mRNA_H-elongata_contig48159.11958.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig48159.11958.1 vs. uniprot
Match: A0A6H5JUK6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK6_9PHAE) HSP 1 Score: 157 bits (397), Expect = 9.230e-43 Identity = 65/81 (80.25%), Postives = 73/81 (90.12%), Query Frame = 3
Query: 57 PHHEKLFVSGGYDGKLMYWIVGSEKPYAEIEYAHEAMAVWDLGWHPMGHVLASGSNDHTVKFWVRNRVGDPMACHPEVLKE 299
P HE+L SGGYDGK+MYW++GSEKP+AEIEYAH+ AVWDLGWHP+GHVLASGSNDHTVKFWVRNRVGD M C PEV+KE
Sbjct: 148 PQHERLLASGGYDGKMMYWVIGSEKPHAEIEYAHDGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRVGDTMGCKPEVVKE 228
BLAST of mRNA_H-elongata_contig48159.11958.1 vs. uniprot
Match: D8LKW8_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW8_ECTSI) HSP 1 Score: 152 bits (384), Expect = 6.490e-41 Identity = 63/81 (77.78%), Postives = 72/81 (88.89%), Query Frame = 3
Query: 57 PHHEKLFVSGGYDGKLMYWIVGSEKPYAEIEYAHEAMAVWDLGWHPMGHVLASGSNDHTVKFWVRNRVGDPMACHPEVLKE 299
P HE+L SGGYDGK+MYW+VGSEKP+AEIEYAH+ AVWDLGWHP+GHVLASGSNDHTVKFWVRNRVGD M C PE+ ++
Sbjct: 302 PQHERLLASGGYDGKMMYWVVGSEKPHAEIEYAHDGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRVGDTMGCKPELNED 382
BLAST of mRNA_H-elongata_contig48159.11958.1 vs. uniprot
Match: A0A662XI34_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XI34_9STRA) HSP 1 Score: 134 bits (337), Expect = 1.250e-35 Identity = 57/87 (65.52%), Postives = 69/87 (79.31%), Query Frame = 3
Query: 12 TLQGHGQDVTSLAWHPHHEKLFVSGGYDGKLMYWIVGSEKPYAEIEYAHEAMAVWDLGWHPMGHVLASGSNDHTVKFWVRNRVGDPM 272
TL+GH ++VTS+AWHP +E+LFVSG YDG LMYW VG E A I AH+ AVWD+ WHP+GHV+A+GSNDH+ KFW RNR GDPM
Sbjct: 39 TLKGHAREVTSIAWHPWYERLFVSGSYDGSLMYWEVGKENALASIPQAHDT-AVWDIQWHPVGHVVATGSNDHSTKFWCRNRPGDPM 124
BLAST of mRNA_H-elongata_contig48159.11958.1 vs. uniprot
Match: A0A1Y3ATQ8_EURMA (Uncharacterized protein (Fragment) n=1 Tax=Euroglyphus maynei TaxID=6958 RepID=A0A1Y3ATQ8_EURMA) HSP 1 Score: 122 bits (306), Expect = 1.260e-33 Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 3
Query: 12 TLQGHGQDVTSLAWHPHHEKLFVSGGYDGKLMYWIVGSEKPYAEIEYAHEAMAVWDLGWHPMGHVLASGSNDHTVKFWVRNRVGDPM 272
T +GH ++ + LAWHP HE LF SGG DG +++W+VG++K +E AHE++ VW L WHP+GH+L SGSNDHT KFW RNR GD M
Sbjct: 7 TFRGHKKEASCLAWHPIHEGLFASGGSDGSILFWLVGTDKEIGGMENAHESI-VWSLSWHPLGHILTSGSNDHTCKFWTRNRPGDKM 92
BLAST of mRNA_H-elongata_contig48159.11958.1 vs. uniprot
Match: V5GSI5_ANOGL (Pre-mRNA 3' end processing protein (Fragment) n=2 Tax=Anoplophora glabripennis TaxID=217634 RepID=V5GSI5_ANOGL) HSP 1 Score: 121 bits (304), Expect = 3.180e-33 Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = 3
Query: 12 TLQGHGQDVTSLAWHPHHEKLFVSGGYDGKLMYWIVGSEKPYAEIEYAHEAMAVWDLGWHPMGHVLASGSNDHTVKFWVRNRVGDPM 272
T +GH ++ +S+AWHP HE LF SGG DG +M+W VG++K IE AH+++ VW L WHP+GH+L SGSNDHT KFW RNR GD M
Sbjct: 62 TFRGHKKEASSVAWHPVHEGLFCSGGSDGAIMFWHVGADKEVGAIEQAHDSI-VWTLAWHPLGHILCSGSNDHTSKFWTRNRPGDQM 147
BLAST of mRNA_H-elongata_contig48159.11958.1 vs. uniprot
Match: A0A2B4SC26_STYPI (Pre-mRNA 3' end processing protein WDR33 n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4SC26_STYPI) HSP 1 Score: 129 bits (324), Expect = 1.040e-32 Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 3
Query: 12 TLQGHGQDVTSLAWHPHHEKLFVSGGYDGKLMYWIVGSEKPYAEIEYAHEAMAVWDLGWHPMGHVLASGSNDHTVKFWVRNRVGDPM 272
T +GH ++ T+++WHP HE LFVSGG DG +M+W+VG+EK +E AHE M VW L WHP+GH+L SGSNDH+ KFW RNR+GD M
Sbjct: 326 TFRGHKREATAISWHPVHESLFVSGGSDGSMMFWVVGAEKDVGNMEMAHEGM-VWSLAWHPLGHILCSGSNDHSSKFWTRNRLGDKM 411
BLAST of mRNA_H-elongata_contig48159.11958.1 vs. uniprot
Match: A0A7S1UN25_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UN25_9STRA) HSP 1 Score: 120 bits (300), Expect = 1.250e-32 Identity = 50/89 (56.18%), Postives = 68/89 (76.40%), Query Frame = 3
Query: 12 TLQGHGQDVTSLAWHPHHEKLFVSGGYDGKLMYWIVGSE-----KPYAEIEYAHEAMAVWDLGWHPMGHVLASGSNDHTVKFWVRNRVG 263
+L+GH ++VTS+AWHPH+E +F SGG DG L+YW VG++ +P A++ +AH+ MA+WDL WHP GH+LA+GSND KFW RNR G
Sbjct: 43 SLKGHNKEVTSIAWHPHYESVFASGGMDGTLLYWNVGAKGSMNNEPAAKVPFAHD-MAIWDLAWHPCGHMLATGSNDRQTKFWARNRFG 130
BLAST of mRNA_H-elongata_contig48159.11958.1 vs. uniprot
Match: UPI0009E42302 (pre-mRNA 3' end processing protein WDR33-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E42302) HSP 1 Score: 129 bits (323), Expect = 1.430e-32 Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 3
Query: 12 TLQGHGQDVTSLAWHPHHEKLFVSGGYDGKLMYWIVGSEKPYAEIEYAHEAMAVWDLGWHPMGHVLASGSNDHTVKFWVRNRVGDPM 272
T +GH ++ T+++WHP HE LFVSGG DG +M+W+VG+EK +E AHE M VW L WHP+GH+L SGSNDH+ KFW RNR+GD M
Sbjct: 343 TFRGHKREATAISWHPVHESLFVSGGSDGSMMFWVVGAEKDVGNMEMAHEGM-VWSLAWHPLGHILCSGSNDHSSKFWTRNRLGDRM 428
BLAST of mRNA_H-elongata_contig48159.11958.1 vs. uniprot
Match: UPI000A2A5BB4 (pre-mRNA 3' end processing protein WDR33 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A5BB4) HSP 1 Score: 119 bits (297), Expect = 1.840e-32 Identity = 48/87 (55.17%), Postives = 63/87 (72.41%), Query Frame = 3
Query: 12 TLQGHGQDVTSLAWHPHHEKLFVSGGYDGKLMYWIVGSEKPYAEIEYAHEAMAVWDLGWHPMGHVLASGSNDHTVKFWVRNRVGDPM 272
+ +GH ++ T++AWHP HE LF SGG DG +M+W G EK +E AH+ M VW L WHP+GH+L SGSNDH+ KFW RN++GD M
Sbjct: 34 SFRGHKREATAIAWHPIHESLFASGGSDGAIMFWNAGVEKDVGNMESAHDGM-VWSLAWHPLGHILCSGSNDHSSKFWTRNKLGDRM 119
BLAST of mRNA_H-elongata_contig48159.11958.1 vs. uniprot
Match: A0A8J4Q399_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q399_9MYCE) HSP 1 Score: 127 bits (318), Expect = 4.280e-32 Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 3
Query: 30 QDVTSLAWHPHHEKLFVSGGYDGKLMYWIVGSEKPYAEIEYAHEAMAVWDLGWHPMGHVLASGSNDHTVKFWVRNRVGDPM 272
+++TS+AWHP HE LFVSGG+DG ++YW+VG + P EI AHEA +VW L WHP+GH+LASGSNDHT KFW RNR D M
Sbjct: 365 KEMTSVAWHPQHEDLFVSGGFDGSILYWVVGQDNPQGEIYSAHEA-SVWSLSWHPIGHILASGSNDHTTKFWCRNRPADTM 444 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48159.11958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig48159.11958.1 >prot_H-elongata_contig48159.11958.1 ID=prot_H-elongata_contig48159.11958.1|Name=mRNA_H-elongata_contig48159.11958.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp AQPLPFRDTDRTLPLLHGTRTTRSSSLAEATTESSCTGLLGQRSPTLRSSback to top mRNA from alignment at H-elongata_contig48159:3000..4139- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig48159.11958.1 ID=mRNA_H-elongata_contig48159.11958.1|Name=mRNA_H-elongata_contig48159.11958.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1140bp|location=Sequence derived from alignment at H-elongata_contig48159:3000..4139- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig48159:3000..4139- >mRNA_H-elongata_contig48159.11958.1 ID=mRNA_H-elongata_contig48159.11958.1|Name=mRNA_H-elongata_contig48159.11958.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig48159:3000..4139- (Himanthalia elongata Himel1 dioecious)back to top |