mRNA_H-elongata_contig4815.11957.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig4815.11957.1 vs. uniprot
Match: D8LLZ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLZ1_ECTSI) HSP 1 Score: 775 bits (2002), Expect = 2.290e-249 Identity = 573/1543 (37.14%), Postives = 776/1543 (50.29%), Query Frame = 1
Query: 277 MMESIIRDLEKSALVKRTQKQFADLKGELRRKEQHIASLKAIQNSNHVLNPAEANEPLTDKDERIIAQSNQQATEAGYGQVPRSSHNTANCTKPQLAELERLRAQNYSMRAEIAGLH---------SELHAVNSR-DRKSETYSGEIRDSRDFSAEGGIDKRDSTSGPLFHEGQAVECQTVGLGAWRSAVVDSVRLCIDTMGG-------------SSGRRSKAYTYTVWLDKGGSESG----VPEARIRLA-KGDDLGSGTSPSIVHRG--SKTIIRAKIFRSGETILARDG------ESKGKWIRAEVIRRNEDGTYCVVFDGSVGE-QNLHSAMLRSTDDLEQNAASGGGNAIDADDDNQREQDKSGVASAGEEAELRYEEKREILLAAARDAFLDIVEVGRGVLARYPGKDTWGAGTVVGQGKDELHLSVDFDSGDFVENLPFIFVRPRLAGNILSDQGHVNPGDAVLAQK---DDTLSS--GDWCPARFKRYEK--GGNCSLVFAGEAATTTTRRGRAQLLYGGTK----------KCDPPEIPDVPPLPTKPVRAKKHRVGDIVMACIPKIRAWMPALVRMSKGRGRYSVEWADGEKVDSLLFMFIATLGSRTKENVPTTIIERQPLCQNRLAGSSNVRRDEGTFEGNGATGEVQNALVAQSCGEDGIDGETAKVTKTYVRLRQPQLKVGEPVLAKTLKDS-VWAPGAINKVLGDSKYDIIFTDGSTVEGLSFLFIRALDLGTLSDSGDD---------------SEEIAGPGRDYYKVGDTVYVLKRGQSLENIPLNTRNRDLWRAGVVGRVSNGRYTVVYDGEEGKPQESRIHVERVRPRQRIRQKVMENNDTVLALSKKPGRGWMMGTIAGRTGKGTYNIAFSDGSEEDDIRFANLRRVESNGKEEDKHHRTDKPAMRAIRQRRFRLGKFVLARHRESRKWGVVQVLEALSDGRYDLKLAGGEGSVFKGVSFQSMRHLDIAQVLADNPLPAGCKSRGVGEDQSQPLDNGPDTGDR--TLSQSISAGIWVEQDAN--HCSVTDTVDDARKSIFHMKT-----------------------DNVPTPVVKAG-----------LDIGSNVYVLRRGKSADVDVKDTSAWRSGKIIFIRDNGALAVEYDEPGNPKEDRVADYRVRPRIVLD--------------------------HCDSVRRAENNTHDCLPET--FVEGDIVV--TRAEGSDEVSLAAVNASLGLSMHRVSFLDGSGTTELESHQLSHLTNISQVGRALSTGGKGIVIKKNASKMRKLRLGELVLAQKDCKT----WKNQPWFAAIVLEAAGGGMYSLRFEGDEDPTRVHLTKIRPLKTNISGRGRAGGEALVLRVSEASFNLSTAPSTARHTQPHLILAAGERGGRGEAWDAPWLHA----------DAVEAGSARDQES-----------FVVRGRARPGSRNPTWTDKKGDVFFLSLEGLEEPALFLCLEDGGAKTSTTNRPDRGG-----GGRVSEEAILAVGCIPVPLD 4401
++ESI++D+EKS+ +K +Q ADLK +L KE+ +A+L+ Q + L AE E L + ER+IA+SN + G+ +S N+A+ ++ + + +EL V R D S G +RD G + + G F+EGQAVEC+ G +W A VDSVRL I+ +GG S + Y Y V+ D G E+G VPE RIR A GD G G S V R +T+IR+++F +G+ +L RDG + KW EVIRRN++GTY V+ G E ++ H MLR+ D + + SG D D Q K+ S EEAE+RY E+RE LL AR + VG+ V+A+ G W +G VV D L V+FDSGD +NLP IFVRPR G+ L+ G GDAVLAQK DT S GDW ARF+ Y++ +C + F GE A++ + R + LY + TKPVRAKKHR GDIV+ACIP ++ W PA++ KG GRYSVEWAD + LLFM IA++ +++ ++ ++ + + + R G G TG + S E G T V RLRQ L VGEPVLAK D W+PG++ + G +YDI FTDG+T E LSFLF+R L SGDD + E+ G VGD+VYVLKRG S+E + NRDLWR V V++GRYTV Y+GEEGKP+ESR+ ER+R R IRQK ++ D VLALSK PGRGW+MG + R G Y I+F+DG+E D IRF NLRRV + + E+K DKP+ RAIRQRRF+ G+ L +H E+RKW +V+VLEAL GRYDL+ GV FQ +RHLD+A D+ G + P D+ G+R T S ++S W + + H + +H + D P + L IGS+VYVLRRGK D D++D ++WRSGK++F+R NG AVEYDE G+PKEDR+A+ R+R R+ + + D V E D + F GD+ TR G + V+A LG ++RV F DGSGT EL+S +LSH ++ S+ ++K R L G+ V+A++ + + W AA V++ YS+ F GD +P RVH T+++PL+ + + R L LRV+E SF+L A S ARHT P LILA GER DA WLH DA GS R Q + F+ RG ARPGSRNP+W D + F+LSL+GL++PALF+ LEDG K RGG GG+ A LA CIPVPL+
Sbjct: 130 VLESIVKDIEKSSRMKHAMEQVADLKADLSLKEKQVAALRKSQAVEYTLKLAEEKEALQVRVERLIAESNSKHDSGIRGRT--TSFNSASSSQKEQSAASXXXXXXXXXXXXXXXXXXXXXXXXXXAELELVEMRGDSGSGREHGSRSQNRDNMDRGRARQHCHSDGARFYEGQAVECRKQGSDSWLPATVDSVRLTIEPLGGXXXXXXXXXXXXXDSRGSHRTYMYGVYFD--GEETGRREDVPEFRIRAAASGDGNGPGLGSSRVVRDCDGETVIRSRVFGAGDLVLVRDGGGGRTNQDNKKWTLGEVIRRNDNGTYRVLVSGGQAEGKDFHPTMLRAQDGPKNSFDSG----CDVHDQPGASQTKTKATSPAEEAEIRYAERREELLELARGDLPAPLHVGQEVIAKSGGSTVWSSGVVVATDSDNLRCRVEFDSGDVEDNLPCIFVRPRRGGD-LAPGGDARTGDAVLAQKTRKQDTRSGDRGDWFAARFRSYDEDDADSCYVTFDGERASSRLQATRVRFLYPSARGGXXXXXXXXXXXXXXXXXXXXXXTKPVRAKKHREGDIVLACIPTVKKWTPAVITGVKGHGRYSVEWADFVREKPLLFMHIASMQGPSRKRA-ISVGHKKSSDDSADSHHATTRAPASGASGGGDTGSDERRSRVLSA-ESSAGGITPSV-----RLRQRALNVGEPVLAKKAPDQGFWSPGSVTRADGGGRYDIRFTDGTTAEDLSFLFVRGLS--AEQSSGDDRGGEVDTRSGRITSDTSEMHPSGERDPVVGDSVYVLKRGHSVEITSQDMHNRDLWRVATVTAVASGRYTVQYNGEEGKPKESRVVAERLRVRNVIRQKAVQMGDAVLALSKTPGRGWVMGAVTARGSDGKYTISFTDGTESDQIRFVNLRRVVGHAEGEEKDDHNDKPSPRAIRQRRFKKGELALTKHSETRKWVIVKVLEALPSGRYDLQFLEEGSPNALGVPFQHIRHLDLACFAGDSQGATGNGXXXXXXXKRSPRDDMA-VGERIPTESHTMSDEGWDGNNGHDYHAHSGHRSRGGSEEGYHQEKRVEKPRQQREASAGGGSTDYDERDETPRNRREGDGNRGASSETRPLTIGSDVYVLRRGKRQDADLQDKTSWRSGKVVFVRSNGTFAVEYDEDGSPKEDRIAENRLRRRLNNNDKDXXXXXXXXXXXXXXXXSNNDFGRYQDRVGSDEEYGDDFHRQDNKFEAGDMAFAQTRGWGRKNWTRVTVDAYLGKGLYRVEFADGSGTKELDSKKLSHTDPSGTTHKSKSSARAKT--DPQSTKSRWLDAGDPVVARRAASSNDDGASGRKWEAAKVVKVIDEEYYSVLFSGDPEPVRVHFTEVKPLEDHAADNSRLVTTGLFLRVTEPSFDLKIAASAARHTSPRLILATGERANE---HDALWLHHKNIDNDENDDDAWSNGSKRVQRNRNHNDGTKAVGFLSRGAARPGSRNPSWRDGE---FWLSLKGLDDPALFVALEDG-KKVQEQRGGGRGGWKRGEGGQ-GGVAFLAEACIPVPLE 1643 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4815.11957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig4815.11957.1 >prot_H-elongata_contig4815.11957.1 ID=prot_H-elongata_contig4815.11957.1|Name=mRNA_H-elongata_contig4815.11957.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1467bp NHPPARPSSHRARGPRTENLASRKRRHSSEVDNGGCERSKGSELVILQQKback to top mRNA from alignment at H-elongata_contig4815:2432..10106- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig4815.11957.1 ID=mRNA_H-elongata_contig4815.11957.1|Name=mRNA_H-elongata_contig4815.11957.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7675bp|location=Sequence derived from alignment at H-elongata_contig4815:2432..10106- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig4815:2432..10106- >mRNA_H-elongata_contig4815.11957.1 ID=mRNA_H-elongata_contig4815.11957.1|Name=mRNA_H-elongata_contig4815.11957.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=8802bp|location=Sequence derived from alignment at H-elongata_contig4815:2432..10106- (Himanthalia elongata Himel1 dioecious)back to top |