mRNA_H-elongata_contig48094.11950.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48094.11950.1
Unique NamemRNA_H-elongata_contig48094.11950.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig48094.11950.1 vs. uniprot
Match: D8LSN2_ECTSI (Conserved oligomeric Golgi complex subunit 5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSN2_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 5.600e-19
Identity = 64/129 (49.61%), Postives = 69/129 (53.49%), Query Frame = 1 
Query:    1 MSEQAYVAWLLGGGAAAEATAREDAAGAEAGAGGGSRSGMLKHGDIGYHTARRSPLSPDTSYMAEVGAWAVVQGCLDAYHQRRG-AVSGGGXXGFGAKAAE------VPRVIALLSEAGPALLSGYEAR 366
            MS+QAYV WLLGGGAA E                            G     RS LSPDTSYMAE GAW+VVQ CLD YHQRR  AV+ G     G  AA       +PR + LL EAGPALLS YEAR
Sbjct: 1087 MSQQAYVTWLLGGGAAEEXXXXXXXXXXXXXX---XXXXXXDRASGGKAYTERSTLSPDTSYMAEAGAWSVVQACLDEYHQRRSVAVATGSGNADGGSAATAGSTEMLPRAVGLLPEAGPALLSAYEAR 1212
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48094.11950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSN2_ECTSI5.600e-1949.61Conserved oligomeric Golgi complex subunit 5 n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48094contigH-elongata_contig48094:1824..2658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue1.6e-16
Seed eggNOG ortholog2880.D8LSN2
Preferred nameCOG5
KEGG koko:K20292
GOsGO:0000003,GO:0000139,GO:0000212,GO:0000226,GO:0000280,GO:0000910,GO:0000916,GO:0001675,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005794,GO:0005802,GO:0006810,GO:0006888,GO:0006891,GO:0006996,GO:0006997,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007110,GO:0007111,GO:0007112,GO:0007140,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007290,GO:0008150,GO:0009653,GO:0009987,GO:0010256,GO:0010927,GO:0012505,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0017119,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030029,GO:0030036,GO:0030154,GO:0030865,GO:0030866,GO:0031032,GO:0031090,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032588,GO:0032989,GO:0032991,GO:0033206,GO:0033363,GO:0036213,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044837,GO:0046907,GO:0048193,GO:0048219,GO:0048232,GO:0048285,GO:0048468,GO:0048515,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051301,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0061024,GO:0061640,GO:0061982,GO:0061983,GO:0070013,GO:0070925,GO:0070971,GO:0071840,GO:0098588,GO:0098791,GO:0099023,GO:0140013,GO:1903046
EggNOG free text desc.intra-Golgi vesicle-mediated transport
EggNOG OGsKOG2211@1,KOG2211@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_002295.1
Exons2
Model size387
Cds size387
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930793.401878-CDS-H-elongata_contig48094:1823..19781622930793.401878-CDS-H-elongata_contig48094:1823..1978Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48094 1824..1978 +
1691679572.875275-CDS-H-elongata_contig48094:1823..19781691679572.875275-CDS-H-elongata_contig48094:1823..1978Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48094 1824..1978 +
1622930793.4209208-CDS-H-elongata_contig48094:2426..26581622930793.4209208-CDS-H-elongata_contig48094:2426..2658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48094 2427..2658 +
1691679572.8851748-CDS-H-elongata_contig48094:2426..26581691679572.8851748-CDS-H-elongata_contig48094:2426..2658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48094 2427..2658 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48094.11950.1prot_H-elongata_contig48094.11950.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48094 1824..2658 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48094.11950.1

>prot_H-elongata_contig48094.11950.1 ID=prot_H-elongata_contig48094.11950.1|Name=mRNA_H-elongata_contig48094.11950.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
MSEQAYVAWLLGGGAAAEATAREDAAGAEAGAGGGSRSGMLKHGDIGYHT
ARRSPLSPDTSYMAEVGAWAVVQGCLDAYHQRRGAVSGGGGGGFGAKAAE
VPRVIALLSEAGPALLSGYEARIRAAST*
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mRNA from alignment at H-elongata_contig48094:1824..2658+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48094.11950.1 ID=mRNA_H-elongata_contig48094.11950.1|Name=mRNA_H-elongata_contig48094.11950.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=835bp|location=Sequence derived from alignment at H-elongata_contig48094:1824..2658+ (Himanthalia elongata Himel1 dioecious)
ATGTCGGAGCAGGCCTACGTGGCCTGGCTTCTGGGCGGCGGGGCGGCCGC
GGAGGCCACGGCTCGGGAGGACGCCGCAGGTGCCGAGGCGGGAGCAGGGG
GTGGAAGCCGCTCCGGCATGCTCAAGCATGGCGATATCGGATACCATACC
GCGAGGTAGGGCCGGGGAGGGGGGGGGGGCTGAGGGCTCACGCGATCAGA
TCAGATCCTGGCGTACGGGATTTGTGTGTTAATCAAAGCAGCTTCTGAGG
TTTTATGAGGGAGAGAGCTAATAGCACAGCAGGAGGCAAGTACTCGTACT
GCCTTCGATAAGAAGGGCATTATCAACCAGGCATAGTGTTTTTTGTTTTG
TTTTGTTTTTTTGTGTGTGTGGTCTTACGCTAGAGTTGAAACACAATAGA
TAGGTGACGGAGGCACATAGAAAATTGTTTGTTGGTTTGTTTTAGTTTTG
CATAGAAAAAAGGAGGGCGTGTTTGTTCGTTCCTCACACATTCTGGAGTT
TAATACCCCATTAGGTTACGACATGCGTTTAACACAACCCCCCCCCGCCT
CCGTCCCCGCTAATCAACGGCAAAAAAATGCGTACAAACGGACGGAACGG
AAGAAGATCGCCCTTGTCTCCCGACACGAGCTACATGGCCGAGGTCGGGG
CCTGGGCAGTGGTGCAAGGGTGTCTGGATGCGTACCACCAACGACGCGGC
GCAGTCAGCGGTGGGGGCGGCGGCGGTTTCGGAGCGAAGGCGGCGGAAGT
GCCGAGAGTGATCGCTCTACTCTCCGAGGCCGGACCGGCCCTGCTGTCCG
GTTACGAGGCCAGGATCCGCGCTGCTAGCACTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig48094:1824..2658+

>mRNA_H-elongata_contig48094.11950.1 ID=mRNA_H-elongata_contig48094.11950.1|Name=mRNA_H-elongata_contig48094.11950.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig48094:1824..2658+ (Himanthalia elongata Himel1 dioecious)
ATGTCGGAGCAGGCCTACGTGGCCTGGCTTCTGGGCGGCGGGGCGGCCGC
GGAGGCCACGGCTCGGGAGGACGCCGCAGGTGCCGAGGCGGGAGCAGGGG
GTGGAAGCCGCTCCGGCATGCTCAAGCATGGCGATATCGGATACCATACC
GCGAGATGTCGGAGCAGGCCTACGTGGCCTGGCTTCTGGGCGGCGGGGCG
GCCGCGGAGGCCACGGCTCGGGAGGACGCCGCAGGTGCCGAGGCGGGAGC
AGGGGGTGGAAGCCGCTCCGGCATGCTCAAGCATGGCGATATCGGATACC
ATACCGCGAGAAGATCGCCCTTGTCTCCCGACACGAGCTACATGGCCGAG
GTCGGGGCCTGGGCAGTGGTGCAAGGGTGTCTGGATGCGTACCACCAACG
ACGCGGCGCAGTCAGCGGTGGGGGCGGCGGCGGTTTCGGAGCGAAGGCGG
CGGAAGTGCCGAGAGTGATCGCTCTACTCTCCGAGGCCGGACCGGCCCTG
CTGTCCGGTTACGAGGCCAGGATCCGCGCTGCTAGCACTTAGAAGATCGC
CCTTGTCTCCCGACACGAGCTACATGGCCGAGGTCGGGGCCTGGGCAGTG
GTGCAAGGGTGTCTGGATGCGTACCACCAACGACGCGGCGCAGTCAGCGG
TGGGGGCGGCGGCGGTTTCGGAGCGAAGGCGGCGGAAGTGCCGAGAGTGA
TCGCTCTACTCTCCGAGGCCGGACCGGCCCTGCTGTCCGGTTACGAGGCC
AGGATCCGCGCTGCTAGCACTTAG
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