mRNA_H-elongata_contig48096.11951.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48096.11951.1
Unique NamemRNA_H-elongata_contig48096.11951.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig48096.11951.1 vs. uniprot
Match: D8LHP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP2_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 1.910e-47
Identity = 86/100 (86.00%), Postives = 95/100 (95.00%), Query Frame = 1
Query:   13 SELDRLTGKPREDDVLLFAVAVCGPYMSLRDYRYKVKLTPGKQKRGKASKQAIEVFLRTKDTPASQKALIKGVTDNECVAAMIGAVKVSVAGLAQANQAR 312
            SELDRLTGKPR++DVLLFAV VCGPYMSLRDY+YKVKLTPGKQKRGKASKQAIEVF R++DTPASQK L+KG+TDNECVAAMIG VKV+VAGLAQA QA+
Sbjct: 1250 SELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRSRDTPASQKGLMKGITDNECVAAMIGDVKVAVAGLAQATQAK 1349          
BLAST of mRNA_H-elongata_contig48096.11951.1 vs. uniprot
Match: A0A061RK70_9CHLO (Nuclear export mediator factor nemf-like n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RK70_9CHLO)

HSP 1 Score: 113 bits (282), Expect = 8.650e-29
Identity = 53/100 (53.00%), Postives = 76/100 (76.00%), Query Frame = 1
Query:   13 SELDRLTGKPREDDVLLFAVAVCGPYMSLRDYRYKVKLTPGKQKRGKASKQAIEVFLRTKDTPASQKALIKGVTDNECVAAMIGAVKVSVAGLAQANQAR 312
            +ELD LTG PR DD+LLFA+ VC PY +L  Y+Y+VKLTPG+QK+GKA+K+A+++F R  +  + +K LI+ VTD E V+ M+G V++S+ GLA A  A+
Sbjct:  144 TELDSLTGIPRXDDLLLFAIPVCAPYAALNGYKYRVKLTPGRQKKGKAAKEALDIFGRVNEATSREKELIRAVTDTEAVSGMVGPVQISMPGLAAAKAAQ 243          
BLAST of mRNA_H-elongata_contig48096.11951.1 vs. uniprot
Match: A0A388M4N2_CHABU (CCHC-type domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M4N2_CHABU)

HSP 1 Score: 114 bits (285), Expect = 2.380e-27
Identity = 58/98 (59.18%), Postives = 73/98 (74.49%), Query Frame = 1
Query:   13 SELDRLTGKPREDDVLLFAVAVCGPYMSLRDYRYKVKLTPGKQKRGKASKQAIEVFLRTKDTPASQKALIKGVTDNECVAAMIGAVKVSVAGLAQANQ 306
            +ELD LTG PREDDVLL+AV VCGPY +L++Y+Y+VKLTPG  K+GKA++ A+EVF RT D    QK L+K V + E VA MIG VKV+  GL +  Q
Sbjct: 1276 TELDSLTGVPREDDVLLYAVPVCGPYSALQNYKYRVKLTPGTVKKGKAARTAVEVFARTVDVSPRQKDLMKAVPETELVAVMIGNVKVAAPGLMKIRQ 1373          
BLAST of mRNA_H-elongata_contig48096.11951.1 vs. uniprot
Match: A0A7S2HPI5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HPI5_9STRA)

HSP 1 Score: 105 bits (262), Expect = 4.580e-27
Identity = 54/100 (54.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:   13 SELDRLTGKPREDDVLLFAVAVCGPYMSLRDYRYKVKLTPGKQKRGKASKQAIEVFLRTKDTPASQKALIKGVTDNECVAAMIGAVKVSVAGLAQANQAR 312
            +EL++LTG P   DV++F V VCGPY SL+ Y+YKVKLTPG  K+G+A KQA++VF R K+    ++ LIK V+DNE V  +IG VKVS  GL  A  A+
Sbjct:   23 TELNKLTGLPLPSDVIMFCVPVCGPYQSLQRYKYKVKLTPGSTKKGRAGKQALDVFTRMKECSPRERDLIKFVSDNELVQTIIGEVKVSTPGLHAAFNAK 122          
BLAST of mRNA_H-elongata_contig48096.11951.1 vs. uniprot
Match: A0A1E7FRS9_9STRA (DUF814-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FRS9_9STRA)

HSP 1 Score: 110 bits (276), Expect = 3.850e-26
Identity = 57/98 (58.16%), Postives = 70/98 (71.43%), Query Frame = 1
Query:   13 SELDRLTGKPREDDVLLFAVAVCGPYMSLRDYRYKVKLTPGKQKRGKASKQAIEVFLRTKDTPASQKALIKGVTDNECVAAMIGAVKVSVAGLAQANQ 306
            +ELD+LTGKP  +D++LFAV VC PY SL  Y Y+VKLTPG  KRGKASKQ I++FLR    P   + LIK V DNE V A+ G VK+S AG ++A Q
Sbjct:  909 AELDKLTGKPLGEDLILFAVPVCAPYQSLSKYAYRVKLTPGNMKRGKASKQCIDMFLRESAVPEHCRGLIKNVADNEWVQAICGDVKISAAGASKAIQ 1006          
BLAST of mRNA_H-elongata_contig48096.11951.1 vs. uniprot
Match: A0A5J4XG72_9CHLO (Nuclear export mediator factor NEMF (Fragment) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XG72_9CHLO)

HSP 1 Score: 108 bits (270), Expect = 7.340e-26
Identity = 52/98 (53.06%), Postives = 71/98 (72.45%), Query Frame = 1
Query:   13 SELDRLTGKPREDDVLLFAVAVCGPYMSLRDYRYKVKLTPGKQKRGKASKQAIEVFLRTKDTPASQKALIKGVTDNECVAAMIGAVKVSVAGLAQANQ 306
            ++LD LTG PR DDVLLFAV VC PY +L+ Y+YK+KLTPG Q++GKA++QA+E+  R  DTP  +K  IK V D + + A +G VK+S+ GL +  Q
Sbjct:  305 TQLDSLTGVPRPDDVLLFAVPVCAPYSALQGYKYKLKLTPGTQRKGKAARQAVELLSRQPDTPVREKDFIKAVPDMDMINAFVGTVKLSMPGLVKIKQ 402          
BLAST of mRNA_H-elongata_contig48096.11951.1 vs. uniprot
Match: A0A835ZCK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCK8_9STRA)

HSP 1 Score: 107 bits (266), Expect = 8.720e-25
Identity = 55/95 (57.89%), Postives = 69/95 (72.63%), Query Frame = 1
Query:    7 AASELDRLTGKPREDDVLLFAVAVCGPYMSLRDYRYKVKLTPGKQKRGKASKQAIEVFLRTKDTPASQKALIKGVTDNECVAAMIGAVKVSVAGL 291
            AAS LD LTG P  +D+LL AV VC PY  L+ Y++KVKLTPG  K+GKA+KQ++EVF+R KD    +K LIK +TD E VA M+G VK+S  GL
Sbjct: 1269 AASVLDALTGVPLVNDILLHAVPVCAPYSCLQRYKFKVKLTPGTVKKGKAAKQSVEVFVRNKDAQPREKELIKALTDPEMVAVMLGDVKISTPGL 1363          
BLAST of mRNA_H-elongata_contig48096.11951.1 vs. uniprot
Match: A0A6U1AHC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1AHC6_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.180e-24
Identity = 53/99 (53.54%), Postives = 73/99 (73.74%), Query Frame = 1
Query:   16 ELDRLTGKPREDDVLLFAVAVCGPYMSLRDYRYKVKLTPGKQKRGKASKQAIEVFLRTKDTPASQKALIKGVTDNECVAAMIGAVKVSVAGLAQANQAR 312
            +L+RLTG P  DDVLLF + VC PY SL  Y+++VKLTPG QK+GKA KQ+++VF R+K+  + ++ LI+ V+DNE V ++IG VKVS  GL  A  A+
Sbjct: 1110 DLNRLTGVPHVDDVLLFCIPVCAPYQSLNGYKFRVKLTPGTQKKGKAGKQSMDVFQRSKECTSRERDLIRMVSDNELVHSIIGDVKVSTPGLQAAQNAK 1208          
BLAST of mRNA_H-elongata_contig48096.11951.1 vs. uniprot
Match: A0A383VF94_TETOB (Uncharacterized protein (Fragment) n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VF94_TETOB)

HSP 1 Score: 105 bits (263), Expect = 2.140e-24
Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 1
Query:    1 AAAASELDRLTGKPREDDVLLFAVAVCGPYMSLRDYRYKVKLTPGKQKRGKASKQAIEVFLRTKDTPASQKALIKGVTDNECVAAMIGAVKVSVAGLAQANQA 309
            AAA  ELD LTG PR DDVL++AV V GPY +L +Y++KVKLTPG  K+GKA KQA+E+  R ++    ++ L++ V D + V AM+G VK+S AGL Q  QA
Sbjct:  631 AAALKELDSLTGVPRADDVLMYAVPVVGPYAALANYKFKVKLTPGTLKKGKAVKQAVELLARGQEGLQRERELMRAVPDMDMVNAMVGTVKISAAGLQQLKQA 733          
BLAST of mRNA_H-elongata_contig48096.11951.1 vs. uniprot
Match: UPI000B8CF237 (nuclear export mediator factor NEMF-like n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CF237)

HSP 1 Score: 98.2 bits (243), Expect = 3.380e-24
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = 1
Query:   13 SELDRLTGKPREDDVLLFAVAVCGPYMSLRDYRYKVKLTPGKQKRGKASKQAIEVFLRTKDTPASQKALIKGVTDNECVAAMIGAVKVSVAGLAQANQ 306
            +++D LTG P   D+LL+AV VCGPY +L+ Y+Y+VK+ PG  K+GKA+K A+ +F    +    +K L+K  TD E VAA+IG VK++ AGL Q  Q
Sbjct:   23 NDMDYLTGNPLSSDILLYAVPVCGPYSALQSYKYRVKIIPGSAKKGKAAKTAMNLFSHMSEATNREKELMKACTDPELVAAIIGNVKITAAGLTQLKQ 120          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48096.11951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHP2_ECTSI1.910e-4786.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A061RK70_9CHLO8.650e-2953.00Nuclear export mediator factor nemf-like n=1 Tax=T... [more]
A0A388M4N2_CHABU2.380e-2759.18CCHC-type domain-containing protein n=1 Tax=Chara ... [more]
A0A7S2HPI5_9STRA4.580e-2754.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1E7FRS9_9STRA3.850e-2658.16DUF814-domain-containing protein n=1 Tax=Fragilari... [more]
A0A5J4XG72_9CHLO7.340e-2653.06Nuclear export mediator factor NEMF (Fragment) n=1... [more]
A0A835ZCK8_9STRA8.720e-2557.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U1AHC6_9STRA1.180e-2453.54Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A383VF94_TETOB2.140e-2453.40Uncharacterized protein (Fragment) n=1 Tax=Tetrade... [more]
UPI000B8CF2373.380e-2447.96nuclear export mediator factor NEMF-like n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48096contigH-elongata_contig48096:195..944 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.6
Seed ortholog evalue3.8e-40
Seed eggNOG ortholog2880.D8LHP2
KEGG koko:K10589
KEGG Pathwayko04120,map04120
EggNOG free text desc.actin binding
EggNOG OGsCOG1293@1,KOG2030@2759
EC2.3.2.26
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930793.4700596-CDS-H-elongata_contig48096:194..3891622930793.4700596-CDS-H-elongata_contig48096:194..389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48096 195..389 -
1691679572.9040294-CDS-H-elongata_contig48096:194..3891691679572.9040294-CDS-H-elongata_contig48096:194..389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48096 195..389 -
1622930793.4884644-CDS-H-elongata_contig48096:827..9441622930793.4884644-CDS-H-elongata_contig48096:827..944Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48096 828..944 -
1691679572.9175143-CDS-H-elongata_contig48096:827..9441691679572.9175143-CDS-H-elongata_contig48096:827..944Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48096 828..944 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48096.11951.1prot_H-elongata_contig48096.11951.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48096 195..944 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48096.11951.1

>prot_H-elongata_contig48096.11951.1 ID=prot_H-elongata_contig48096.11951.1|Name=mRNA_H-elongata_contig48096.11951.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
AAAASELDRLTGKPREDDVLLFAVAVCGPYMSLRDYRYKVKLTPGKQKRG
KASKQAIEVFLRTKDTPASQKALIKGVTDNECVAAMIGAVKVSVAGLAQA
NQAR
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mRNA from alignment at H-elongata_contig48096:195..944-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48096.11951.1 ID=mRNA_H-elongata_contig48096.11951.1|Name=mRNA_H-elongata_contig48096.11951.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=750bp|location=Sequence derived from alignment at H-elongata_contig48096:195..944- (Himanthalia elongata Himel1 dioecious)
GCGGCGGCGGCGAGCGAACTTGATCGTCTGACCGGGAAGCCGCGAGAGGA TGACGTGTTGCTCTTCGCGGTGGCGGTGTGTGGGCCGTACATGTCTTTAC GCGACTACAGATATAAGGTGAGCGCACGTGGTGCCTGTAGAGTTGAGAAA AGGAGGAGGAGAAGGAGGGGGGGTGTTGGCGGTGACTTGAATCGTTAACC CCGAGCTTTACGGGCTGCGAGAAGCCTTGGACGTGTAGAGGTGAATTACA AACCGCAGACTAGATGAGAAATAACAGATTCGCGCGGACAAACGAAGAAT CAATATTTGAGATCGAGAACGCCTCTACTCAATCGCTCCACGGAAAAAAC AATTGCTGCTGCTGCTGGGACCATTACAGTATCAAGCAAGCAAGCCCGCC TGCTACCTTTCCCTTGTAGAAGAAATGATCTTCCCCTACCTACAGTATTA ATATACCGAATCCGAAAGAAAACGGGCGCGGAAACAAACTTTGATTTTAC TACCCCGCACGTAGCTGATTCTATGTTACGTTTATTGTGTACCGTCTGTA ACCAGGTAAAGCTGACGCCGGGAAAACAGAAGCGCGGTAAGGCTTCAAAG CAGGCGATTGAGGTATTCTTGAGAACCAAAGACACGCCCGCCTCTCAGAA GGCGCTGATAAAAGGCGTCACGGATAACGAGTGTGTTGCGGCCATGATCG GCGCCGTGAAGGTGTCCGTCGCGGGTCTGGCGCAAGCGAATCAGGCAAGG
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Coding sequence (CDS) from alignment at H-elongata_contig48096:195..944-

>mRNA_H-elongata_contig48096.11951.1 ID=mRNA_H-elongata_contig48096.11951.1|Name=mRNA_H-elongata_contig48096.11951.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig48096:195..944- (Himanthalia elongata Himel1 dioecious)
GCGGCGGCGGCGAGCGAACTTGATCGTCTGACCGGGAAGCCGCGAGAGGA
TGACGTGTTGCTCTTCGCGGTGGCGGTGTGTGGGCCGTACATGTCTTTAC
GCGACTACAGATATAAGGCGGCGGCGGCGAGCGAACTTGATCGTCTGACC
GGGAAGCCGCGAGAGGATGACGTGTTGCTCTTCGCGGTGGCGGTGTGTGG
GCCGTACATGTCTTTACGCGACTACAGATATAAGGTAAAGCTGACGCCGG
GAAAACAGAAGCGCGGTAAGGCTTCAAAGCAGGCGATTGAGGTATTCTTG
AGAACCAAAGACACGCCCGCCTCTCAGAAGGCGCTGATAAAAGGCGTCAC
GGATAACGAGTGTGTTGCGGCCATGATCGGCGCCGTGAAGGTGTCCGTCG
CGGGTCTGGCGCAAGCGAATCAGGCAAGGGTAAAGCTGACGCCGGGAAAA
CAGAAGCGCGGTAAGGCTTCAAAGCAGGCGATTGAGGTATTCTTGAGAAC
CAAAGACACGCCCGCCTCTCAGAAGGCGCTGATAAAAGGCGTCACGGATA
ACGAGTGTGTTGCGGCCATGATCGGCGCCGTGAAGGTGTCCGTCGCGGGT
CTGGCGCAAGCGAATCAGGCAAGG
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