQGPGDVVIIPPRHWHQVYHLEPSVAVASQYMDHNVRRGVFRHILDWCGAAEGALPAEFDKLTPAQ----QVQHVLKAAFVAQLGQKKGLEALATLEPP 996
            DV    P Q R +VD     ++  AL   +G        E W     E      V    + +  G +     +L+ F+    +SNH  S+YLL+E+LL +    P+L   L   +   G D F LFP  ++P++ CL++GG G+RS LH DPMEW GWN LLEG KLWTFLPP    +  LG+ R+    +  G +NISAGWQSD+DLY   K   +GR S  W PSA         A+D  +GL  G                                +Q  GD+V IPP  WHQ YHLEPSVAVA QY+     + V  H+  WC A+ G   + F ++   +     +Q +L  A  AQ GQ KG E  ++L  P
Sbjct:   78 DVVTGRPEQFRSEVDGRRVGVIKNALWGDMGAARSAEAMEAWTAAFFEAFAQERVTCHTKDSTTGETTALDLSLSHFVDLAFKSNHQHSYYLLDESLLSSA---PSLASSLTLPEAWFGKDHFGLFPAELQPKQPCLVMGGAGSRSSLHADPMEWTGWNYLLEGSKLWTFLPPGKGTETALGSRRVLSGEWDGGKYNISAGWQSDVDLYME-KIAGKGR-SGDW-PSAAALGVMPSIARDYALGLVEGSCNTGHPFMPSNAMVLDALVDGRSLEDGRIAVLQREGDLVHIPPGWWHQTYHLEPSVAVAGQYLSSQNFQKVAAHVCKWCDASIGDAGSHFQQVADTEGYETAIQELLLLALRAQHGQAKGDELFSSLTFP 450          
BLAST of mRNA_H-elongata_contig48293.11974.1 vs. uniprot
Match: A0A8J5Y022_DIALT (JmjC domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5Y022_DIALT)

HSP 1 Score: 196 bits (497), Expect = 1.530e-56
Identity = 126/305 (41.31%), Postives = 160/305 (52.46%), Query Frame = 1
Query:   73 PCILTGALKLGTC-ETWCDTLLEGLGDSEVDYQIRRNDNGRSELFRSTLADFIHDLEESNHDQSWYLLEENLLDNPRVRPALEPPLRELQRLLGWDEFDL-FPCAVRPQKSCLIVGGLGARSFLHGDPMEWIGWNVLLEGRKLWTFLPPSPELDAPLGTYRLAPNAFGAHN--ISAGWQSDLDLYRRGKHTARGRESVSWSPSA----------------PEAQ---DLMGLATGGVQGPGDVVIIPPRHWHQVYHLEPSVAVASQYMDHNVRRGVFRHILDWCGAAEGALPAEFD-KLTPAQQV 915
            P +LT AL  G+  ETW D L+E    + V+ Q+RR   GRS   R        +L  ++H   W LL +  L + R  P LE  L     L   D F+  FP  +RP ++C+IVGG GARS LH DP EW+G NV LEGRKLW FLPP PEL A L  YRL   A+G+    +SAGWQSD DLY   +  A G  ++  S  A                P+A+   D      G VQ  G++++IPP  WHQ Y+ EPS   A QY+D   R  VF+H+LDW     G    E D  L P +QV
Sbjct:    5 PLLLTHALADGSALETWADRLVEHAAAARVEVQVRR---GRSTELREVTLSGACELAYASHHSEWSLLFDERLVSARA-PQLERELALRPGLFEPDWFEAHFPPELRPSRTCVIVGGEGARSTLHADPFEWVGTNVCLEGRKLWRFLPPEPELSAQLRGYRLPSIAWGSQGGALSAGWQSDFDLYATRRAGAPGARALRDSARADEQLRAMADVRTGLLRPDARLPADAARRLVGCVQRAGELLLIPPGWWHQSYYPEPSFCAAGQYLDSFCRASVFQHVLDW--TRTGRRADEIDASLRPQEQV 303          
BLAST of mRNA_H-elongata_contig48293.11974.1 vs. uniprot
Match: W7TWL4_9STRA (F-box protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWL4_9STRA)

HSP 1 Score: 189 bits (480), Expect = 2.510e-53
Identity = 113/297 (38.05%), Postives = 163/297 (54.88%), Query Frame = 1
Query:   16 VDVKGLSPLQIREQVDFSTPCILTGAL------KLGTCETWCDTLLEGLGDSEVDYQIRRNDN-GRSELFRSTLADFIHDL-EESNHDQSWYLLEENLLDNPRVRPALEPPLRELQRLLG-WDEFDLFPCAVRPQKSCLIVGGLGARSFLHGDPMEWIGWNVLLEGRKLWTFLPPSPELDAPLGTYRLAPNAFGAHNISAGWQS-DLDLYRRGKHTARGRESVSWSPSAPEAQDLMGLATGGVQGPGDVVIIPPRHWHQVYHLEPSVAVASQYMDHNVRRGVFRHILDWCGAAEGAL 876
            +D + L   Q  +      PC+LT A       +    +T+ DT  E   D E++ Q++RN    +  L+  TLA  +  + ++S H+++WYLL E LL++ + R  ++ P R    L G  D FDLFP  +RP+K CLI+GG GARSFLH DP EW G N LLEGRK+WTF PP     A LG  R+ P A+    +SAGW+S D DLY +      G  ++       + + +  L    VQ  G++V+IPP   HQVYHL+P +++A Q  +H   + V  H+L W   + G L
Sbjct:   36 LDARDLPSQQALDAYIKKGPCVLTHAFDKDPNTRKMADDTFSDTFFEEFQDVELEVQLKRNSKIAKPRLYSGTLAGIVDGMMQKSTHEEAWYLLNEKLLEDSQNR-KIKDPFRLPPSLFGKLDYFDLFPQRIRPKKHCLILGGTGARSFLHVDPFEWTGVNYLLEGRKIWTFFPPC---SADLGLKRVLPEAWEGE-VSAGWKSTDFDLYYKVPEIFEGAVTLDLPEVLADVEGVQAL----VQEEGELVVIPPGWAHQVYHLKPGLSLAWQVCNHGNLKNVIMHMLTWAIESGGNL 323          
BLAST of mRNA_H-elongata_contig48293.11974.1 vs. uniprot
Match: A0A8J2SEA1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEA1_9STRA)

HSP 1 Score: 158 bits (400), Expect = 2.840e-42
Identity = 105/294 (35.71%), Postives = 139/294 (47.28%), Query Frame = 1
Query:   13 RVDVKGLSPLQIREQVDFSTPCILTGALKLGTCETWCDTLLEGLGDSEVDYQIRRNDNGRSELFRSTLADFIHDLEESNHDQSWYLLEENLLDNPRVRPALEPPLRELQRLLGWDEFDLFPCAVRPQKSCLIVGGLGARSFLHGDPMEWIGWNVLLEGRKLWTFLPPSPELDAPLGTYRLAPNAFGAHNISAGWQSDLDLY----------------RRGKHTARGRESVSWSPSAPEAQDLMGLATGGVQGPGDVVIIPPRHWHQVYHLEPSVAVASQYMDHNVRRGVFRHIL 846
            R+D K      IR  +D   P +  GAL    C+ W   L+EG GD+ V  QI        + F + LA+F +D   S H+   +L +E LL+      A+ P     +    W   D FP   RP  +C++  G GARS LH DP +W G ++ LEG K+W FL      DA L  Y+L   AFG  + SAG QSD+DLY                R       G E+ + S   P      G     +Q  GDVVI+PP+ WHQ Y LEPS AVASQ+        VF H++
Sbjct:   23 RIDAKDAPA--IRAALDSGQPFVAAGALSPEACDAWTGNLMEGFGDAIVTQQIA------GDPFDAPLAEFFYDALASTHETPHFLFDEALLEGNLRAAAIAPQRAIFEGEESW--LDAFPAERRPADACVVCAGAGARSPLHRDPYDWTGTSLCLEGSKVWRFLLDVD--DADLEAYKLPSEAFG--DDSAGTQSDIDLYCVQEGDWPDAADFEDDRDLVKAKAGPENFTPSTQVP------GRFCTALQFAGDVVIVPPKSWHQTYALEPSCAVASQFCGRRDAPTVFEHMI 296          
BLAST of mRNA_H-elongata_contig48293.11974.1 vs. uniprot
Match: F0YQV8_AURAN (Expressed protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQV8_AURAN)

HSP 1 Score: 145 bits (367), Expect = 8.570e-38
Identity = 105/278 (37.77%), Postives = 135/278 (48.56%), Query Frame = 1
Query:   13 RVDVKGLSPLQIREQVDFSTPCILTGALKLGTCETWCDTLLEGLGDSEVDYQIRRNDNGRSELFRSTLADFIHDLEESNHDQSWYLLEENLLD-NPRVRPALEPPLRELQRLLGWDE--FDLFPCAVRPQKSCLIVGGLGARSFLHGDPMEWIGWNVLLEGRKLWTFLPPSPELDAPLGTYRLAPNAFGAHNISAGWQSDLDLYRRG---------KHTARGRESVSWSPSAPEAQDLMGLATG----GVQGPGDVVIIPPRHWHQVYHLEPSVAVAS 798
            RVD +  +   I   +D   P I   AL    CE W D L+  LGD+ V  Q R       E     L  F  D   S+H    +L +E LLD +  +R A   P R +    G +   FD FP + RP+  C++  G GARS LH DP +W G ++ +EG K+W F       DA LG Y LA  AFG    SAG QSD DLY R           +      + +WS +A  A D+    T      +Q  GDVV++PPR WHQ Y LEPS+AVAS
Sbjct:   33 RVDARDHAA--IAAALDAGEPFIAAEALSARDCEAWTDALMMRLGDAPVRRQRR------GEALEMPLGAFFEDALTSSHALPSFLFDEFLLDGDDDLRGAAVGPQRAI---FGGERSWFDHFPESRRPRDGCVVGAGAGARSPLHRDPYDWTGTSLCVEGSKVWRFA--LDVADADLGAYELASEAFGGD--SAGTQSDADLYARRVGDGWPEPYAYDDDPALAATWSAAARFAPDVALPKTARFVTALQRAGDVVVVPPRAWHQTYALEPSLAVAS 295          
BLAST of mRNA_H-elongata_contig48293.11974.1 vs. uniprot
Match: A0A812KFH2_9DINO (PSR protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812KFH2_9DINO)

HSP 1 Score: 145 bits (365), Expect = 2.780e-37
Identity = 99/301 (32.89%), Postives = 139/301 (46.18%), Query Frame = 1
Query:   79 ILTGALKLGTCETWCDTLLEGLGDSEVDYQIRRND--NGRSELFRSTLADFIHDLEESNHDQSWYLLEENLLDNPRVRPALEPPLRELQRLLGWDEFDLFPCAVRPQKSCLIVGGLGARSFLHGDPMEWIGWNVLLEGRKLWTFLPPSPELDAPLGTYRLAPNAFGAHN-------ISAGWQSDLDLYRRGKHTARGRESVSW---SPSAPEAQDLMGLATG--GVQGPGDVVIIPPRHWHQVYHLEPSVAVASQYMDHNVRRGVFRHILDWCGAAEGALPAEFDKLTPAQQVQHVLKAAF 939
            +L  + +  +    C TLLE  G  EV+Y+   +   N  ++L    L DF+ +   S H+    L++EN++    +  +L   L      L  D F  FP  +RP   CL+VGG GARS LH DP+ W GWN LL+GRKLW F P  P+       +R     FG          I +GW+SD+DL+    H A      S+   SP   +   + G +     VQ PG+ +I P   WHQ YHL P+   A Q ++      V  HI+ WC   E  +P E     P   +  VL  A 
Sbjct:   25 VLPNSFQEASSNFCCKTLLEEAGCQEVEYKRATHGELNLATDLLSKVLCDFVPN---SYHEDPVLLMDENVVSTTSLANSL---LEAAPPFLREDLFCEFPRMLRPAPLCLVVGGRGARSDLHIDPLSWTGWNCLLQGRKLWRFFPDIPQ---NAEAFRPMSRPFGIRKGGAEVCTIGSGWRSDVDLFANRTHPAAEPLCDSFGSLSPDLGQFPHVKGCSAPLEHVQEPGETLIFPGHWWHQTYHLTPTFGFAGQVLNSGNLGRVLGHIIRWC---ELEVPDEAWDQEPKALIAQVLGEAI 313          
BLAST of mRNA_H-elongata_contig48293.11974.1 vs. uniprot
Match: A0A812XB14_9DINO (PSR protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812XB14_9DINO)

HSP 1 Score: 147 bits (372), Expect = 2.660e-36
Identity = 101/300 (33.67%), Postives = 142/300 (47.33%), Query Frame = 1
Query:   79 ILTGALKLGTCETWCDTLLEGLGDSEVDYQIRRNDNGRSELFRSTLADFIHD-LEESNHDQSWYLLEENLLDNPRVRPALEPPLRELQRLLGWDEFDLFPCAVRPQKSCLIVGGLGARSFLHGDPMEWIGWNVLLEGRKLWTFLPPSPELDAPLGTYRLAPNAFGAHN-------ISAGWQSDLDLYRRGKHTARGR--ESVSW-SPSAPEAQDLMGLATG--GVQGPGDVVIIPPRHWHQVYHLEPSVAVASQYMDHNVRRGVFRHILDWCGAAEGALPAEFDKLTPAQQVQHVLKAAF 939
            +L  + +  +    C TLLE  G  EV+Y  +R   G   L   +L+  + D +  S H+    L++EN++    +  +L   L      L  D F  FP  +RP + CL+VGG GARS LH DP+ W GWN LL+GRKLW F P  P+       +R A   FG          I +GW+SD+DL+    +TA     +S  W SP   +   + G +     VQ PG+ +I P   WHQ YHL P+   A Q ++      V  HI+ WC   E  +P E     P   +  VL  A 
Sbjct:   25 VLPNSFQEASSNFCCKTLLEEAGCQEVEY--KRAAQGELSLATDSLSRVLCDFVPNSCHEDPVLLMDENVVSTTSLANSL---LEAAPPFLREDLFCEFPLMLRPAQLCLVVGGQGARSDLHIDPLSWTGWNCLLQGRKLWRFFPDIPQ---HAEAFRPASRPFGIRKGGAEVCTIGSGWRSDVDLFANRTNTAAEPPCDSFGWLSPDLAKFPHVKGCSAPLEHVQEPGETLIFPGHWWHQTYHLTPTFGFAGQVLNSGNLGRVLGHIIRWC---ELEVPDEAWDQEPKAFIAQVLGEAI 313          
BLAST of mRNA_H-elongata_contig48293.11974.1 vs. uniprot
Match: A0A835YWS3_9STRA (JmjC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWS3_9STRA)

HSP 1 Score: 137 bits (345), Expect = 6.250e-36
Identity = 78/168 (46.43%), Postives = 99/168 (58.93%), Query Frame = 1
Query:  478 LEGRKLWTFLPPSPELDAPLGTYRLAPNAFG-AHNISAGWQSDLDLYRRGKHT-ARGRESVSWSPSAPEA--QDLMGLATGGVQGPGDVVIIPPRHWHQVYHLEPSVAVASQ-YMDHNVRRGVFRHILDWCGAAEGALPAEFDKLTPAQQVQHVLKAAFVAQLGQKKG 966
            +EG KLWTFLPP PE    L  YRL PNA+G ++N+SAGWQS +DLYR    + A G + +  S +A     +D+       VQ  G+ V+IPPR WHQV HL PS+AVASQ Y     RR +F+HI DWCG    A P E     P +QV+ VL+    A+ G   G
Sbjct:    1 MEGEKLWTFLPPCPE--HLLDGYRLPPNAWGGSYNVSAGWQSPVDLYRPFSESGAHGSDGIMLSAAAAYGVPEDVWARRKQVVQREGETVLIPPRWWHQVIHLAPSIAVASQHYAGARGRRRIFQHIRDWCGCGGSAAPPEIRSWPPQKQVEWVLQEGLCAKHGTDVG 166          
BLAST of mRNA_H-elongata_contig48293.11974.1 vs. uniprot
Match: A0A1Q9EEB4_SYMMI (Bifunctional arginine demethylase and lysyl-hydroxylase PSR n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9EEB4_SYMMI)

HSP 1 Score: 147 bits (372), Expect = 6.990e-36
Identity = 101/300 (33.67%), Postives = 142/300 (47.33%), Query Frame = 1
Query:   79 ILTGALKLGTCETWCDTLLEGLGDSEVDYQIRRNDNGRSELFRSTLADFIHD-LEESNHDQSWYLLEENLLDNPRVRPALEPPLRELQRLLGWDEFDLFPCAVRPQKSCLIVGGLGARSFLHGDPMEWIGWNVLLEGRKLWTFLPPSPELDAPLGTYRLAPNAFGAHN-------ISAGWQSDLDLYRRGKHTARGR--ESVSW-SPSAPEAQDLMGLATG--GVQGPGDVVIIPPRHWHQVYHLEPSVAVASQYMDHNVRRGVFRHILDWCGAAEGALPAEFDKLTPAQQVQHVLKAAF 939
            +L  + +  +    C TLLE  G  EV+Y  +R   G   L   +L+  + D +  S H+    L++EN++    +  +L   L      L  D F  FP  +RP + CL+VGG GARS LH DP+ W GWN LL+GRKLW F P  P+       +R A   FG          I +GW+SD+DL+    +TA     +S  W SP   +   + G +     VQ PG+ +I P   WHQ YHL P+   A Q ++      V  HI+ WC   E  +P E     P   +  VL  A 
Sbjct:   25 VLPNSFQEASSNFCCKTLLEEAGCQEVEY--KRAAQGELSLATDSLSRVLCDFVPNSCHEDPVLLMDENVVSTTSLANSL---LEAAPPFLREDLFCEFPLMLRPAQLCLVVGGQGARSDLHIDPLSWTGWNCLLQGRKLWRFFPDIPQ---HAEAFRPASRPFGIRKGGAEVCTIGSGWRSDVDLFANRTNTAAEPPCDSFGWLSPDLAKFPHVKGCSAPLEHVQEPGETLIFPGHWWHQTYHLTPTFGFAGQVLNSGNLGRVLGHIIRWC---ELEVPDEAWDQEPKAFIAQVLGEAI 313          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48293.11974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D8LQI0_ECTSI1.990e-13960.48JmjC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S2R9P6_9STRA7.740e-5935.88Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J5Y022_DIALT1.530e-5641.31JmjC domain-containing protein n=2 Tax=Diacronema ... [more]
W7TWL4_9STRA2.510e-5338.05F-box protein n=1 Tax=Nannochloropsis gaditana Tax... [more]
A0A8J2SEA1_9STRA2.840e-4235.71Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YQV8_AURAN8.570e-3837.77Expressed protein (Fragment) n=1 Tax=Aureococcus a... [more]
A0A812KFH2_9DINO2.780e-3732.89PSR protein n=2 Tax=Symbiodinium TaxID=2949 RepID=... [more]
A0A812XB14_9DINO2.660e-3633.67PSR protein n=2 Tax=Symbiodinium TaxID=2949 RepID=... [more]
A0A835YWS3_9STRA6.250e-3646.43JmjC domain-containing protein n=1 Tax=Tribonema m... [more]
A0A1Q9EEB4_SYMMI6.990e-3633.67Bifunctional arginine demethylase and lysyl-hydrox... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48293contigH-elongata_contig48293:334..3432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score414.5
Seed ortholog evalue4.8e-113
Seed eggNOG ortholog2880.D8LQI0
EggNOG OGs2CZ69@1,2S8PH@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionJumonji domain protein
Ec32 orthologEc-10_005720.1
Exons4
Model size999
Cds size999
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48293.11974.1prot_H-elongata_contig48293.11974.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48293 334..3432 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930795.5997205-CDS-H-elongata_contig48293:333..5961622930795.5997205-CDS-H-elongata_contig48293:333..596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48293 334..596 +
1691679573.7886357-CDS-H-elongata_contig48293:333..5961691679573.7886357-CDS-H-elongata_contig48293:333..596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48293 334..596 +
1622930795.639815-CDS-H-elongata_contig48293:1182..13621622930795.639815-CDS-H-elongata_contig48293:1182..1362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48293 1183..1362 +
1691679573.8024478-CDS-H-elongata_contig48293:1182..13621691679573.8024478-CDS-H-elongata_contig48293:1182..1362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48293 1183..1362 +
1622930795.6608891-CDS-H-elongata_contig48293:1821..21401622930795.6608891-CDS-H-elongata_contig48293:1821..2140Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48293 1822..2140 +
1691679573.8122694-CDS-H-elongata_contig48293:1821..21401691679573.8122694-CDS-H-elongata_contig48293:1821..2140Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48293 1822..2140 +
1622930795.683272-CDS-H-elongata_contig48293:3195..34321622930795.683272-CDS-H-elongata_contig48293:3195..3432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48293 3196..3432 +
1691679573.822692-CDS-H-elongata_contig48293:3195..34321691679573.822692-CDS-H-elongata_contig48293:3195..3432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48293 3196..3432 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48293.11974.1

>prot_H-elongata_contig48293.11974.1 ID=prot_H-elongata_contig48293.11974.1|Name=mRNA_H-elongata_contig48293.11974.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=333bp
ACLKRVDVKGLSPLQIREQVDFSTPCILTGALKLGTCETWCDTLLEGLGD
SEVDYQIRRNDNGRSELFRSTLADFIHDLEESNHDQSWYLLEENLLDNPR
VRPALEPPLRELQRLLGWDEFDLFPCAVRPQKSCLIVGGLGARSFLHGDP
MEWIGWNVLLEGRKLWTFLPPSPELDAPLGTYRLAPNAFGAHNISAGWQS
DLDLYRRGKHTARGRESVSWSPSAPEAQDLMGLATGGVQGPGDVVIIPPR
HWHQVYHLEPSVAVASQYMDHNVRRGVFRHILDWCGAAEGALPAEFDKLT
PAQQVQHVLKAAFVAQLGQKKGLEALATLEPP*
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mRNA from alignment at H-elongata_contig48293:334..3432+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48293.11974.1 ID=mRNA_H-elongata_contig48293.11974.1|Name=mRNA_H-elongata_contig48293.11974.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3099bp|location=Sequence derived from alignment at H-elongata_contig48293:334..3432+ (Himanthalia elongata Himel1 dioecious)
GCGTGTTTGAAGCGGGTCGATGTAAAGGGGCTCTCGCCGTTACAAATAAG GGAGCAAGTTGACTTCTCAACACCGTGTATTCTGACGGGAGCCCTAAAAC TGGGAACATGCGAGACTTGGTGCGACACATTGCTGGAGGGATTGGGGGAT TCGGAGGTCGATTACCAGATTCGACGCAACGACAATGGTCGCAGCGAGCT TTTCCGCTCAACTCTTGCCGACTTCATCCACGACCTGGAAGAAAGCAATC ACGATCAAAGCTGGTGAGGTAGCGGCCTCGAGGCCACACGAACCGGACAT TATTGTCTCGTTAAGACGTTGTCGACGTGGCGACGATTTCAAGGATGTGA TCAGGTGCCAGTCGTTCTTGGCATCTAGGATTACCTCCTTCGACCGCTGG AGCTCAGCGCATCGTCGTTTCTAGTGATCTGCTCACTTGTGTTTTGAAAG TTCAATTCAAGTTCCGTTACTTTCTTGTATGATAGATGCACTGGTACGAG TGATCTTAGAGTTCACGCTACACACCATCTTGATGGAAGTCGTTGGGATA TATTGCGCTGGATTTTTATATCTAGTAGGAAAGAGCAATACCGCGGCGTA CTATCCTCCAGAAGGCAGCCCTGGGTCAGCATAATCGTATAACCGGGGAC GAGCCCTGTGTGGGACTCTATACGTTCGTGCCATATCCGTACATGAATAT ATCAATGAGTAGTGCTGTCCATCTCGGCAAACACTTGTGTGGTGACTCGT GCGCCTTGAGGGCACCGGATAAACGTAGCATCGCCAAACAAAAAAGGCAC AGCGGAGTCAACCAAGGCATCCAAACGCCACTGTAACGGACCACTGCAGG TACTTGCTTGAGGAGAACCTTTTAGACAACCCTCGAGTCAGACCAGCTCT CGAACCGCCGCTTCGAGAGCTGCAACGACTTCTCGGGTGGGACGAATTCG ACCTCTTTCCTTGTGCAGTAAGGCCGCAGAAGTCGTGCCTCATCGTCGGT GGACTGGGGGCGCGGTCGTTCCTCCACGGGTGAGGGGGGAATAAGAGCGC GGGACATTATCCACTCAGCACGAGTGCATGGCTCATCTTGTTGCAGTGAC CTACGGCTATAGACTATTTCAGGAGAACTCTTGCGATGAAATTGTACGCG TGTACTTCTAGTGCAACTATGGGCACATAGTGTGAGCTTCATCTGGTGCG CTTGCGTTTGTAGATATATATATATATATATATGCCGCACAAGATAGAAG GGGTTGAGGGGTGTTGAAAAGTCCGTATCAAATTCCTTCAGTGGTGGTAG GCTATCGCGACAAAGCGGGAGGGACAGAATGAAGGCGGGGTGTTTTGTCT TTTAAGTTTCGGTGAAACGTTTCAGAACCGTTTTCGAGCCTCCGTGTCGC GGGCATTCATGAGAAAAATCATCGCTGCTGGACCGCCACTTGAACACCTA TTAATAGGCCCGTTATCCTCTCGTACGCACCCCGACAGTGATCCAATGGA GTGGATCGGGTGGAACGTATTGCTCGAAGGGCGGAAGCTTTGGACGTTCC TTCCCCCCTCCCCCGAATTGGACGCGCCACTCGGGACGTATCGCCTAGCT CCGAACGCGTTCGGAGCCCATAACATCTCGGCTGGTTGGCAGAGCGACTT GGATCTGTATCGGCGAGGGAAACATACGGCGAGAGGCAGGGAAAGTGTGT CTTGGTCGCCGTCGGCACCCGAGGCGCAGGATCTCATGGGACTGGCGACC GGTGGTGTTCAGGGGCCGGGAGATGTCGTCATCATCCCTCCGCGACACTG GCACCAGGTAGGGGCAAGTTGTGCTTTCCGACCCGGCCCGAGATGAAATC AATCACGGTCACGACTTGGAATGACCGCCGTGATCAATTGCGGGGTTGCC TTGAAAGCTATGAAAGTGCTCTAGCGTTCCGATAATCCATGCCCCATGGT TCTTGCCTGACGTTGGGTTGGAGTTGATAGAGATAGCACGCGACCCGCCT AAAGACGCCTACGCGCAAATAATATCACGATAAGGGACTGAGTATAATTC AAGGTGGCGTTCATTGGGGAATGTTTCGGGGTACTACAACCACTCCCCAA GAAGTACCACCGAGACAGCCTGGGAGATATATGTAGCCCCAGGGATGAGG CGAGGAAGAAGATGAGTCAGGAGCTGGTAGTGGATGGTAATTGTTGATAT ACTCCCTCCAAATCCTTAAATCTACGCATACATCTTATTGGATAAGAGGA ATGAAGAATATATGGATGTGAAGTAGAACGCCCTTTTTTTCCGCTTGTGT AATTTTTTTGTCGTAAATCACCTTCTTCGCGCGTCTTTTCTTTGTTACTC TTCATTTTTGTTGTGTAAATGATTGAACATAGTATACTTTTTTATTTCAT CTTTGCTCCGCTGATTACTGATTACTGACCAAGAGCGGGACTGTTAATAT ACCAGGACCATACGTGAAATGGGCATTTTCAGATGAATCGAAGTACTTGA ACTGTTAGCAGAAAGCCTCCACACAATACTATGAAGCTAGGGTTCCTTGT CCTCTTCGATACCGAAAATAAAATAAAGGGGGTGCTACAGCGAGATTGAC CCAATGCATCTCCCATTACCAATATCTGACGCTTTGTGATGAGAAGGGAG GTTGTGTTCGTCCGTGAAGTCGCTGGTGCTATAGCAATCGTGTTGTGAGG GCGCGTAATGCCAGGAAACTCGATCAAATACCTCCATCAGTCGATGTGTT GACAGTCACCCAGAGCCATAGGGATTTATAGTGGAAACTTGGGCCATTAC AGTTGGGCCATAAATCAATGTGAACAGGTGTGCCGGCTGTATCCCATGTG GTTAACTCTCAGGTTTATCATCTGGAGCCTTCCGTCGCGGTAGCGTCACA GTATATGGATCACAACGTTAGACGAGGCGTTTTTCGTCACATCCTGGATT GGTGCGGTGCCGCCGAGGGGGCTTTGCCCGCCGAATTCGACAAGCTTACA CCGGCGCAGCAAGTGCAACATGTGCTGAAGGCTGCATTTGTAGCACAGCT GGGACAGAAAAAGGGACTTGAGGCATTGGCCACCCTTGAGCCGCCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig48293:334..3432+

>mRNA_H-elongata_contig48293.11974.1 ID=mRNA_H-elongata_contig48293.11974.1|Name=mRNA_H-elongata_contig48293.11974.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1998bp|location=Sequence derived from alignment at H-elongata_contig48293:334..3432+ (Himanthalia elongata Himel1 dioecious)
GCGTGTTTGAAGCGGGTCGATGTAAAGGGGCTCTCGCCGTTACAAATAAG
GGAGCAAGTTGACTTCTCAACACCGTGTATTCTGACGGGAGCCCTAAAAC
TGGGAACATGCGAGACTTGGTGCGACACATTGCTGGAGGGATTGGGGGAT
TCGGAGGTCGATTACCAGATTCGACGCAACGACAATGGTCGCAGCGAGCT
TTTCCGCTCAACTCTTGCCGACTTCATCCACGACCTGGAAGAAAGCAATC
ACGATCAAAGCTGGCGTGTTTGAAGCGGGTCGATGTAAAGGGGCTCTCGC
CGTTACAAATAAGGGAGCAAGTTGACTTCTCAACACCGTGTATTCTGACG
GGAGCCCTAAAACTGGGAACATGCGAGACTTGGTGCGACACATTGCTGGA
GGGATTGGGGGATTCGGAGGTCGATTACCAGATTCGACGCAACGACAATG
GTCGCAGCGAGCTTTTCCGCTCAACTCTTGCCGACTTCATCCACGACCTG
GAAGAAAGCAATCACGATCAAAGCTGGTACTTGCTTGAGGAGAACCTTTT
AGACAACCCTCGAGTCAGACCAGCTCTCGAACCGCCGCTTCGAGAGCTGC
AACGACTTCTCGGGTGGGACGAATTCGACCTCTTTCCTTGTGCAGTAAGG
CCGCAGAAGTCGTGCCTCATCGTCGGTGGACTGGGGGCGCGGTCGTTCCT
CCACGGGTACTTGCTTGAGGAGAACCTTTTAGACAACCCTCGAGTCAGAC
CAGCTCTCGAACCGCCGCTTCGAGAGCTGCAACGACTTCTCGGGTGGGAC
GAATTCGACCTCTTTCCTTGTGCAGTAAGGCCGCAGAAGTCGTGCCTCAT
CGTCGGTGGACTGGGGGCGCGGTCGTTCCTCCACGGTGATCCAATGGAGT
GGATCGGGTGGAACGTATTGCTCGAAGGGCGGAAGCTTTGGACGTTCCTT
CCCCCCTCCCCCGAATTGGACGCGCCACTCGGGACGTATCGCCTAGCTCC
GAACGCGTTCGGAGCCCATAACATCTCGGCTGGTTGGCAGAGCGACTTGG
ATCTGTATCGGCGAGGGAAACATACGGCGAGAGGCAGGGAAAGTGTGTCT
TGGTCGCCGTCGGCACCCGAGGCGCAGGATCTCATGGGACTGGCGACCGG
TGGTGTTCAGGGGCCGGGAGATGTCGTCATCATCCCTCCGCGACACTGGC
ACCAGTGATCCAATGGAGTGGATCGGGTGGAACGTATTGCTCGAAGGGCG
GAAGCTTTGGACGTTCCTTCCCCCCTCCCCCGAATTGGACGCGCCACTCG
GGACGTATCGCCTAGCTCCGAACGCGTTCGGAGCCCATAACATCTCGGCT
GGTTGGCAGAGCGACTTGGATCTGTATCGGCGAGGGAAACATACGGCGAG
AGGCAGGGAAAGTGTGTCTTGGTCGCCGTCGGCACCCGAGGCGCAGGATC
TCATGGGACTGGCGACCGGTGGTGTTCAGGGGCCGGGAGATGTCGTCATC
ATCCCTCCGCGACACTGGCACCAGGTTTATCATCTGGAGCCTTCCGTCGC
GGTAGCGTCACAGTATATGGATCACAACGTTAGACGAGGCGTTTTTCGTC
ACATCCTGGATTGGTGCGGTGCCGCCGAGGGGGCTTTGCCCGCCGAATTC
GACAAGCTTACACCGGCGCAGCAAGTGCAACATGTGCTGAAGGCTGCATT
TGTAGCACAGCTGGGACAGAAAAAGGGACTTGAGGCATTGGCCACCCTTG
AGCCGCCATGAGTTTATCATCTGGAGCCTTCCGTCGCGGTAGCGTCACAG
TATATGGATCACAACGTTAGACGAGGCGTTTTTCGTCACATCCTGGATTG
GTGCGGTGCCGCCGAGGGGGCTTTGCCCGCCGAATTCGACAAGCTTACAC
CGGCGCAGCAAGTGCAACATGTGCTGAAGGCTGCATTTGTAGCACAGCTG
GGACAGAAAAAGGGACTTGAGGCATTGGCCACCCTTGAGCCGCCATGA
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