mRNA_H-elongata_contig48096.11951.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig48096.11951.1 vs. uniprot
Match: D8LHP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP2_ECTSI) HSP 1 Score: 171 bits (434), Expect = 1.910e-47 Identity = 86/100 (86.00%), Postives = 95/100 (95.00%), Query Frame = 1
Query: 13 SELDRLTGKPREDDVLLFAVAVCGPYMSLRDYRYKVKLTPGKQKRGKASKQAIEVFLRTKDTPASQKALIKGVTDNECVAAMIGAVKVSVAGLAQANQAR 312
SELDRLTGKPR++DVLLFAV VCGPYMSLRDY+YKVKLTPGKQKRGKASKQAIEVF R++DTPASQK L+KG+TDNECVAAMIG VKV+VAGLAQA QA+
Sbjct: 1250 SELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRSRDTPASQKGLMKGITDNECVAAMIGDVKVAVAGLAQATQAK 1349
BLAST of mRNA_H-elongata_contig48096.11951.1 vs. uniprot
Match: A0A061RK70_9CHLO (Nuclear export mediator factor nemf-like n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RK70_9CHLO) HSP 1 Score: 113 bits (282), Expect = 8.650e-29 Identity = 53/100 (53.00%), Postives = 76/100 (76.00%), Query Frame = 1
Query: 13 SELDRLTGKPREDDVLLFAVAVCGPYMSLRDYRYKVKLTPGKQKRGKASKQAIEVFLRTKDTPASQKALIKGVTDNECVAAMIGAVKVSVAGLAQANQAR 312
+ELD LTG PR DD+LLFA+ VC PY +L Y+Y+VKLTPG+QK+GKA+K+A+++F R + + +K LI+ VTD E V+ M+G V++S+ GLA A A+
Sbjct: 144 TELDSLTGIPRXDDLLLFAIPVCAPYAALNGYKYRVKLTPGRQKKGKAAKEALDIFGRVNEATSREKELIRAVTDTEAVSGMVGPVQISMPGLAAAKAAQ 243
BLAST of mRNA_H-elongata_contig48096.11951.1 vs. uniprot
Match: A0A388M4N2_CHABU (CCHC-type domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M4N2_CHABU) HSP 1 Score: 114 bits (285), Expect = 2.380e-27 Identity = 58/98 (59.18%), Postives = 73/98 (74.49%), Query Frame = 1
Query: 13 SELDRLTGKPREDDVLLFAVAVCGPYMSLRDYRYKVKLTPGKQKRGKASKQAIEVFLRTKDTPASQKALIKGVTDNECVAAMIGAVKVSVAGLAQANQ 306
+ELD LTG PREDDVLL+AV VCGPY +L++Y+Y+VKLTPG K+GKA++ A+EVF RT D QK L+K V + E VA MIG VKV+ GL + Q
Sbjct: 1276 TELDSLTGVPREDDVLLYAVPVCGPYSALQNYKYRVKLTPGTVKKGKAARTAVEVFARTVDVSPRQKDLMKAVPETELVAVMIGNVKVAAPGLMKIRQ 1373
BLAST of mRNA_H-elongata_contig48096.11951.1 vs. uniprot
Match: A0A7S2HPI5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HPI5_9STRA) HSP 1 Score: 105 bits (262), Expect = 4.580e-27 Identity = 54/100 (54.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query: 13 SELDRLTGKPREDDVLLFAVAVCGPYMSLRDYRYKVKLTPGKQKRGKASKQAIEVFLRTKDTPASQKALIKGVTDNECVAAMIGAVKVSVAGLAQANQAR 312
+EL++LTG P DV++F V VCGPY SL+ Y+YKVKLTPG K+G+A KQA++VF R K+ ++ LIK V+DNE V +IG VKVS GL A A+
Sbjct: 23 TELNKLTGLPLPSDVIMFCVPVCGPYQSLQRYKYKVKLTPGSTKKGRAGKQALDVFTRMKECSPRERDLIKFVSDNELVQTIIGEVKVSTPGLHAAFNAK 122
BLAST of mRNA_H-elongata_contig48096.11951.1 vs. uniprot
Match: A0A1E7FRS9_9STRA (DUF814-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FRS9_9STRA) HSP 1 Score: 110 bits (276), Expect = 3.850e-26 Identity = 57/98 (58.16%), Postives = 70/98 (71.43%), Query Frame = 1
Query: 13 SELDRLTGKPREDDVLLFAVAVCGPYMSLRDYRYKVKLTPGKQKRGKASKQAIEVFLRTKDTPASQKALIKGVTDNECVAAMIGAVKVSVAGLAQANQ 306
+ELD+LTGKP +D++LFAV VC PY SL Y Y+VKLTPG KRGKASKQ I++FLR P + LIK V DNE V A+ G VK+S AG ++A Q
Sbjct: 909 AELDKLTGKPLGEDLILFAVPVCAPYQSLSKYAYRVKLTPGNMKRGKASKQCIDMFLRESAVPEHCRGLIKNVADNEWVQAICGDVKISAAGASKAIQ 1006
BLAST of mRNA_H-elongata_contig48096.11951.1 vs. uniprot
Match: A0A5J4XG72_9CHLO (Nuclear export mediator factor NEMF (Fragment) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XG72_9CHLO) HSP 1 Score: 108 bits (270), Expect = 7.340e-26 Identity = 52/98 (53.06%), Postives = 71/98 (72.45%), Query Frame = 1
Query: 13 SELDRLTGKPREDDVLLFAVAVCGPYMSLRDYRYKVKLTPGKQKRGKASKQAIEVFLRTKDTPASQKALIKGVTDNECVAAMIGAVKVSVAGLAQANQ 306
++LD LTG PR DDVLLFAV VC PY +L+ Y+YK+KLTPG Q++GKA++QA+E+ R DTP +K IK V D + + A +G VK+S+ GL + Q
Sbjct: 305 TQLDSLTGVPRPDDVLLFAVPVCAPYSALQGYKYKLKLTPGTQRKGKAARQAVELLSRQPDTPVREKDFIKAVPDMDMINAFVGTVKLSMPGLVKIKQ 402
BLAST of mRNA_H-elongata_contig48096.11951.1 vs. uniprot
Match: A0A835ZCK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCK8_9STRA) HSP 1 Score: 107 bits (266), Expect = 8.720e-25 Identity = 55/95 (57.89%), Postives = 69/95 (72.63%), Query Frame = 1
Query: 7 AASELDRLTGKPREDDVLLFAVAVCGPYMSLRDYRYKVKLTPGKQKRGKASKQAIEVFLRTKDTPASQKALIKGVTDNECVAAMIGAVKVSVAGL 291
AAS LD LTG P +D+LL AV VC PY L+ Y++KVKLTPG K+GKA+KQ++EVF+R KD +K LIK +TD E VA M+G VK+S GL
Sbjct: 1269 AASVLDALTGVPLVNDILLHAVPVCAPYSCLQRYKFKVKLTPGTVKKGKAAKQSVEVFVRNKDAQPREKELIKALTDPEMVAVMLGDVKISTPGL 1363
BLAST of mRNA_H-elongata_contig48096.11951.1 vs. uniprot
Match: A0A6U1AHC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1AHC6_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.180e-24 Identity = 53/99 (53.54%), Postives = 73/99 (73.74%), Query Frame = 1
Query: 16 ELDRLTGKPREDDVLLFAVAVCGPYMSLRDYRYKVKLTPGKQKRGKASKQAIEVFLRTKDTPASQKALIKGVTDNECVAAMIGAVKVSVAGLAQANQAR 312
+L+RLTG P DDVLLF + VC PY SL Y+++VKLTPG QK+GKA KQ+++VF R+K+ + ++ LI+ V+DNE V ++IG VKVS GL A A+
Sbjct: 1110 DLNRLTGVPHVDDVLLFCIPVCAPYQSLNGYKFRVKLTPGTQKKGKAGKQSMDVFQRSKECTSRERDLIRMVSDNELVHSIIGDVKVSTPGLQAAQNAK 1208
BLAST of mRNA_H-elongata_contig48096.11951.1 vs. uniprot
Match: A0A383VF94_TETOB (Uncharacterized protein (Fragment) n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VF94_TETOB) HSP 1 Score: 105 bits (263), Expect = 2.140e-24 Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 1
Query: 1 AAAASELDRLTGKPREDDVLLFAVAVCGPYMSLRDYRYKVKLTPGKQKRGKASKQAIEVFLRTKDTPASQKALIKGVTDNECVAAMIGAVKVSVAGLAQANQA 309
AAA ELD LTG PR DDVL++AV V GPY +L +Y++KVKLTPG K+GKA KQA+E+ R ++ ++ L++ V D + V AM+G VK+S AGL Q QA
Sbjct: 631 AAALKELDSLTGVPRADDVLMYAVPVVGPYAALANYKFKVKLTPGTLKKGKAVKQAVELLARGQEGLQRERELMRAVPDMDMVNAMVGTVKISAAGLQQLKQA 733
BLAST of mRNA_H-elongata_contig48096.11951.1 vs. uniprot
Match: UPI000B8CF237 (nuclear export mediator factor NEMF-like n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CF237) HSP 1 Score: 98.2 bits (243), Expect = 3.380e-24 Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = 1
Query: 13 SELDRLTGKPREDDVLLFAVAVCGPYMSLRDYRYKVKLTPGKQKRGKASKQAIEVFLRTKDTPASQKALIKGVTDNECVAAMIGAVKVSVAGLAQANQ 306
+++D LTG P D+LL+AV VCGPY +L+ Y+Y+VK+ PG K+GKA+K A+ +F + +K L+K TD E VAA+IG VK++ AGL Q Q
Sbjct: 23 NDMDYLTGNPLSSDILLYAVPVCGPYSALQSYKYRVKIIPGSAKKGKAAKTAMNLFSHMSEATNREKELMKACTDPELVAAIIGNVKITAAGLTQLKQ 120 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48096.11951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig48096.11951.1 >prot_H-elongata_contig48096.11951.1 ID=prot_H-elongata_contig48096.11951.1|Name=mRNA_H-elongata_contig48096.11951.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp AAAASELDRLTGKPREDDVLLFAVAVCGPYMSLRDYRYKVKLTPGKQKRGback to top mRNA from alignment at H-elongata_contig48096:195..944- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig48096.11951.1 ID=mRNA_H-elongata_contig48096.11951.1|Name=mRNA_H-elongata_contig48096.11951.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=750bp|location=Sequence derived from alignment at H-elongata_contig48096:195..944- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig48096:195..944- >mRNA_H-elongata_contig48096.11951.1 ID=mRNA_H-elongata_contig48096.11951.1|Name=mRNA_H-elongata_contig48096.11951.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig48096:195..944- (Himanthalia elongata Himel1 dioecious)back to top |