mRNA_H-elongata_contig48045.11943.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48045.11943.1
Unique NamemRNA_H-elongata_contig48045.11943.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48045.11943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48045contigH-elongata_contig48045:1896..2409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size514
Cds size306
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930792.3616037-UTR-H-elongata_contig48045:1895..21031622930792.3616037-UTR-H-elongata_contig48045:1895..2103Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48045 1896..2103 +
1691679572.3857825-UTR-H-elongata_contig48045:1895..21031691679572.3857825-UTR-H-elongata_contig48045:1895..2103Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48045 1896..2103 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930792.3779485-CDS-H-elongata_contig48045:2103..24091622930792.3779485-CDS-H-elongata_contig48045:2103..2409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48045 2104..2409 +
1691679572.395413-CDS-H-elongata_contig48045:2103..24091691679572.395413-CDS-H-elongata_contig48045:2103..2409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48045 2104..2409 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48045.11943.1prot_H-elongata_contig48045.11943.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48045 2104..2409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48045.11943.1

>prot_H-elongata_contig48045.11943.1 ID=prot_H-elongata_contig48045.11943.1|Name=mRNA_H-elongata_contig48045.11943.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MFRVGKLRPILLMIFAAALTQKDNRERWSLFVSIALRLRFDRPLVPGAPL
LGHQRVPQNRSILRRRGTHGHHWSHRCCCAHLRRVPLPSQQPFVQVQTCH
GS
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mRNA from alignment at H-elongata_contig48045:1896..2409+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48045.11943.1 ID=mRNA_H-elongata_contig48045.11943.1|Name=mRNA_H-elongata_contig48045.11943.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=514bp|location=Sequence derived from alignment at H-elongata_contig48045:1896..2409+ (Himanthalia elongata Himel1 dioecious)
CTTCGGATTCTGAACTCCCTTCGCAGACATGCTTTAGATCTGCTGTTGCT
ATCTCGTCCTCTCCGGTCCAAGCAGTAATGTCGTTATGGTCAGAATTTGT
TTCGTCACCAGAGTCAATTCCTATCGCAAAGAACAAGTCGTTACTTTTGC
TGTGATACTCGCTGTCGGACGCCTCTCTCACTCCCTCTGGACCTTCTCCT
GATTCACAATGTTCCGCGTCGGGAAGCTGCGTCCCATCCTGCTCATGATC
TTTGCTGCCGCGCTTACCCAAAAGGACAACAGAGAGCGCTGGTCTCTTTT
TGTCTCTATCGCTCTGCGCCTGCGCTTTGATCGCCCGCTAGTACCGGGTG
CCCCCCTACTTGGGCATCAACGAGTCCCTCAAAATCGCTCGATTCTGCGT
CGCCGAGGTACTCATGGCCATCACTGGTCTCACCGCTGTTGCTGTGCGCA
CCTTCGTCGGGTCCCGCTGCCAAGTCAACAACCTTTTGTACAGGTGCAAA
CTTGCCACGGGAGT
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Coding sequence (CDS) from alignment at H-elongata_contig48045:1896..2409+

>mRNA_H-elongata_contig48045.11943.1 ID=mRNA_H-elongata_contig48045.11943.1|Name=mRNA_H-elongata_contig48045.11943.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig48045:1896..2409+ (Himanthalia elongata Himel1 dioecious)
ATGTTCCGCGTCGGGAAGCTGCGTCCCATCCTGCTCATGATCTTTGCTGC
CGCGCTTACCCAAAAGGACAACAGAGAGCGCTGGTCTCTTTTTGTCTCTA
TCGCTCTGCGCCTGCGCTTTGATCGCCCGCTAGTACCGGGTGCCCCCCTA
CTTGGGCATCAACGAGTCCCTCAAAATCGCTCGATTCTGCGTCGCCGAGG
TACTCATGGCCATCACTGGTCTCACCGCTGTTGCTGTGCGCACCTTCGTC
GGGTCCCGCTGCCAAGTCAACAACCTTTTGTACAGGTGCAAACTTGCCAC
GGGAGTATGTTCCGCGTCGGGAAGCTGCGTCCCATCCTGCTCATGATCTT
TGCTGCCGCGCTTACCCAAAAGGACAACAGAGAGCGCTGGTCTCTTTTTG
TCTCTATCGCTCTGCGCCTGCGCTTTGATCGCCCGCTAGTACCGGGTGCC
CCCCTACTTGGGCATCAACGAGTCCCTCAAAATCGCTCGATTCTGCGTCG
CCGAGGTACTCATGGCCATCACTGGTCTCACCGCTGTTGCTGTGCGCACC
TTCGTCGGGTCCCGCTGCCAAGTCAACAACCTTTTGTACAGGTGCAAACT
TGCCACGGGAGT
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