mRNA_H-elongata_contig48168.11964.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48168.11964.1
Unique NamemRNA_H-elongata_contig48168.11964.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig48168.11964.1 vs. uniprot
Match: A0A6H5JEV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEV9_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 2.820e-24
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    7 GGYDRGHGDGGRPPKKARDAKYAIPTMEEACLLRETEGKLFESNVLRLEVEELLGEVRVDYSKRTVKALE 216
            G  D G GDG  P K+ARDAKYAIPTMEEA LLRETEGKLFE N+LRLEVEELLGEVR+D+ K++VKALE
Sbjct:   66 GNADGGEGDGAPPQKRARDAKYAIPTMEEASLLRETEGKLFEGNLLRLEVEELLGEVRLDHGKKSVKALE 135
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BLAST of mRNA_H-elongata_contig48168.11964.1 vs. uniprot
Match: D7FGX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX0_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 3.850e-24
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    7 GGYDRGHGDGGRPPKKARDAKYAIPTMEEACLLRETEGKLFESNVLRLEVEELLGEVRVDYSKRTVKALE 216
            G  D G GDG  P K+ARDAKYAIPTMEEA LLRETEGKLFE N+LRLEVEELLGEVR+D+ K++VKALE
Sbjct:   61 GDADGGEGDGAPPQKRARDAKYAIPTMEEASLLRETEGKLFEGNLLRLEVEELLGEVRLDHGKKSVKALE 130
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BLAST of mRNA_H-elongata_contig48168.11964.1 vs. uniprot
Match: A0A316UJF3_9BASI (U3 small nucleolar RNA-associated protein 22 n=1 Tax=Pseudomicrostroma glucosiphilum TaxID=1684307 RepID=A0A316UJF3_9BASI)

HSP 1 Score: 52.4 bits (124), Expect = 7.230e-6
Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:   40 RPPKKARDAKYAIPTMEEACLLRETEGKLFESNVLRLEVEELLGEVRVDYSKRTVKALEVRRRRYCSCYRRFSP 261
            R   K+++A YA PT EE   LRET G+LF+SNV++L++EE+LG VR  Y K     LE+  RR  S ++   P
Sbjct:   54 RKGAKSKEALYAPPTNEEMQGLRET-GELFKSNVIKLQIEEMLGTVRPSYHK--AGPLELVLRRLHSLFQSLQP 124
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BLAST of mRNA_H-elongata_contig48168.11964.1 vs. uniprot
Match: A0A4P9W203_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9W203_9FUNG)

HSP 1 Score: 49.7 bits (117), Expect = 6.200e-5
Identity = 24/49 (48.98%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   49 KKARDAKYAIPTMEEACLLRETEGKLFESNVLRLEVEELLGEVRVDYSK 195
            KK  +A Y  PT +E  +L+ET   LF+SN+ +++++ELLGEVR+DY+K
Sbjct:  490 KKDGNALYRAPTSDEIHMLKETTD-LFKSNLFKMQIDELLGEVRIDYTK 537
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48168.11964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JEV9_9PHAE2.820e-2477.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGX0_ECTSI3.850e-2477.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A316UJF3_9BASI7.230e-645.95U3 small nucleolar RNA-associated protein 22 n=1 T... [more]
A0A4P9W203_9FUNG6.200e-548.98Uncharacterized protein (Fragment) n=1 Tax=Blyttio... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48168contigH-elongata_contig48168:3141..3401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue3.3e-21
Seed eggNOG ortholog2880.D7FGX0
Preferred nameNOL6
KEGG koko:K08018,ko:K14544
KEGG Pathwayko03008,ko04010,ko04015,ko04530,map03008,map04010,map04015,map04530
GOsGO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000462,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006409,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030628,GO:0030684,GO:0030686,GO:0031503,GO:0031974,GO:0031981,GO:0032040,GO:0032545,GO:0032991,GO:0033036,GO:0034456,GO:0034470,GO:0034613,GO:0034641,GO:0034660,GO:0036002,GO:0042254,GO:0042274,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051031,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071431,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0089701,GO:0090304,GO:0097064,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.tRNA export from nucleus
EggNOG OGsKOG2054@1,KOG2054@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Exons1
Model size261
Cds size261
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930794.7081616-CDS-H-elongata_contig48168:3140..34011622930794.7081616-CDS-H-elongata_contig48168:3140..3401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48168 3141..3401 +
1691679573.381963-CDS-H-elongata_contig48168:3140..34011691679573.381963-CDS-H-elongata_contig48168:3140..3401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48168 3141..3401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48168.11964.1prot_H-elongata_contig48168.11964.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48168 3141..3401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48168.11964.1

>prot_H-elongata_contig48168.11964.1 ID=prot_H-elongata_contig48168.11964.1|Name=mRNA_H-elongata_contig48168.11964.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MEGGYDRGHGDGGRPPKKARDAKYAIPTMEEACLLRETEGKLFESNVLRL
EVEELLGEVRVDYSKRTVKALEVRRRRYCSCYRRFSP
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mRNA from alignment at H-elongata_contig48168:3141..3401+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48168.11964.1 ID=mRNA_H-elongata_contig48168.11964.1|Name=mRNA_H-elongata_contig48168.11964.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig48168:3141..3401+ (Himanthalia elongata Himel1 dioecious)
ATGGAAGGCGGTTATGATAGGGGGCACGGAGACGGGGGCCGACCTCCAAA
GAAGGCGCGGGACGCGAAGTACGCGATCCCCACCATGGAGGAGGCGTGTC
TGTTGCGGGAGACCGAGGGTAAGCTGTTCGAGAGCAACGTTTTGCGCCTG
GAGGTCGAGGAGCTGTTGGGAGAGGTCAGGGTGGATTACAGCAAGAGGAC
CGTCAAGGCTTTGGAGGTGAGGCGAAGGCGTTACTGTAGTTGCTACAGGC
GGTTTTCACCA
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Coding sequence (CDS) from alignment at H-elongata_contig48168:3141..3401+

>mRNA_H-elongata_contig48168.11964.1 ID=mRNA_H-elongata_contig48168.11964.1|Name=mRNA_H-elongata_contig48168.11964.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig48168:3141..3401+ (Himanthalia elongata Himel1 dioecious)
ATGGAAGGCGGTTATGATAGGGGGCACGGAGACGGGGGCCGACCTCCAAA
GAAGGCGCGGGACGCGAAGTACGCGATCCCCACCATGGAGGAGGCGTGTC
TGTTGCGGGAGACCGAGGGTAAGCTGTTCGAGAGCAACGTTTTGCGCCTG
GAGGTCGAGGAGCTGTTGGGAGAGGTCAGGGTGGATTACAGCAAGAGGAC
CGTCAAGGCTTTGGAGGTGAGGCGAAGGCGTTACTGTAGTTGCTACAGGC
GGTTTTCACCAATGGAAGGCGGTTATGATAGGGGGCACGGAGACGGGGGC
CGACCTCCAAAGAAGGCGCGGGACGCGAAGTACGCGATCCCCACCATGGA
GGAGGCGTGTCTGTTGCGGGAGACCGAGGGTAAGCTGTTCGAGAGCAACG
TTTTGCGCCTGGAGGTCGAGGAGCTGTTGGGAGAGGTCAGGGTGGATTAC
AGCAAGAGGACCGTCAAGGCTTTGGAGGTGAGGCGAAGGCGTTACTGTAG
TTGCTACAGGCGGTTTTCACCA
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