mRNA_H-elongata_contig48041.11942.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48041.11942.1
Unique NamemRNA_H-elongata_contig48041.11942.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48041.11942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48041contigH-elongata_contig48041:469..2374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1906
Cds size987
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48041.11942.1prot_H-elongata_contig48041.11942.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48041 753..1739 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930792.285314-UTR-H-elongata_contig48041:468..7521622930792.285314-UTR-H-elongata_contig48041:468..752Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48041 469..752 +
1691679572.3604796-UTR-H-elongata_contig48041:468..7521691679572.3604796-UTR-H-elongata_contig48041:468..752Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48041 469..752 +
1622930792.322753-UTR-H-elongata_contig48041:1739..23741622930792.322753-UTR-H-elongata_contig48041:1739..2374Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48041 1740..2374 +
1691679572.3777997-UTR-H-elongata_contig48041:1739..23741691679572.3777997-UTR-H-elongata_contig48041:1739..2374Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48041 1740..2374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930792.3012931-CDS-H-elongata_contig48041:752..17391622930792.3012931-CDS-H-elongata_contig48041:752..1739Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48041 753..1739 +
1691679572.3699377-CDS-H-elongata_contig48041:752..17391691679572.3699377-CDS-H-elongata_contig48041:752..1739Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48041 753..1739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48041.11942.1

>prot_H-elongata_contig48041.11942.1 ID=prot_H-elongata_contig48041.11942.1|Name=mRNA_H-elongata_contig48041.11942.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=329bp
MLPPTWAPLGEVPLSQILLNQVLQIHVLRTQALQVRTEDRFRLYDDANLA
TRLHPRCSFSIYHAIRHAGHPFQRFARWKSRPGPILDPCRCLRGDTTVAV
AAAAAAVAAVVAAAGAVAAEAVAARRVAPQIPAASSESDPCCLGSDFPGF
GCPGSDYPGSDFRGSDCQDLDCPHPVHPEFDLHGPLRSPSPWIHGHCIPS
HVPCPRAPHGLNPCADTFLYRLRSRRRYGGDASSILLDGLRIHGGGGAQR
APCFVGATTTDPAPAARPSPPGEPPPVRYHGVVPLFPLPPRLLEAPPCLP
LSPYRYGHRPEIPRRQHATFSSRRALPG*
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mRNA from alignment at H-elongata_contig48041:469..2374+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48041.11942.1 ID=mRNA_H-elongata_contig48041.11942.1|Name=mRNA_H-elongata_contig48041.11942.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1906bp|location=Sequence derived from alignment at H-elongata_contig48041:469..2374+ (Himanthalia elongata Himel1 dioecious)
CCTCGTCATTCGACCAATCCCCTCCCCTCCGCCCCTTCTTCCCTTCATAT
CATCGAAACTCCGTTCATCCAAACGCCCCCCCGCCGCCGCCGGCTGTCTA
CCGCTGCTTCCTTCACCACCGCTGAACGATCTGCGATGCTGCCGCTGCTG
ATGGTGCTGCTGGTGTTGCTGTTGTAGCGGGGGATGAGATCGCCCCTCGA
CCGGGAAGGGAAATTGAGGACCATTCCAAGAACCGTTCCGACTATCACGT
TCCGAACCCTCAACGTGAGGACCCTCCGGCCGAGATGCTGCCCCCGACCT
GGGCCCCCCTGGGAGAAGTTCCCCTTTCCCAGATCCTGCTAAACCAGGTC
CTTCAGATCCATGTCCTCCGGACCCAGGCCCTTCAGGTCCGGACCGAGGA
TCGCTTTCGTCTGTACGACGACGCCAATCTTGCCACCCGTCTCCATCCCC
GTTGTTCATTCTCCATCTATCACGCGATCCGCCACGCGGGCCATCCCTTC
CAACGCTTCGCCCGCTGGAAGTCGCGCCCGGGCCCCATCCTCGACCCATG
TCGCTGCCTTCGGGGGGATACGACTGTTGCTGTTGCAGCGGCGGCGGCGG
CGGTTGCTGCGGTGGTTGCTGCTGCTGGGGCGGTTGCTGCGGAGGCAGTG
GCGGCCCGCCGCGTTGCTCCGCAAATCCCGGCCGCATCGAGCGAAAGCGA
TCCCTGCTGTCTCGGTTCCGACTTTCCCGGTTTCGGCTGTCCCGGTTCCG
ACTATCCCGGTTCCGACTTTCGCGGTTCCGACTGCCAGGATCTCGATTGT
CCCCATCCCGTCCATCCTGAGTTTGACCTTCACGGCCCCTTGAGGAGCCC
CAGTCCATGGATCCACGGTCACTGTATCCCTTCCCACGTTCCTTGCCCTC
GGGCCCCCCACGGTCTGAATCCCTGTGCCGATACCTTTCTATACCGTCTT
CGTAGTCGGCGCCGCTACGGCGGTGATGCCTCCTCGATTCTCCTCGATGG
ACTGAGGATCCACGGTGGTGGTGGTGCTCAGCGCGCTCCGTGTTTTGTCG
GTGCCACGACAACTGATCCTGCCCCTGCTGCTCGCCCCTCTCCCCCCGGG
GAGCCTCCTCCTGTCCGTTACCACGGGGTTGTTCCTTTGTTTCCCCTACC
CCCACGTCTCCTCGAAGCTCCGCCCTGCCTTCCTTTGTCTCCTTATCGCT
ACGGCCATCGCCCCGAGATTCCTCGGCGTCAACATGCGACTTTTTCCTCT
CGCCGAGCTCTCCCTGGTTAACTTCGCCACCGCCACCGCCACCGCCGGCG
TTTCGTTCGCTCCGTAGATCCTTCTTCCCGTCGCCACGGCGGGCCTTGTC
GAGCGTGCCCGCCCACCGCCCCGTCTTACCACTTTCCCCGCTGCCGCTGT
CGCCTTTCCTATCCACTCGATCTTTCTTTTCCCTAGCACGATCCCTGTTT
CCGTGGTCGCTTCCTTTACGGTGGTAATGGTAGTCCCGACGGGGACGCTC
CTCTTCCCTTCCCCTATCTCTATCGCGCCCACGCTCCCGACCCTTGCCGC
GGTCTTTCGACTGATTCCTGCGCCGATCTCCGTACCGTTCCCAGGAATGT
TCCCGATCGTGCCCTCGGTTTGACGAGCGGTCATGACCTCGAGAGGAATA
GCGCCGCCGGCCGCCACCTCTGTCCCTGTCTCGACTTGGAGTTCGACTTC
GGCTCTGACTCCAGCTCCAACTCCTGGATCGACTGGCGGAATATCTCCTA
TAGCGTCTGCTGCTGCTGCTGCTGCTACGACTGCGACTGCTCCAGCCGCC
GCCACGACTGCTGCTTCTGCTTCGGCTGTCTTGAGATGAACGCCCCCAGG
ACCGCTCCCTTCCACCGCCGCCTCTACCTCGACTCCTATAGTTGTCGCGG
TCTTTG
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Coding sequence (CDS) from alignment at H-elongata_contig48041:469..2374+

>mRNA_H-elongata_contig48041.11942.1 ID=mRNA_H-elongata_contig48041.11942.1|Name=mRNA_H-elongata_contig48041.11942.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1974bp|location=Sequence derived from alignment at H-elongata_contig48041:469..2374+ (Himanthalia elongata Himel1 dioecious)
ATGCTGCCCCCGACCTGGGCCCCCCTGGGAGAAGTTCCCCTTTCCCAGAT
CCTGCTAAACCAGGTCCTTCAGATCCATGTCCTCCGGACCCAGGCCCTTC
AGGTCCGGACCGAGGATCGCTTTCGTCTGTACGACGACGCCAATCTTGCC
ACCCGTCTCCATCCCCGTTGTTCATTCTCCATCTATCACGCGATCCGCCA
CGCGGGCCATCCCTTCCAACGCTTCGCCCGCTGGAAGTCGCGCCCGGGCC
CCATCCTCGACCCATGTCGCTGCCTTCGGGGGGATACGACTGTTGCTGTT
GCAGCGGCGGCGGCGGCGGTTGCTGCGGTGGTTGCTGCTGCTGGGGCGGT
TGCTGCGGAGGCAGTGGCGGCCCGCCGCGTTGCTCCGCAAATCCCGGCCG
CATCGAGCGAAAGCGATCCCTGCTGTCTCGGTTCCGACTTTCCCGGTTTC
GGCTGTCCCGGTTCCGACTATCCCGGTTCCGACTTTCGCGGTTCCGACTG
CCAGGATCTCGATTGTCCCCATCCCGTCCATCCTGAGTTTGACCTTCACG
GCCCCTTGAGGAGCCCCAGTCCATGGATCCACGGTCACTGTATCCCTTCC
CACGTTCCTTGCCCTCGGGCCCCCCACGGTCTGAATCCCTGTGCCGATAC
CTTTCTATACCGTCTTCGTAGTCGGCGCCGCTACGGCGGTGATGCCTCCT
CGATTCTCCTCGATGGACTGAGGATCCACGGTGGTGGTGGTGCTCAGCGC
GCTCCGTGTTTTGTCGGTGCCACGACAACTGATCCTGCCCCTGCTGCTCG
CCCCTCTCCCCCCGGGGAGCCTCCTCCTGTCCGTTACCACGGGGTTGTTC
CTTTGTTTCCCCTACCCCCACGTCTCCTCGAAGCTCCGCCCTGCCTTCCT
TTGTCTCCTTATCGCTACGGCCATCGCCCCGAGATTCCTCGGCGTCAACA
TGCGACTTTTTCCTCTCGCCGAGCTCTCCCTGGTTAAATGCTGCCCCCGA
CCTGGGCCCCCCTGGGAGAAGTTCCCCTTTCCCAGATCCTGCTAAACCAG
GTCCTTCAGATCCATGTCCTCCGGACCCAGGCCCTTCAGGTCCGGACCGA
GGATCGCTTTCGTCTGTACGACGACGCCAATCTTGCCACCCGTCTCCATC
CCCGTTGTTCATTCTCCATCTATCACGCGATCCGCCACGCGGGCCATCCC
TTCCAACGCTTCGCCCGCTGGAAGTCGCGCCCGGGCCCCATCCTCGACCC
ATGTCGCTGCCTTCGGGGGGATACGACTGTTGCTGTTGCAGCGGCGGCGG
CGGCGGTTGCTGCGGTGGTTGCTGCTGCTGGGGCGGTTGCTGCGGAGGCA
GTGGCGGCCCGCCGCGTTGCTCCGCAAATCCCGGCCGCATCGAGCGAAAG
CGATCCCTGCTGTCTCGGTTCCGACTTTCCCGGTTTCGGCTGTCCCGGTT
CCGACTATCCCGGTTCCGACTTTCGCGGTTCCGACTGCCAGGATCTCGAT
TGTCCCCATCCCGTCCATCCTGAGTTTGACCTTCACGGCCCCTTGAGGAG
CCCCAGTCCATGGATCCACGGTCACTGTATCCCTTCCCACGTTCCTTGCC
CTCGGGCCCCCCACGGTCTGAATCCCTGTGCCGATACCTTTCTATACCGT
CTTCGTAGTCGGCGCCGCTACGGCGGTGATGCCTCCTCGATTCTCCTCGA
TGGACTGAGGATCCACGGTGGTGGTGGTGCTCAGCGCGCTCCGTGTTTTG
TCGGTGCCACGACAACTGATCCTGCCCCTGCTGCTCGCCCCTCTCCCCCC
GGGGAGCCTCCTCCTGTCCGTTACCACGGGGTTGTTCCTTTGTTTCCCCT
ACCCCCACGTCTCCTCGAAGCTCCGCCCTGCCTTCCTTTGTCTCCTTATC
GCTACGGCCATCGCCCCGAGATTCCTCGGCGTCAACATGCGACTTTTTCC
TCTCGCCGAGCTCTCCCTGGTTAA
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