mRNA_H-elongata_contig48078.11947.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48078.11947.1
Unique NamemRNA_H-elongata_contig48078.11947.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig48078.11947.1 vs. uniprot
Match: D7FLA9_ECTSI (Gamma tubulin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLA9_ECTSI)

HSP 1 Score: 499 bits (1284), Expect = 5.820e-173
Identity = 256/280 (91.43%), Postives = 259/280 (92.50%), Query Frame = 1 
Query:   16 VGSEFWKQLCAEHGISADGTLQEYASGGDDSKDVFFYQADDDHYIPRALLLDLEPRVINMIQSNDYRHLFNPENVFVSKASERAATHLLISLEGGGAGNNWASGYRQAEDQHDYLMDMIDREADGSDSLEGFVLSHSIAGGTGSGMGSYLLERLNDRFPKKLIQTYSVFPNATQSQSDVVVQPYNSILTLKRLTLNADAVVVLDNTALNRIAVDRLRIHNPTVGQLNSIVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDTQ 855
            +GSEFWKQLCAEHGIS DGTLQE+AS GDD KDVFFYQADDDHYIPRALLLDLEPRVINMIQS  YR LFNPENVFVSK             EGGGAGNNWASGYRQAE+QHDYLMDMIDREADGSDSLEGFVLSHSIAGGTGSGMGSYLLERLND FPKKLIQTYSVFPNATQSQSDVVVQPYNSILTLKRLTLNADAVVVLDNTALNRIAVDRLRI NPTVGQLNSIVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDTQ
Sbjct:  115 IGSEFWKQLCAEHGISPDGTLQEFASHGDDRKDVFFYQADDDHYIPRALLLDLEPRVINMIQSEGYRDLFNPENVFVSK-------------EGGGAGNNWASGYRQAEEQHDYLMDMIDREADGSDSLEGFVLSHSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPNATQSQSDVVVQPYNSILTLKRLTLNADAVVVLDNTALNRIAVDRLRIPNPTVGQLNSIVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDTQ 381
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BLAST of mRNA_H-elongata_contig48078.11947.1 vs. uniprot
Match: A0A835Z905_9STRA (Tubulin gamma chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z905_9STRA)

HSP 1 Score: 462 bits (1188), Expect = 1.950e-159
Identity = 241/302 (79.80%), Postives = 256/302 (84.77%), Query Frame = 1 
Query:   16 VGSEFWKQLCAEHGISADGTLQEYASGGDDSK----------------DVFFYQADDDHYIPRALLLDLEPRVINMIQSNDYRHLFNPENVFVSKASERAATHLLISLEGGGAGNNWASGYRQA------EDQHDYLMDMIDREADGSDSLEGFVLSHSIAGGTGSGMGSYLLERLNDRFPKKLIQTYSVFPNATQSQSDVVVQPYNSILTLKRLTLNADAVVVLDNTALNRIAVDRLRIHNPTVGQLNSIVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDTQ 855
            +GSEFWKQLCAEHGISADG LQ+YAS GDD K                DVFFYQADD+HYIPRALLLDLEPRVIN I+S+ +R L+NPEN++VSK             EGGGAGNNWASGYRQA      E+QHDYLM+MIDREADGSDSLEGFVL+HSIAGGTGSGMGS+LLERLND FPKKLIQTYSVFPN TQSQSDVVVQPYNSILTLKRLTLNAD VVVLDNTALNRIAVDRLR+ NPTVGQLNSIVSTVMAASTTTLRYPGYMNNDL+GLVASLIPTPRCHFLMTGYTPLVISD Q
Sbjct:   17 IGSEFWKQLCAEHGISADGILQDYASQGDDRKASSCHAFCPCMCHAQQDVFFYQADDEHYIPRALLLDLEPRVINKIRSDGFRDLYNPENIYVSK-------------EGGGAGNNWASGYRQAANFIQSEEQHDYLMEMIDREADGSDSLEGFVLTHSIAGGTGSGMGSFLLERLNDHFPKKLIQTYSVFPNWTQSQSDVVVQPYNSILTLKRLTLNADCVVVLDNTALNRIAVDRLRLENPTVGQLNSIVSTVMAASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTPLVISDAQ 305
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BLAST of mRNA_H-elongata_contig48078.11947.1 vs. uniprot
Match: A0A6H5JLW7_9PHAE (Tubulin gamma chain n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW7_9PHAE)

HSP 1 Score: 449 bits (1156), Expect = 3.200e-156
Identity = 233/253 (92.09%), Postives = 234/253 (92.49%), Query Frame = 1 
Query:   97 GDDSKDVFFYQADDDHYIPRALLLDLEPRVINMIQSNDYRHLFNPENVFVSKASERAATHLLISLEGGGAGNNWASGYRQAEDQHDYLMDMIDREADGSDSLEGFVLSHSIAGGTGSGMGSYLLERLNDRFPKKLIQTYSVFPNATQSQSDVVVQPYNSILTLKRLTLNADAVVVLDNTALNRIAVDRLRIHNPTVGQLNSIVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDTQ 855
            GDD KDVFFYQADDDHYIPRALLLDLEPRVINMIQS  YR LFNPENVFVSK             EGGGAGNNWASGYRQAE+QHDYLMDMIDREADGSDSLEGFVLSHSIAGGTGSGMGSYLLERLND FPKKLIQTYSVFPNATQSQSDVVVQPYNSILTLKRLTLNADAVVVLDNTALNRIAVDRLRI NPTVGQLNSIVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDTQ
Sbjct:   12 GDDRKDVFFYQADDDHYIPRALLLDLEPRVINMIQSEGYRDLFNPENVFVSK-------------EGGGAGNNWASGYRQAEEQHDYLMDMIDREADGSDSLEGFVLSHSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPNATQSQSDVVVQPYNSILTLKRLTLNADAVVVLDNTALNRIAVDRLRIPNPTVGQLNSIVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDTQ 251
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BLAST of mRNA_H-elongata_contig48078.11947.1 vs. uniprot
Match: A0A5D6XYE4_9STRA (Tubulin gamma chain n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYE4_9STRA)

HSP 1 Score: 443 bits (1139), Expect = 1.030e-152
Identity = 222/276 (80.43%), Postives = 239/276 (86.59%), Query Frame = 1 
Query:   16 VGSEFWKQLCAEHGISADGTLQEYASGGDDSKDVFFYQADDDHYIPRALLLDLEPRVINMIQSNDYRHLFNPENVFVSKASERAATHLLISLEGGGAGNNWASGYRQAEDQHDYLMDMIDREADGSDSLEGFVLSHSIAGGTGSGMGSYLLERLNDRFPKKLIQTYSVFPNATQSQSDVVVQPYNSILTLKRLTLNADAVVVLDNTALNRIAVDRLRIHNPTVGQLNSIVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVI 843
            VG+EFWKQLCAEHGISADG + ++ASGG D KDVFFYQADD+HY+PRALLLDLEPRVIN I ++ YR+L+NPEN F SK             +GGGAGNNWASGY Q +  HD LMDMIDREADGSDSLEGFVL HSIAGGTGSGMGSYLLE+LND FPKKL+QTYSVFPN T  QSDVVVQPYNS+LTLKRL LNAD VVVLDNTALNRIA+DRLRI NPTV QLNS+VSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPL I
Sbjct:   17 VGAEFWKQLCAEHGISADGLVADFASGGHDRKDVFFYQADDEHYVPRALLLDLEPRVINSILNSGYRNLYNPENFFTSK-------------DGGGAGNNWASGYAQGDQHHDVLMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEQLNDHFPKKLVQTYSVFPNQTDLQSDVVVQPYNSVLTLKRLVLNADCVVVLDNTALNRIAMDRLRIENPTVAQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLTI 279
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BLAST of mRNA_H-elongata_contig48078.11947.1 vs. uniprot
Match: A0A2D4CHG2_PYTIN (Tubulin gamma chain n=3 Tax=Pythium TaxID=4797 RepID=A0A2D4CHG2_PYTIN)

HSP 1 Score: 439 bits (1130), Expect = 4.540e-151
Identity = 222/276 (80.43%), Postives = 239/276 (86.59%), Query Frame = 1 
Query:   16 VGSEFWKQLCAEHGISADGTLQEYASGGDDSKDVFFYQADDDHYIPRALLLDLEPRVINMIQSNDYRHLFNPENVFVSKASERAATHLLISLEGGGAGNNWASGYRQAEDQHDYLMDMIDREADGSDSLEGFVLSHSIAGGTGSGMGSYLLERLNDRFPKKLIQTYSVFPNATQSQSDVVVQPYNSILTLKRLTLNADAVVVLDNTALNRIAVDRLRIHNPTVGQLNSIVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVI 843
            VG EFWKQLCAEHGIS DG + +YA+ G D KDVFFYQADD+HYIPRALL+DLEPRV+NMIQ++ YR+L+NPEN FVSK             EGGGAGNNWASGY Q E  +D LM+MIDREADGSDSLEGFVL HSIAGGTGSGMGS+LLE LND FPKKLIQTYSVFPN +  QSDVVVQPYNS+LTLKRLTLNAD VVVLDNTALNRIAVDRLRI NP+V QLNS+VSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPL I
Sbjct:   17 VGMEFWKQLCAEHGISPDGIVHDYATQGHDRKDVFFYQADDEHYIPRALLMDLEPRVVNMIQNSAYRNLYNPENYFVSK-------------EGGGAGNNWASGYHQGEKHNDLLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSFLLENLNDHFPKKLIQTYSVFPNMSDFQSDVVVQPYNSVLTLKRLTLNADCVVVLDNTALNRIAVDRLRIDNPSVSQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLTI 279
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BLAST of mRNA_H-elongata_contig48078.11947.1 vs. uniprot
Match: A0A024TYX1_9STRA (Tubulin gamma chain n=13 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TYX1_9STRA)

HSP 1 Score: 439 bits (1128), Expect = 4.820e-151
Identity = 219/276 (79.35%), Postives = 237/276 (85.87%), Query Frame = 1 
Query:   16 VGSEFWKQLCAEHGISADGTLQEYASGGDDSKDVFFYQADDDHYIPRALLLDLEPRVINMIQSNDYRHLFNPENVFVSKASERAATHLLISLEGGGAGNNWASGYRQAEDQHDYLMDMIDREADGSDSLEGFVLSHSIAGGTGSGMGSYLLERLNDRFPKKLIQTYSVFPNATQSQSDVVVQPYNSILTLKRLTLNADAVVVLDNTALNRIAVDRLRIHNPTVGQLNSIVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVI 843
            +GSEFWKQLC EHGIS DG +Q+YA+ G+D KDVFFYQADD+HYIPRALL+DLEPRVIN I ++ YR+L+NPEN F++K             +GGGAGNNWASGY Q E  HD LM+MIDREADGSDSLEGFVL HSIAGGTGSGMGSYLLE LND FPKKLIQTYSVFPN    QSDVVVQPYNS+LTLKRL LN+D VVVLDNTALNRIAVDRLRI NPTV QLNS+VSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPL I
Sbjct:   17 IGSEFWKQLCVEHGISPDGIVQDYATQGNDRKDVFFYQADDEHYIPRALLMDLEPRVINSIMNSSYRNLYNPENTFIAK-------------DGGGAGNNWASGYNQGEQHHDLLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLENLNDHFPKKLIQTYSVFPNQDDFQSDVVVQPYNSLLTLKRLVLNSDCVVVLDNTALNRIAVDRLRIDNPTVSQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLTI 279
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BLAST of mRNA_H-elongata_contig48078.11947.1 vs. uniprot
Match: F0WMZ0_9STRA (Tubulin gamma chain n=2 Tax=Albugo TaxID=65356 RepID=F0WMZ0_9STRA)

HSP 1 Score: 439 bits (1128), Expect = 7.470e-151
Identity = 223/280 (79.64%), Postives = 239/280 (85.36%), Query Frame = 1 
Query:   16 VGSEFWKQLCAEHGISADGTLQEYASGGDDSKDVFFYQADDDHYIPRALLLDLEPRVINMIQSNDYRHLFNPENVFVSKASERAATHLLISLEGGGAGNNWASGYRQAEDQHDYLMDMIDREADGSDSLEGFVLSHSIAGGTGSGMGSYLLERLNDRFPKKLIQTYSVFPNATQSQSDVVVQPYNSILTLKRLTLNADAVVVLDNTALNRIAVDRLRIHNPTVGQLNSIVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDTQ 855
            +G EFWKQLC EHGIS DG + +YA+ G D KDVFFYQADD+HYIPRALL+DLEPRVIN I ++ Y++L+NPEN F+SK             EGGGAGNNWASGY Q E QHD LM+MIDREADGSDSLEGFVL HSIAGGTGSGMGSYLLE LND FPKKLIQTYSVFPN T  QSDVVVQPYNS+LTLKRL LNAD VVVLDNTALNRIAVDRLRI NPTV QLNS+VSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPL I +TQ
Sbjct:   17 IGMEFWKQLCVEHGISPDGIVHDYATQGHDRKDVFFYQADDEHYIPRALLMDLEPRVINSILNSTYKNLYNPENFFMSK-------------EGGGAGNNWASGYHQGEQQHDLLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLENLNDHFPKKLIQTYSVFPNQTDFQSDVVVQPYNSLLTLKRLVLNADCVVVLDNTALNRIAVDRLRIDNPTVAQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLTI-ETQ 282
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BLAST of mRNA_H-elongata_contig48078.11947.1 vs. uniprot
Match: A0A7R9U0J6_9STRA (Tubulin gamma chain (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0J6_9STRA)

HSP 1 Score: 434 bits (1117), Expect = 5.230e-150
Identity = 217/281 (77.22%), Postives = 245/281 (87.19%), Query Frame = 1 
Query:   16 VGSEFWKQLCAEHGISADGTLQEYASGGDDSKDVFFYQADDDHYIPRALLLDLEPRVINMIQSNDYRHLFNPENVFVSKASERAATHLLISLEGGGAGNNWASGYRQAEDQHDYLMDMIDREADGSDSLEGFVLSHSIAGGTGSGMGSYLLERLNDRFPKKLIQTYSVFPNATQ-SQSDVVVQPYNSILTLKRLTLNADAVVVLDNTALNRIAVDRLRIHNPTVGQLNSIVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDTQ 855
            +G EFW+QLCAEHGI+ DG L+++A  G+D KDVFFYQADDDHYIPRA+L+DLEPRV+N+IQ+ DYR+L+NPEN F +K             EGGGAGNNWA+G+RQ  + HD +++MIDREAD SDSLEGFVL HSIAGGTGSGMGSYLLE+LND FPKKLIQTYSVFPN T  SQSDVVVQPYNSILT+KRL LNADAVVVLDNTALNRIAVDRLRI NPTVGQLNS+VSTVMAA+TTTLRYPGYMNNDL+GLVASLIPTPR HFLMTGYTPLV++D Q
Sbjct:   29 IGFEFWRQLCAEHGINPDGILEDFAFDGNDRKDVFFYQADDDHYIPRAVLMDLEPRVLNVIQNGDYRNLYNPENYFCAK-------------EGGGAGNNWAAGHRQGAEHHDQVLEMIDREADNSDSLEGFVLCHSIAGGTGSGMGSYLLEQLNDHFPKKLIQTYSVFPNWTSDSQSDVVVQPYNSILTMKRLVLNADAVVVLDNTALNRIAVDRLRIPNPTVGQLNSLVSTVMAATTTTLRYPGYMNNDLVGLVASLIPTPRAHFLMTGYTPLVLNDAQ 296
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BLAST of mRNA_H-elongata_contig48078.11947.1 vs. uniprot
Match: M4BVJ5_HYAAE (Tubulin gamma chain n=27 Tax=Oomycota TaxID=4762 RepID=M4BVJ5_HYAAE)

HSP 1 Score: 436 bits (1121), Expect = 8.340e-150
Identity = 217/276 (78.62%), Postives = 238/276 (86.23%), Query Frame = 1 
Query:   16 VGSEFWKQLCAEHGISADGTLQEYASGGDDSKDVFFYQADDDHYIPRALLLDLEPRVINMIQSNDYRHLFNPENVFVSKASERAATHLLISLEGGGAGNNWASGYRQAEDQHDYLMDMIDREADGSDSLEGFVLSHSIAGGTGSGMGSYLLERLNDRFPKKLIQTYSVFPNATQSQSDVVVQPYNSILTLKRLTLNADAVVVLDNTALNRIAVDRLRIHNPTVGQLNSIVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVI 843
            +G EFWKQLC EHGISADG +Q++A+ G D KDVFFYQADD+HYIPRALL+DLEPRVIN I ++ +++L+NPEN FVSK             EGGGAGNNWASGY Q E  HD LM+MIDREADGSDSLEGFVL HSIAGGTGSGMGSYLLE LND FPKKLIQTYSVFPN +  QSDVVVQPYNS+LT+KRL LNAD+VVVLDNTALNRIAV+RLR+ NPTV QLNS+VSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPL I
Sbjct:   17 IGMEFWKQLCVEHGISADGIVQDFATSGHDRKDVFFYQADDEHYIPRALLMDLEPRVINSISTSAFKNLYNPENFFVSK-------------EGGGAGNNWASGYHQGESHHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLENLNDHFPKKLIQTYSVFPNQSDFQSDVVVQPYNSLLTMKRLVLNADSVVVLDNTALNRIAVERLRVENPTVSQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLTI 279
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BLAST of mRNA_H-elongata_contig48078.11947.1 vs. uniprot
Match: A0A5A8EAZ2_CAFRO (Tubulin gamma chain n=2 Tax=Sar TaxID=2698737 RepID=A0A5A8EAZ2_CAFRO)

HSP 1 Score: 433 bits (1113), Expect = 1.310e-147
Identity = 217/279 (77.78%), Postives = 238/279 (85.30%), Query Frame = 1 
Query:   16 VGSEFWKQLCAEHGISADGTLQEYASGGDDSKDVFFYQADDDHYIPRALLLDLEPRVINMIQSNDYRHLFNPENVFVSKASERAATHLLISLEGGGAGNNWASGYRQAEDQHDYLMDMIDREADGSDSLEGFVLSHSIAGGTGSGMGSYLLERLNDRFPKKLIQTYSVFPNATQSQSDVVVQPYNSILTLKRLTLNADAVVVLDNTALNRIAVDRLRIHNPTVGQLNSIVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDT 852
            +G EFWKQLCAEHGIS DG L+EYA+ G D KDVFFYQADD+H+IPRALLLDLEPRV+N I+S+ Y++L+NPEN +VS              EGGGAGNNWASGY QA   HD LMDMIDREADGSDSLEGFV++HSIAGGTGSGMGSYLLE+LND FPKKLIQTYSVFPN  QSQSDVVV PYNSILTLKRLTLNAD VVV+DNTALN IA DRLR+  PTV QLNS+VSTVMAASTTTLRYPGYMNNDL+GLVASL+PTPRCHFLMTGYTPL +  T
Sbjct:   17 IGMEFWKQLCAEHGISPDGILEEYATHGTDRKDVFFYQADDEHFIPRALLLDLEPRVVNSIRSSSYKNLYNPENYYVSS-------------EGGGAGNNWASGYHQASLVHDTLMDMIDREADGSDSLEGFVVTHSIAGGTGSGMGSYLLEQLNDHFPKKLIQTYSVFPNQNQSQSDVVVGPYNSILTLKRLTLNADCVVVVDNTALNSIAADRLRVRAPTVAQLNSLVSTVMAASTTTLRYPGYMNNDLVGLVASLVPTPRCHFLMTGYTPLSLGGT 282
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48078.11947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLA9_ECTSI5.820e-17391.43Gamma tubulin n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A835Z905_9STRA1.950e-15979.80Tubulin gamma chain n=1 Tax=Tribonema minus TaxID=... [more]
A0A6H5JLW7_9PHAE3.200e-15692.09Tubulin gamma chain n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A5D6XYE4_9STRA1.030e-15280.43Tubulin gamma chain n=1 Tax=Pythium brassicum TaxI... [more]
A0A2D4CHG2_PYTIN4.540e-15180.43Tubulin gamma chain n=3 Tax=Pythium TaxID=4797 Rep... [more]
A0A024TYX1_9STRA4.820e-15179.35Tubulin gamma chain n=13 Tax=Saprolegniaceae TaxID... [more]
F0WMZ0_9STRA7.470e-15179.64Tubulin gamma chain n=2 Tax=Albugo TaxID=65356 Rep... [more]
A0A7R9U0J6_9STRA5.230e-15077.22Tubulin gamma chain (Fragment) n=1 Tax=Pinguiococc... [more]
M4BVJ5_HYAAE8.340e-15078.62Tubulin gamma chain n=27 Tax=Oomycota TaxID=4762 R... [more]
A0A5A8EAZ2_CAFRO1.310e-14777.78Tubulin gamma chain n=2 Tax=Sar TaxID=2698737 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48078contigH-elongata_contig48078:333..3789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score499.6
Seed ortholog evalue9.7e-139
Seed eggNOG ortholog2880.D7FLA9
Preferred nameTUBG1
KEGG rclassRC00099
KEGG koko:K10389,ko:K15303
KEGG ReactionR09412,R09413,R09414,R09415
KEGG Pathwayko00980,ko05165,map00980,map05165
GOsGO:0000003,GO:0000022,GO:0000070,GO:0000075,GO:0000086,GO:0000166,GO:0000212,GO:0000226,GO:0000228,GO:0000242,GO:0000278,GO:0000280,GO:0000281,GO:0000793,GO:0000794,GO:0000819,GO:0000902,GO:0000904,GO:0000910,GO:0000911,GO:0000922,GO:0000923,GO:0000928,GO:0000930,GO:0000931,GO:0001882,GO:0001883,GO:0003002,GO:0003006,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005637,GO:0005694,GO:0005737,GO:0005739,GO:0005768,GO:0005813,GO:0005814,GO:0005815,GO:0005816,GO:0005819,GO:0005822,GO:0005824,GO:0005825,GO:0005827,GO:0005829,GO:0005856,GO:0005874,GO:0005876,GO:0005881,GO:0005886,GO:0005929,GO:0005938,GO:0006417,GO:0006810,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0007056,GO:0007057,GO:0007059,GO:0007088,GO:0007093,GO:0007097,GO:0007098,GO:0007105,GO:0007127,GO:0007143,GO:0007144,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007310,GO:0007312,GO:0007346,GO:0007389,GO:0008150,GO:0008274,GO:0008275,GO:0008608,GO:0009266,GO:0009581,GO:0009582,GO:0009605,GO:0009607,GO:0009624,GO:0009628,GO:0009653,GO:0009791,GO:0009794,GO:0009798,GO:0009826,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009932,GO:0009950,GO:0009953,GO:0009987,GO:0009994,GO:0010015,GO:0010016,GO:0010053,GO:0010054,GO:0010103,GO:0010374,GO:0010389,GO:0010457,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010608,GO:0010628,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0016048,GO:0016049,GO:0017076,GO:0019001,GO:0019222,GO:0019866,GO:0019953,GO:0021700,GO:0022402,GO:0022406,GO:0022412,GO:0022414,GO:0022607,GO:0022622,GO:0030030,GO:0030031,GO:0030154,GO:0030312,GO:0031021,GO:0031023,GO:0031090,GO:0031109,GO:0031122,GO:0031252,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031410,GO:0031592,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0032153,GO:0032155,GO:0032268,GO:0032270,GO:0032465,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032954,GO:0032989,GO:0032991,GO:0033043,GO:0034248,GO:0034250,GO:0034622,GO:0035639,GO:0036064,GO:0036094,GO:0040007,GO:0042802,GO:0042995,GO:0043167,GO:0043168,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044732,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0045132,GO:0045177,GO:0045727,GO:0045786,GO:0045930,GO:0045995,GO:0046785,GO:0046907,GO:0048285,GO:0048364,GO:0048366,GO:0048367,GO:0048468,GO:0048469,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048588,GO:0048589,GO:0048599,GO:0048609,GO:0048731,GO:0048764,GO:0048765,GO:0048767,GO:0048768,GO:0048827,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051173,GO:0051179,GO:0051225,GO:0051231,GO:0051234,GO:0051235,GO:0051239,GO:0051246,GO:0051247,GO:0051255,GO:0051256,GO:0051258,GO:0051276,GO:0051301,GO:0051302,GO:0051304,GO:0051306,GO:0051316,GO:0051321,GO:0051417,GO:0051418,GO:0051606,GO:0051640,GO:0051641,GO:0051642,GO:0051647,GO:0051649,GO:0051651,GO:0051656,GO:0051657,GO:0051661,GO:0051663,GO:0051704,GO:0051707,GO:0051726,GO:0051783,GO:0055037,GO:0060255,GO:0060271,GO:0060560,GO:0061496,GO:0061497,GO:0061499,GO:0061640,GO:0061842,GO:0061982,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070925,GO:0071695,GO:0071840,GO:0071944,GO:0071957,GO:0072687,GO:0080090,GO:0080147,GO:0090306,GO:0090307,GO:0090558,GO:0090626,GO:0090627,GO:0090698,GO:0097159,GO:0097367,GO:0097435,GO:0097708,GO:0097711,GO:0097730,GO:0098813,GO:0099080,GO:0099081,GO:0099402,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140013,GO:0140014,GO:0140056,GO:1901265,GO:1901363,GO:1901987,GO:1901990,GO:1902408,GO:1902410,GO:1902412,GO:1902749,GO:1902850,GO:1903046,GO:1903047,GO:1903436,GO:1905392,GO:2000026,GO:2000112,GO:2000765,GO:2000767
EggNOG free text desc.microtubule nucleation
EggNOG OGsCOG5023@1,KOG1374@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons6
Model size855
Cds size855
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48078.11947.1prot_H-elongata_contig48078.11947.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48078 333..3789 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930793.0229366-CDS-H-elongata_contig48078:332..5361622930793.0229366-CDS-H-elongata_contig48078:332..536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48078 333..536 -
1691679572.690245-CDS-H-elongata_contig48078:332..5361691679572.690245-CDS-H-elongata_contig48078:332..536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48078 333..536 -
1622930793.0392127-CDS-H-elongata_contig48078:884..9981622930793.0392127-CDS-H-elongata_contig48078:884..998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48078 885..998 -
1691679572.7054386-CDS-H-elongata_contig48078:884..9981691679572.7054386-CDS-H-elongata_contig48078:884..998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48078 885..998 -
1622930793.0538876-CDS-H-elongata_contig48078:1602..17341622930793.0538876-CDS-H-elongata_contig48078:1602..1734Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48078 1603..1734 -
1691679572.7160382-CDS-H-elongata_contig48078:1602..17341691679572.7160382-CDS-H-elongata_contig48078:1602..1734Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48078 1603..1734 -
1622930793.0690525-CDS-H-elongata_contig48078:1888..20021622930793.0690525-CDS-H-elongata_contig48078:1888..2002Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48078 1889..2002 -
1691679572.7259257-CDS-H-elongata_contig48078:1888..20021691679572.7259257-CDS-H-elongata_contig48078:1888..2002Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48078 1889..2002 -
1622930793.0817585-CDS-H-elongata_contig48078:2723..29181622930793.0817585-CDS-H-elongata_contig48078:2723..2918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48078 2724..2918 -
1691679572.736634-CDS-H-elongata_contig48078:2723..29181691679572.736634-CDS-H-elongata_contig48078:2723..2918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48078 2724..2918 -
1622930793.1103325-CDS-H-elongata_contig48078:3693..37891622930793.1103325-CDS-H-elongata_contig48078:3693..3789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48078 3694..3789 -
1691679572.746815-CDS-H-elongata_contig48078:3693..37891691679572.746815-CDS-H-elongata_contig48078:3693..3789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48078 3694..3789 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48078.11947.1

>prot_H-elongata_contig48078.11947.1 ID=prot_H-elongata_contig48078.11947.1|Name=mRNA_H-elongata_contig48078.11947.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=285bp
MPHDTVGSEFWKQLCAEHGISADGTLQEYASGGDDSKDVFFYQADDDHYI
PRALLLDLEPRVINMIQSNDYRHLFNPENVFVSKASERAATHLLISLEGG
GAGNNWASGYRQAEDQHDYLMDMIDREADGSDSLEGFVLSHSIAGGTGSG
MGSYLLERLNDRFPKKLIQTYSVFPNATQSQSDVVVQPYNSILTLKRLTL
NADAVVVLDNTALNRIAVDRLRIHNPTVGQLNSIVSTVMAASTTTLRYPG
YMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDTQ
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mRNA from alignment at H-elongata_contig48078:333..3789-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48078.11947.1 ID=mRNA_H-elongata_contig48078.11947.1|Name=mRNA_H-elongata_contig48078.11947.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3457bp|location=Sequence derived from alignment at H-elongata_contig48078:333..3789- (Himanthalia elongata Himel1 dioecious)
ATGCCGCACGACACAGTTGGGAGCGAGTTCTGGAAGCAGCTCTGTGCGGA
GCATGGCATCAGTGCCGATGGAACACTTCAGGAATACGCCTCCGGGGTTA
GTGTTAGACGAGTACTGCCCCCCAAACATGAACTTCCGAACTACTTGATC
CAGAAGGAGCAAATGCTCGTAACCGAAATGCTTTCTTCTTGGCTCTACCT
TGGACTGGCGCTAAGGTTTGGGTTAAGGTTAGGGTTAACAATAATACAAA
GCCTCAATCCTGTCGCATCTCCGACGGTGCTTGATCCTGTGAACCAGGTA
CTGGTACTGTAGTGTAGTGGTAGCTAGAACGATTTCGCGACACGGCAGCA
GTTTTTTATACAATTATTCTCTACAAGTCACACGCAGTGTCACGTTCGAA
TCTTGAGAGCTTCATTTTAACCCACTACTAGGCTCGTTCCCCCAATTAGT
CTAGTGGGTAATCACGTAAGCCTGTTTGGGCGAAAATCGATAGTTTCCAA
GATTGGCTCTCTATTGACAGTATAAAACGTGAAAACGGGAGTAAGCAAGG
TTCGACCATTGGTTGACGAGGTTGAGGGTTTCGTATCGTAGGCAAGATGG
GGGCGTTCTTCAGCCGGGGCGAGATGGGTAGGCGGGATGGATGGGCAATG
TTGTAGTAGGTAGGATTGATACTAATTATTATTAGACTATAGTAGTATTC
ATAGCACGTTCTTGGAGAGTACCGGTATAGGCTAGAGCTACATGACCTAC
CGGTATCCCATCGATACGGTACGGTATGATACGATACGTAGACAGTTTAT
TCGAACAGAACAGTCTATTAAATTGAGTGAGACCGTGAAACCGTTGCTTG
GTCGGTTTGCCTTTCTCGCAGGGAGACGACAGCAAGGACGTGTTCTTCTA
CCAGGCCGACGATGACCATTACATTCCTAGGGCGCTGCTGCTCGACCTCG
AACCGAGGGTGATCAACATGATCCAGAGCAATGACTATCGCCACCTCTTC
AACCCAGAAAATGTCTTCGTCAGCAAGGCGAGCGAGCGAGCGGCGACCCA
CCTCTTGATTTCTCTAGTTGTGAACTAGGAATGAGGTTGTTTATGAGGTT
GTTTAAGCAACGCGAATAGGATAGTCTAATCCAACATCTTCAGGGATAGC
TCCCCATAAAGGGAGGGGTATTTACGATCCGGTGTGTCGCCCCCTTACGT
GTCATGTCGCTTTGAGCGGTAGAATAGTCGAATAGTCTAATAGTCTAATA
CAAATTGATAGAAAGGGGTGGGATTGTACGTGAAAGTTTTTGGGGTAAGG
CGAAAATGGCTAGTCAACATTGAAATATGGCTTTGGCTATCTTGCCTCTA
GGTATTATAGATCGTACACACGACGGTAGCAGCTCTATACGAGTTGGTTG
CTAGCTCCTATTAATATTAATATTAATATATGCAGGAGCTCAGGGTATTA
TAAATAACAAAAGCGTTAATAAATCTCTGCTTTGGTTTTTCACACAGCAG
AGTTTGGTATAGTATAGTATAGTATTATGAATGGTGGACGGCTCAAGCCA
CTTGGACACCTTATACAGTACCTTATACTTCAGTACTCTAGATACTAGAT
AAAAGTTCTGCAGATGTATTAATAGCTGGTCCGTTTGTACCCTAACCATA
GTGTCCTTCATAGCTTCATAGTGTATCACCAAGGATGGGATGGGATGGGA
TGCTGCAGTGAAGCTATTATTACCAAGGCGGCTTGCGTTATCTCCTTGGA
ACATGGTTAGGCTCACTAACTCTAACTCTAACTTCAGGAGGGAGGAGGTG
CCGGAAATAACTGGGCTAGCGGCTACAGACAGGCAGAGGATCAACACGAC
TACCTCATGGACATGATTGACAGAGAAGCGGATGGAAGCGACAGTCTCGA
GGTATGCTGTAGTGTGGGGGGTGTAAACACACCATCCCTTATCCGCACCA
CACACGCCATGACAGCAGTAGGGTTATATTGATTATAGTATGGTTCTAAG
CTACGAGAGGGTGATCGGTTACGTTATTGTACTATTATACTGTTCTATTC
TGCAGGGCTTCGTACTGTCTCACTCCATCGCTGGAGGTACCGGCTCGGGC
ATGGGCTCGTATCTGCTGGAGCGACTGAACGACCGCTTCCCAAAGAAGCT
CATCCAGACGTACTCCGTCTTCCCGAACGCCACCCAGGTCAGAGAGTAAC
GCTTGATCTATTAATAGAACATTGACTACATTGATTACATGATTACATTG
ACTACATTGACATCACTATTGCCGCGGGGGGCGGATCATACCGGTATAAG
TATTATTAATATTGAATAGTATATATTAATATCACGCTATGACAGTGGAT
ATTAATATGACGCTATGATGGTGGATTTTAATAGATGAACCGCCGGGGCA
AATCGACTCATTATACCATTATACAATCATACCCCCACATGGCAAAACTT
ATTCAGTTTTGGCTTTTCGATTGTTTTTTTGACTCATGCCTCGCGATTTA
AAATACCGTACGATGCCCTAACCCTTGAATCATCTTGCTTTGATGTCATC
ACCCTCTGACCTCTGACCTCTGACCTTGGATGGGTGATGGATGATGGGTG
ATGCTGGATACTCTTGAAGCGAAAAACATTGAACTGCGATACACTTGGAC
TGATATTTGTGAAATATGAACTAATAGGGTTAGGGTTAGGGTTAATACTA
GTCTATACTTGTAACTGTTAATACGAACTACGAACTACTGTACCCTTACG
GTGCCCTTGATCGTATACTTGGCCGTACCCTTGCTGTGCAGAGCCAAAGC
GACGTGGTCGTCCAACCATACAACTCCATCCTCACCCTGAAACGACTCAC
ACTTAACGCCGACGCCGTAGTGGTACTGGACAACACGGCCCTCAACAGGA
TCGCGGTAGGGATAACACAACACGTCGAAAATGGTACCGTATGCAGTATA
CCGTATGCCGTATGCAGCATGCCGTATGCTTCATAGTAGGGACTGTGGTA
CTGATAAGTAATAAAGAAATTGCAGTGCGGCGAGCGGATTCACAACTACT
CACGCCTATACCGTACATGTGTACCCTAACTCTAACCCTAAACAGTACCT
GTGCCCTAAATGGATATCCAATGGAAATACTGTATATTAACCTCTAGCTT
AAGCTCTAGACTACATTTATAGTATAGAGTACCTTAACCGTTCATCTCTT
GCGGGTTGCTCTCTGCTCCTCTCCTCTCCTCTCCTCTCTTCTCCTCGCTT
TAGGTAGATCGTCTCCGCATTCACAATCCCACCGTGGGCCAGTTGAACTC
CATCGTCAGCACCGTCATGGCGGCGTCCACAACCACGCTGCGCTACCCCG
GCTACATGAACAACGACCTCATCGGGCTGGTAGCGTCGCTGATCCCCACC
CCTCGATGCCACTTCCTCATGACGGGCTACACCCCTCTAGTCATCAGCGA
CACCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig48078:333..3789-

>mRNA_H-elongata_contig48078.11947.1 ID=mRNA_H-elongata_contig48078.11947.1|Name=mRNA_H-elongata_contig48078.11947.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1710bp|location=Sequence derived from alignment at H-elongata_contig48078:333..3789- (Himanthalia elongata Himel1 dioecious)
ATGCCGCACGACACAGTTGGGAGCGAGTTCTGGAAGCAGCTCTGTGCGGA
GCATGGCATCAGTGCCGATGGAACACTTCAGGAATACGCCTCCGGGATGC
CGCACGACACAGTTGGGAGCGAGTTCTGGAAGCAGCTCTGTGCGGAGCAT
GGCATCAGTGCCGATGGAACACTTCAGGAATACGCCTCCGGGGGAGACGA
CAGCAAGGACGTGTTCTTCTACCAGGCCGACGATGACCATTACATTCCTA
GGGCGCTGCTGCTCGACCTCGAACCGAGGGTGATCAACATGATCCAGAGC
AATGACTATCGCCACCTCTTCAACCCAGAAAATGTCTTCGTCAGCAAGGC
GAGCGAGCGAGCGGCGACCCACCTCTTGATTTCTCTAGGAGACGACAGCA
AGGACGTGTTCTTCTACCAGGCCGACGATGACCATTACATTCCTAGGGCG
CTGCTGCTCGACCTCGAACCGAGGGTGATCAACATGATCCAGAGCAATGA
CTATCGCCACCTCTTCAACCCAGAAAATGTCTTCGTCAGCAAGGCGAGCG
AGCGAGCGGCGACCCACCTCTTGATTTCTCTAGAGGGAGGAGGTGCCGGA
AATAACTGGGCTAGCGGCTACAGACAGGCAGAGGATCAACACGACTACCT
CATGGACATGATTGACAGAGAAGCGGATGGAAGCGACAGTCTCGAGGAGG
GAGGAGGTGCCGGAAATAACTGGGCTAGCGGCTACAGACAGGCAGAGGAT
CAACACGACTACCTCATGGACATGATTGACAGAGAAGCGGATGGAAGCGA
CAGTCTCGAGGGCTTCGTACTGTCTCACTCCATCGCTGGAGGTACCGGCT
CGGGCATGGGCTCGTATCTGCTGGAGCGACTGAACGACCGCTTCCCAAAG
AAGCTCATCCAGACGTACTCCGTCTTCCCGAACGCCACCCAGGGCTTCGT
ACTGTCTCACTCCATCGCTGGAGGTACCGGCTCGGGCATGGGCTCGTATC
TGCTGGAGCGACTGAACGACCGCTTCCCAAAGAAGCTCATCCAGACGTAC
TCCGTCTTCCCGAACGCCACCCAGAGCCAAAGCGACGTGGTCGTCCAACC
ATACAACTCCATCCTCACCCTGAAACGACTCACACTTAACGCCGACGCCG
TAGTGGTACTGGACAACACGGCCCTCAACAGGATCGCGAGCCAAAGCGAC
GTGGTCGTCCAACCATACAACTCCATCCTCACCCTGAAACGACTCACACT
TAACGCCGACGCCGTAGTGGTACTGGACAACACGGCCCTCAACAGGATCG
CGGTAGATCGTCTCCGCATTCACAATCCCACCGTGGGCCAGTTGAACTCC
ATCGTCAGCACCGTCATGGCGGCGTCCACAACCACGCTGCGCTACCCCGG
CTACATGAACAACGACCTCATCGGGCTGGTAGCGTCGCTGATCCCCACCC
CTCGATGCCACTTCCTCATGACGGGCTACACCCCTCTAGTCATCAGCGAC
ACCCAGGTAGATCGTCTCCGCATTCACAATCCCACCGTGGGCCAGTTGAA
CTCCATCGTCAGCACCGTCATGGCGGCGTCCACAACCACGCTGCGCTACC
CCGGCTACATGAACAACGACCTCATCGGGCTGGTAGCGTCGCTGATCCCC
ACCCCTCGATGCCACTTCCTCATGACGGGCTACACCCCTCTAGTCATCAG
CGACACCCAG
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